• Journal of Microbiology and Biotechnology
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• 제30권9호
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• pp.1355-1366
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• 2020

Sediment bacterial communities are critical to the biogeochemical cycle in river ecosystems, but our understanding of the relationship between sediment bacterial communities and their specific input streams in rivers remains insufficient. In this study, we analyzed the sediment bacterial community structure in a local river receiving discharge of urban domestic sewage by applying Illumina MiSeq high-throughput sequencing. The results showed that the bacterial communities of sediments samples of different pollution types had similar dominant phyla, mainly Proteobacteria, Actinobacteria, Chloroflexi and Firmicutes, but their relative abundances were different. Moreover, there were great differences at the genus level. For example, the genus Bacillus showed statistically significant differences in the hotel site. The clustering of bacterial communities at various sites and the dominant families (i.e., Nocardioidaceae, and Sphingomonadaceae) observed in the residential quarter differed from other sites. This result suggested that environmentally induced species sorting greatly influenced the sediment bacterial community composition. The bacterial co-occurrence patterns showed that the river bacteria had a nonrandom modular structure. Microbial taxonomy from the same module had strong ecological links (such as the nitrogenium cycle and degradation of organic pollutants). Additionally, PICRUSt metabolic inference analysis showed the most important function of river bacterial communities under the influence of different types of domestic sewage was metabolism (e.g., genes related to xenobiotic degradation predominated in residential quarter samples). In general, our results emphasize that the adaptive changes and interactions in the bacterial community structure of river sediment represent responses to different exogenous pollution sources.

• Journal of Ecology and Environment
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• 제42권4호
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• pp.198-204
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• 2018

Background: The effective use of habitats is essential for the successful adaptation of a species to the local environment. Although habitats exhibit a hierarchical structure, including macro-, meso-, and microhabitats, the relationships among habitats of differing hierarchy have not been well studied. In this study, we studied the quantitative measures of microhabitat use of Gekko japonicus from three field populations in Japan: one at Tsushima Island, one at Nishi Park, Fukuoka, and one at Ohori Park, Fukuoka. We investigated whether land cover type, a higher hierarchical habitat component, was associated with quantitative microhabitat use, a lower hierarchical component, in these populations. Results: The substrate temperature where we located geckos (SubT) and the distance from the ground to the gecko (Height) were significantly different among the three populations. In particular, SubT on Tsushima Island was lower than it was in the other two populations. Irradiance at gecko location and Height were significantly different among the land cover types. In particular, Height in evergreen needleleaf forest was significantly lower than that in deciduous broadleaf forest. Furthermore, significant interactions between population and land cover type were observed for the SubT and Height variables. Conclusions: The quantitative measures of microhabitat use of G. japonicus varied with population and land cover type, which exhibited significant interaction effects on microhabitat use variables. These results suggest that higher hierarchical habitat components can affect the quantitative measures of lower hierarchical microhabitat use in nocturnal geckos.

• Mycobiology
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• 제47권2호
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• pp.180-190
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• 2019

In this study, eight-month-old ectomycorrhizae of Tuber borchii with Corylus avellana were synthesized to explore the influence of T. borchii colonization on the soil properties and the microbial communities associated with C. avellana during the early symbiotic stage. The results showed that the bacterial richness and diversity in the ectomycorrhizae were significantly higher than those in the control roots, whereas the fungal diversity was not changed in response to T. borchii colonization. Tuber was the dominant taxon (82.97%) in ectomycorrhizae. Some pathogenic fungi, including Ilyonectria and Podospora, and other competitive mycorrhizal fungi, such as Hymenochaete, had significantly lower abundance in the T. borchii inoculation treatment. It was found that the ectomycorrhizae of C. avellana contained some more abundant bacterial genera (e.g., Rhizobium, Pedomicrobium, Ilumatobacter, Streptomyces, and Geobacillus) and fungal genera (e.g., Trechispora and Humicola) than the control roots. The properties of rhizosphere soils were also changed by T. borchii colonization, like available nitrogen, available phosphorus and exchangeable magnesium, which indicated a feedback effect of mycorrhizal synthesis on soil properties. Overall, this work highlighted the interactions between the symbionts and the microbes present in the host, which shed light on our understanding of the ecological functions of T. borchii and facilitate its commercial cultivation.

