• Title/Summary/Keyword: EBI

Search Result 47, Processing Time 0.02 seconds

Selection of next-generation antigen protein for diagnosis of pfhrp2/pfhrp3 gene deleted plasmodium falciparum based on bioinformatics (pfhrp2/pfhrp3 유전자 결여 열대열 말라리아 특이 진단을 위한 생물정보학 기반 차세대 항원 단백질 선정)

  • Seo, Seung Hwan;Lee, Jihoo;Choi, Jae-Won;Kim, Hak Yong
    • Proceedings of the Korea Contents Association Conference
    • /
    • 2016.05a
    • /
    • pp.187-188
    • /
    • 2016
  • 열대열 말라리아(Plasmodium falciparum, P. falciparum, P. f) 신속진단키트의 경우, P. falciparum에 특이적인 단백질로써 Histidine Rich Protein 2 (PfHRP2)가 사용되고 있다. 그러나 최근 연구에서 남아메리카와 중앙아메리카를 중심으로 pfhrp2/pfhrp3 유전자가 결여된 P. falciparum 열원충이 나타나는 것으로 보고된 바 있다. 본 연구에서는 생물정보학을 기반으로 PfHRP2 항원 단백질을 대체할 수 있는 새로운 P. falciparum 특이 항원 단백질을 선정하고자, PlasmoDB에서 5,777개의 P. falciparum 관련 단백질 리스트를 얻었다. 이후 NCBI BLAST를 통해 단백질 아미노산 서열을 분석하고 정상인에게 존재하지 않으며, 동시에 다른 말라리아 열원충(P. vivax, P. ovale, P. malariae, P. knowlesi)에도 존재하지 않는 P. falciparum 특이 아미노산 서열을 가진 단백질 15개를 추출하였다. IEDB analysis를 이용하여 에피토프, 수용성, 베타-턴, 접근성, 유연성, 면역원성을 분석하여 높은 평균값을 갖는 상위 3개 단백질을 선별하였다. KEGG pathway와 EMBL-EBI를 통해 선별된 3개 단백질의 혈액내 검출 가능성 및 아미노산 서열의 보존성을 분석하여 최종적으로 Glutamate-Rich Protein (GLURP)을 선정하였다. AIDA를 통해 단백질 아미노산 서열을 이용한 3차 구조 예측으로 GLURP의 구조 및 항체와의 결합을 도식화하였다. 최종적으로 선정한 GLURP는 pfhrp2/pfhrp3 유전자 결여 P. falciparum까지 특이적으로 진단이 가능하여 차세대 P. falciparum 특이 신속진단키트 개발에 도움이 될 수 있을 것으로 기대한다.

  • PDF

Effects of a new generation of fish protein hydrolysate on performance, intestinal microbiology, and immunity of broiler chickens

  • Amir Hossein Alizadeh-Ghamsari;Amir Reza Shaviklo;Seyyed Abdullah Hosseini
    • Journal of Animal Science and Technology
    • /
    • v.65 no.4
    • /
    • pp.804-817
    • /
    • 2023
  • This study was conducted to evaluate the effects of co-dried fish protein hydrolysate (CFPH) on broilers performance, intestinal microbiology, and cellular immune responses. Five hundred one-day-old (Ross 308) male broilers were allocated to four treatments with five replicates of 25 birds in a completely randomized design. The experimental treatments included four levels of CFPH (0% as the control, 2.5%, 5%, and 7.5%) in the isonitrogenous and isocaloric diets. During the experiment, body weight (BW) and feed intake (FI) were periodically recorded in addition to calculating average daily gain (ADG), feed conversion ratio (FCR), liveability index, and European broiler index (EBI). In addition, cellular immune responses were evaluated at 30 days of age. On day 42, ileal contents were obtained to examine the microbial population. Based on the findings, Dietary supplementation of 5 and 7.5% CFPH increased the percentage of the thigh while decreasing the relative weight of the gizzard compared to the control group. The highest relative length of jejunum was observed in birds receiving 2.5 and 5% CFPH, and its highest relative weight belonged to birds fed with 5% CFPH. The number of coliforms, enterobacters, and total gram-negative bacteria in the intestines of birds receiving CFPH was less than that of the control group. In general, the application of CFPH in broiler nutrition can decrease the level of soybean meal in diet and it can be considered as a new protein supplement in poultry production. It is suggested to study the incorporation of this new supplement in other livestock's diets.