• 한국물환경학회지
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• 제27권1호
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• pp.73-87
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• 2011

An abnormal mono-specific bloom of the cyanobacterium Microcystis aeruginosa had developed at a specific location (transitional zone, monitoring station of Hoenam) in Daecheong Reservoir from middle of July to early August, 2001. The maximum cell counts during the peak bloom reached 1,477,500 cells/mL, which was more than 6~10 times greater than those at other monitoring sites. The hypothesis of this study is that the timing and location of the algal bloom was highly correlated with the local environmental niche that was controled by physical processes such as hydrodynamic mixing and pollutant transport in the reservoir. A three-dimensional, coupled hydrodynamic and ecological model, ELCOM-CAEDYM, was applied to the period of development and subsequent decline of the bloom. The model was calibrated against observed water temperature profiles and water quality variables for different locations, and applied to reproduce the algal bloom event and justify the limiting factor that controled the Microcystis bloom at R3. The simulation results supported the hypothesis that the phosphorus loading induced from a contaminated tributary during several runoff events are closely related to the rapid growth of Microcystis during the period of bloom. Also the physical environments of the reservoir such as a strong thermal stratification and weak wind velocity conditions provided competitive advantage to Microcystis given its light adaptation capability. The results show how the ELCOM-CAEDYM captures the complex interactions between the hydrodynamic and biogeochemical processes, and the local environmental niche that is preferable for cyanobacterial species growth.

• Journal of Ecology and Environment
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• 제45권1호
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• pp.1-9
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• 2021

Background: Abandoned coal piles after the closure of mines have a potential negative influence on the environment, such as soil acidification and heavy metal contamination. Therefore, revegetation by efficient species is required. For this, we wanted to identify the role of Silene acaulis in the succession of coal piles as a pioneer and a nurse plant. S. acaulis is a well-studied cushion plant living in the Arctic and alpine environments in the northern hemisphere. It has a highly compact cushion-like form and hosts more plant species under its canopy by ameliorating stressful microhabitats. In this research, we surveyed vegetation cover on open plots and co-occurring species within S. acaulis cushions in coal piles with different slope aspects and a control site where no coal was found. The plant cover and the similarity of communities among sites were compared. Also, the interaction effects of S. acaulis were assessed by rarefaction curves. Results: S. acaulis was a dominant species with the highest cover (6.7%) on the coal piles and occurred with other well-known pioneer species. Plant communities on the coal piles were significantly different from the control site. We found that the pioneer species S. acaulis showed facilitation, neutral, and competition effect in the north-east facing slope, the south-east facing slope, and the flat ground, respectively. This result was consistent with the stress gradient hypothesis because the facilitation only occurred on the north-east facing slope, which was the most stressed condition, although all the interactions observed were not statistically significant. Conclusions: S. acaulis was a dominant pioneer plant in the succession of coal piles. The interaction effect of S. acaulis on other species depended on the slope and its direction on the coal piles. Overall, it plays an important role in the succession of coal piles in the High Arctic, Svalbard.

• Geomechanics and Engineering
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• 제29권2호
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• pp.113-131
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• 2022

A rockburst is a common disaster in deep-tunnel excavation engineering, especially for high-geostress areas. An anomalously low friction effect is one of the most important inducements of rockbursts. To elucidate the correlation between an anomalously low friction effect and a rockburst, we establish a two-dimensional prediction model that considers the discontinuous structure of a rock mass. The degree of freedom of the rotation angle is introduced, thus the motion equations of the blocks under the influence of a transient disturbing force are acquired according to the interactions of the blocks. Based on the two-dimensional discontinuous block model of deep rock mass, a rockburst prediction model is established, and the initiation process of ultra-low friction rockburst is analyzed. In addition, the intensity of a rockburst, including the location, depth, area, and velocity of ejection fragments, can be determined quantitatively using the proposed prediction model. Then, through a specific example, the effects of geomechanical parameters such as the different principal stress ratios, the material properties, a dip of principal stress on the occurrence form and range of rockburst are analyzed. The results indicate that under dynamic disturbance, stress variation on the structural surface in a deep rock mass may directly give rise to a rockburst. The formation of rockburst is characterized by three stages: the appearance of cracks that result from the tension or compression failure of the deformation block, the transformation of strain energy of rock blocks to kinetic energy, and the ejection of some of the free blocks from the surrounding rock mass. Finally, the two-dimensional rockburst prediction model is applied to the construction drainage tunnel project of Jinping II hydropower station. Through the comparison with the field measured rockburst data and UDEC simulation results, it shows that the model in this paper is in good agreement with the actual working conditions, which verifies the accuracy of the model in this paper.

• Journal of Ecology and Environment
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• 제46권1호
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• pp.62-75
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• 2022

Background: Pollinators help plants to reproduce and support economically valuable food for humans and entire ecosystems. However, declines of pollinators along with population growth and increasing agricultural activities hamper this mutual interaction. Nectar and pollen are the major reward for pollinators and flower morphology and volatiles mediate the specialized plant-pollinator interactions. Limited information is available on the volatile profiles attractive to honey bees and bumblebees. In this study we analyzed the volatile organic compounds of the flowers of 9 different plant species that are predominantly visited by honey bees and bumblebees. The chemical compositions of the volatiles were determined using a head space gas chromatography-mass spectrometry (GC-MS) method, designed to understand the plant-pollinator chemical interaction. Results: Results showed the monoterpene 1,3,6-octatriene, 3,7-dimethyl-, (E) (E-𝞫-ocimene) was the dominating compound in most flowers analyzed, e.g., in proportion of 60.3% in Lonicera japonica, 48.8% in Diospyros lotus, 38.4% Amorpha fruticosa and 23.7% in Robinia pseudoacacia. Ailanthus altissima exhibited other monoterpenes such as 3,7-dimethyl-1,6-octadien-3-ol (𝞫-linalool) (39.1%) and (5E)-3,5-dimethylocta-1,5,7-trien-3-ol (hotrienol) (32.1%) as predominant compounds. Nitrogen containing volatile organic compounds (VOCs) were occurring principally in Corydalis speciosa; 1H-pyrrole, 2,3-dimethyl- (50.0%) and pyrimidine, 2-methyl- (40.2%), and in Diospyros kaki; 1-triazene, 3,3-dimethyl-1-phenyl (40.5%). Ligustrum obtusifolium flower scent contains isopropoxycarbamic acid, ethyl ester (21.1%) and n-octane (13.4%) as major compounds. In Castanea crenata the preeminent compound is 1-phenylethanone (acetophenone) (46.7%). Conclusions: Olfactory cues are important for pollinators to locate their floral resources. Based on our results we conclude monoterpenes might be used as major chemical mediators attractive to both honey bees and bumblebees to their host flowers. However, the mode of action of these chemicals and possible synergistic effects for olfaction need further investigation.

• The Plant Pathology Journal
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• 제38권1호
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• pp.1-11
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• 2022

Fusarium culmorum is one of the most important causal agents of root rot of wheat. In this study, 10 F. culmorum isolates were collected from farms located in five agro-ecological regions of Morocco. These were used to challenge 20 durum wheat genotypes via artificial inoculation of plant roots under controlled conditions. The isolate virulence was determined by three traits (roots browning index, stem browning index, and severity of root rot). An alpha-lattice design with three replicates was used, and the resulting ANOVA revealed a significant (P < 0.01) effect of isolate (I), genotype (G), and G × I interaction. A total of four response types were observed (R, MR, MS, and S) revealing that different genes in both the pathogen and the host were activated in 53% of interactions. Most genotypes were susceptible to eight or more isolates, while the Moroccan cultivar Marouan was reported resistant to three isolates and moderately resistant to three others. Similarly, the Australian breeding line SSD1479-117 was reported resistant to two isolates and moderately resistant to four others. The ICARDA elites Icaverve, Berghisyr, Berghisyr2, Amina, and Icaverve2 were identified as moderately resistant. Principal component analysis based on the genotypes responses defined two major clusters and two sub-clusters for the 10 F. culmorum isolates. Isolate Fc9 collected in Khemis Zemamra was the most virulent while isolate Fc3 collected in Haj-Kaddour was the least virulent. This work provides initial results for the discovery of differential reactions between the durum lines and isolates and the identification of novel sources of resistance.