Human IL-27p28 Gene Polymorphisms are Associated with the Serum Total IgE Levels of Allergic Rhinitis Patients (사람의 IL-27p28 유전자 다형성은 알레르기성 비염 환자 혈청의 IgE 양과 연관됨)

  • Yu, Ji-In;Han, Weon-Cheol;Lee, Jae-Hoon;Kim, Hun-Soo;Yun, Ki-Jung;Lee, Jae-Hoon;Moon, Hyung-Bae;Chae, Soo-Cheon
    • Journal of Life Science
    • /
    • v.19 no.3
    • /
    • pp.299-304
    • /
    • 2009
  • Interleukin 27 (IL-27) was discovered as a heterodimeric cytokine of the IL-12 family, and is composed of two subunits - Epstein-Barr virus induced gene 3 (EBI3) and p28. It acts as a versatile cytokine in the early regulation of Th1 initiation and in the negative regulation of the Th2 factor GATA binding protein 3 (GATA-3). This cytokine is mediated by the IL-27 receptor (WSX-1), which is highly expressed on $CD4^+$ T lymphocytes and NK cells. We previously identified four polymorphisms in the human IL-27p28 gene and suggested that the polymorphism of IL-27p28 is associated with susceptibility to asthma. To determine whether these IL-27p28 SNPs are associated with susceptibility to allergic rhinitis, the genotype and allele frequencies of IL-27p28 SNPs were analyzed between allergic rhinitis patients and healthy controls. Although the genotype and allele frequencies of IL-27p28 SNPs in allergic rhinitis patients were not significantly different from those of the control group, there was a suggestive difference (P=0.037) between these groups in total serum IgE levels in the g.2905T>G SNP of the IL-27p28 gene. Our result implies that the g.2905T>G SNP of the IL-27p28 gene might have an affect on IgE production in allergic rhinitis patients.

Gramene database: A resource for comparative plant genomics, pathways and phylogenomics analyses

  • Tello-Ruiz, Marcela K.;Stein, Joshua;Wei, Sharon;Preece, Justin;Naithani, Sushma;Olson, Andrew;Jiao, Yinping;Gupta, Parul;Kumari, Sunita;Chougule, Kapeel;Elser, Justin;Wang, Bo;Thomason, James;Zhang, Lifang;D'Eustachio, Peter;Petryszak, Robert;Kersey, Paul;Lee, PanYoung Koung;Jaiswal, kaj;Ware, Doreen
    • Proceedings of the Korean Society of Crop Science Conference
    • /
    • 2017.06a
    • /
    • pp.135-135
    • /
    • 2017
  • The Gramene database (http://www.gramene.org) is a powerful online resource for agricultural researchers, plant breeders and educators that provides easy access to reference data, visualizations and analytical tools for conducting cross-species comparisons. Learn the benefits of using Gramene to enrich your lectures, accelerate your research goals, and respond to your organismal community needs. Gramene's genomes portal hosts browsers for 44 complete reference genomes, including crops and model organisms, each displaying functional annotations, gene-trees with orthologous and paralogous gene classification, and whole-genome alignments. SNP and structural diversity data, available for 11 species, are displayed in the context of gene annotation, protein domains and functional consequences on transcript structure (e.g., missense variant). Browsers from multiple species can be viewed simultaneously with links to community-driven organismal databases. Thus, while hosting the underlying data for comparative studies, the portal also provides unified access to diverse plant community resources, and the ability for communities to upload and display private data sets in multiple standard formats. Our BioMart data mining interface enable complex queries and bulk download of sequence, annotation, homology and variation data. Gramene's pathway portal, the Plant Reactome, hosts over 240 pathways curated in rice and inferred in 66 additional plant species by orthology projection. Users may compare pathways across species, query and visualize curated expression data from EMBL-EBI's Expression Atlas in the context of pathways, analyze genome-scale expression data, and conduct pathway enrichment analysis. Our integrated search database and modern user interface leverage these diverse annotations to facilitate finding genes through selecting auto-suggested filters with interactive views of the results.