• 생태와환경
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• 제55권4호
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• pp.259-273
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• 2022

먹이망은 군집의 종구성과 종간 관계를 나타내줄 뿐만 아니라 먹이망을 구성하는 요소를 정량화하여 구조를 분석하고 이해하는 데 유용하다. 먹이망에 관한 연구는 군집의 영양 패턴, 피식자와 포식자 사이의 개체군 동태, 생태계 안정성, 생태계 내 물질/에너지 흐름 등의 이해에 도움을 준다. 먹이망 모델은 생태계 군집의 종간 관계 복잡성을 이상적으로 표현해 주며 자연 생태계에서 관찰된 유형에 대한 정보를 제공해주므로, 먹이망 모델은 대상 군집의 특성과 동태를 연구하는 도구로 사용될 수 있다. 본 연구에서는 국내외에서 사용되는 주요 먹이망 모델을 정적 모델과 동적 모델의 유형으로 구분하여 주요 모델의 특성과 적용 사례를 고찰하였다. 정적 모델로 Ecopath 모델이 많이 사용되고 있고 이는 동적 모델인 Ecosim과 연계되어 Ecopath with Ecosim으로 통합되어 사용되고 있다. 또한 동적 모델로 독성물질 특성 등의 영향을 분석하고자 하는 경우 AQUATOX 모델이 많이 사용되고 있다. 효율적인 먹이망 모델을 구축하기 위해서는 대상 생태계의 생물 요소들 사이의 섭식선호성 관계가 충분히 파악되어야 하고 또한 주요 환경인자들이 이들 생물에 미치는 영향에 대한 기초자료 수집이 필요하다. 효율적인 생태계 관리를 위해서는 환경변수만을 고려하는 관리가 아닌 환경과 생물 특성과 관계, 그리고 먹이망을 같이 고려하는 생태계 수준의 연구가 요구된다.

• Journal of Ecology and Environment
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• 제47권1호
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• pp.1-13
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• 2023

Background: The positive effects of Arctic plants on the soil environment and plant-species co-occurrence patterns are known to be particularly important in physically harsh environments. Although three dominant plants (Cassiope tetragona, Dryas octopetala, and Silene acaulis) are abundant in the Arctic ecosystem at Ny-Ålesund, Svalbard, few studies have examined their occurrence patterns with other species and their buffering effect on soil-temperature and soil-moisture fluctuation. To quantify the plant-species co-occurrence patterns and their positive effects on soil environments, I surveyed the vegetation cover, analyzed the soil-chemical properties (total carbon, total nitrogen, pH, and soil organic matter) from 101 open plots, and measured the daily soil-temperature and soil-moisture content under three dominant plant patches and bare soil. Results: The Cassiope tetragona and Dryas octopetala communities increased the soil-temperature stability; however, the three dominant plant communities did not significantly affect the soil-moisture stability. Non-metric multidimensional scaling separated the sampling sites into three groups based on the different vegetation compositions. The three dominant plants occurred randomly with other species; however, the vegetation composition of two positive co-occurring species pairs (Oxyria digyna-Cerastium acrticum and Luzula confusa-Salix polaris) was examined. The plant species richness did not significantly differ in the three plant communities. Conclusions: The three plant communities showed distinctive vegetation compositions; however, the three dominant plants were randomly and widely distributed throughout the study sites. Although the facilitative effects of the three Arctic plants on increases in the soil-moisture fluctuation and richness were not quantified, this research enables a deeper understanding of plant co-occurrence patterns in Arctic ecosystems and thereby contributes to predicting the shift in vegetation composition and coexistence in response to climate warming. This research highlights the need to better understand plant-plant interactions within tundra communities.