  • PDF

Pretreatment of Kenaf Core by Combined Electron Beam Irradiation and Water Steam for Enhanced Hydrolysis (향상된 가수분해율을 얻기 위한 전자선 조사와 물찜의 복합 전처리공정을 이용한 케냐프 코어 전처리)

  • Lee, Jin-Young;Lee, Byoung-Min;Jeun, Joon-Pyo;Kang, Phil-Hyun
    • Korean Chemical Engineering Research
    • /
    • v.52 no.1
    • /
    • pp.113-118
    • /
    • 2014
  • We have investigated the combined pretreatment of electron beam irradiation (EBI) and water steam as a kenaf core pretreatment process. After each sample was exposed to electron beam dose ranging from 50 to 1,000 kGy, the irradiated sample was treated by water steam using an autoclave for 5-h at $120^{\circ}C$. The pretreated samples were characterized using FTIR-ATR and XRD. FTIR spectra and XRD analysis of nonpretreated and pretreated samples confirm that crystallinity changes were observed before and after the pretreatment. The crystallinity index (CrI) was increased from 50.6% for nonpretreated sample 55.0% for 500 kGy exposed sample. And then, we analyzed sugar yield that is the amount of produced mono-saccharides in pretreated sample by enzymatic hydrolysis; an enzyme activity rate was 70 FPU/mL and 40 CBU/mL, and the loading time was 24, 48 and 72-h. The highest sugar yield was 83.9% at 500 kGy after 72-h for enzymatic hydrolysis. The sugar yield of enzymatic hydrolysis for pretreatment samples was increased as doses are subsequently changed to 100, 200 and 300 kGy, allowing to give 50.8%, 58.6% and 67.9%, respectively.

Enhancing Electrical Properties of Sol-Gel Processed IGZO Thin-Film Transistors through Nitrogen Atmosphere Electron Beam Irradiation (질소분위기 전자빔 조사에 의한 졸-겔 IGZO 박막 트랜지스터의 전기적 특성 향상)

  • Jeeho Park;Young-Seok Song;Sukang Bae;Tae-Wook Kim
    • Journal of the Microelectronics and Packaging Society
    • /
    • v.30 no.3
    • /
    • pp.56-63
    • /
    • 2023
  • In this paper, we studied the effect of electron beam irradiation on sol-gel indium-gallium-zinc oxide (IGZO) thin films under air and nitrogen atmosphere and carried out the electrical characterization of the s ol-gel IGZO thin film transistors (TFTs). To investigate the optical properties, crystalline structure and chemical state of the sol-gel IGZO thin films after electron beam irradiation, UV-Visible spectroscopy, X-ray diffraction (XRD), and X-ray photoelectron spectroscopy (XPS) were carried out. The sol-gel IGZO thin films exhibited over 80% transmittance in the visible range. The XRD analysis confirmed the amorphous nature of the sol-gel IGZO films regardless of electron beam irradiation. When electron beam irradiation was conducted in a nitrogen (N2) atmosphere, we observed an increased proportion of peaks related to M-O bonding contributed to the improved quality of the thin films. Sol-gel IGZO TFTs subjected to electron beam exposure in a nitrogen atmosphere exhibited enhanced electrical characteristics in terms of on/off ratio and electron mobility. In addition, the electrical parameters of the transistor (on/off ratio, threshold voltage, electron mobility, subthreshold swing) remained relatively stable over time, indicating that the electron beam exposure process in a nitrogen atmosphere could enhance the reliability of IGZO-based thin-film transistors in the fabrication of sol-gel processed TFTs.

Effects of Health Belief on Exercise Adherence among college Students in China -Mediating Effect of Planning behavior and action control- (중국 대학생의 건강 신념이 운동지속성에 미치는 영향 -계획 행동과 행동 제어의 매개효과-)

  • Li Qiuying;Cho, Mi Young
    • The Journal of the Convergence on Culture Technology
    • /
    • v.10 no.3
    • /
    • pp.769-782
    • /
    • 2024
  • The purpose of this study analyzes by confirming the structural relationship between the four variables of Chinese college students' health beliefs, planned behavior, behavioral control, and exercise persistence, this study can establish measures to enhance and improve college students' health beliefs and planned behavior and improve behavioral control. The purpose is to provide basic data to improve the level of continued exercise among college students. The EBI study verified reliability and validity through a preliminary survey targeting 380 people. This survey distributed questionnaires to college students at 52 universities from May 12 to July 21, 2023, and a total of 5,109 copies were finally selected and analyzed, excluding invalid questionnaires. As a result of the study, first, the structural relationship between variables showed that health beliefs had a positive effect on planning behavior, behavioral control, and exercise persistence. Second, planning behavior was found to have a positive effect on behavioral control and motor persistence. Third, behavioral control was found to have a positive effect on exercise persistence. Fourth, planning behavior and behavioral control were found to play a positive mediating role in the relationship between health beliefs and exercise persistence. Therefore, to improve college students' health beliefs, schools should open a health psychology curriculum. Furthermore, there is a need to strengthen college students' beliefs about their health by developing and distributing customized health education programs for college students.