• Title/Summary/Keyword: Dominant Factor

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N-Acetyltransferase 2 Gene Polymorphisms are Associated with Susceptibility to Cancer: a Meta-analysis

  • Tian, Fang-Shuo;Shen, Li;Ren, Yang-Wu;Zhang, Yue;Yin, Zhi-Hua;Zhou, Bao-Sen
    • Asian Pacific Journal of Cancer Prevention
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    • v.15 no.14
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    • pp.5621-5626
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    • 2014
  • N-acetyltransferase 2 (NAT2) is a polymorphic enzyme that plays an important role in the metabolism of various potential carcinogens. In recent years, a number of studies have been carried out to investigate the relationship between the rs1799930 and rs1799931 polymorphism in NAT2 and cancer risk in multiple populations for different types of cancer. However, the results were not consistent. Therefore, we performed a meta-analysis to further explore the relationship between NAT2 polymorphism and the risk of cancer. A total of 21 studies involving 15, 450 subjects for rs1799930 and 13, 011 subjects for rs1799931 were included in this meta-analysis. Crude odds ratios (ORs) with 95% confidence intervals (CIs) were used to assess strength of associations. We also evaluated the publication bias and performed a sensitivity analysis. Overall, our results showed an apparent significant association between the NAT2 rs1799930 polymorphism and cancer susceptibility in Asians (GA vs. GG: OR=1.22, 95% CI=1.03-1.45; dominant model: OR=1.22, 95% CI=1.03-1.43) and population-based controls (GA vs. GG: OR=1.10, 95% CI=1.01-1.19; dominant model: OR=1.09, 95% CI=1.01-1.18). In contrast, a significant association was observed between the NAT2 rs1799931 G>A polymorphism and decreased cancer susceptibility in overall meta-analysis (AA vs. GG: OR=0.55, 95% CI=0.33-0.93; GA vs. GG: OR=1.00, 95% CI=0.88-1.14; dominant model: OR=0.97, 95% CI=0.86-1.10; recessive model: OR=0.56, 95% CI=0.34-0.94) and the Asian group (AA vs. GG: OR=0.50, 95% CI=0.26-0.94; recessive model, OR=0.50, 95% CI=0.27-0.94). We found that the NAT2 rs1799930 may be a risk factor, while the NAT2 rs1799931 polymorphism is associated with a decreased risk of cancer and is likely a protective factor against cancer development.

EXPRESSION OF DOMINANT NEGATIVE p63 ISOFORM IN WELL-DIFFERENCIATED ORAL SQUAMOUS CELL CARCINOMA (분화도 좋은 구강 편평상피세포암종에서 Dominant Negative p63 isoform의 발현)

  • Kim, In-Su;Kim, Chul-Hwan;Kim, Kyung-Wook
    • Journal of the Korean Association of Oral and Maxillofacial Surgeons
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    • v.33 no.3
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    • pp.191-198
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    • 2007
  • The p53 which is well known as tumor suppressor gene is located at 17p13. p53 is a sequence-specific DNA binding transcription factor that responds to certain cytotoxic stresses, such as DNA damage, by enhancing the transcription of genes that regulate cell-cycle progression as well as programmed cell death. The p63 gene that is located at 3q27-29, is recognized members of the p53 family, and responsible for the transcription of 6 isoforms. Three isoforms ($TAp63{\alpha}$, $TAp63{\beta}$, $TAp63{\gamma}$) contain an N-terminal transactivation (TA) domain and can induce apoptosis. The other 3 isoforms (${\Delta}Np63{\alpha}$, ${\Delta}Np63{\beta}$, ${\Delta}Np63{\gamma}$) lack the TA domain and may function in a dominant-negative fashion by inhibiting the transactivation functions of p53 and TAp63 proteins, and thus act as oncoproteins. A number of studies have investigated the role of p63 in human squamous cell carcinomas from different organs. Only a few studies have examined ${\Delta}Np63$ isoform in oral squamous cell carcinoma including normal epithelium. This study aimed to evaluate expression of ${\Delta}Np63$ isoform in human oral squamous cell carcinoma tissue and normal mucosa. The 3 cases of well differenciated oral squamous cell carcinoma specimen including adjacent normal mucosa were examined, and immunohistochemical study with monoclonal antibody(4A4) and tumor cell apoptosis analysis with Transmission Electon Microscopy were studied. And, RT-PCR analysis was done for expression of ${\Delta}Np63$ isoform. The results were as followed. 1. Normal gingiva showed the restricted p63 expression in basal cell layer. 2. Well differentiated squamous cell carcinoma showed mainly p63 expression in overall area of malignancy, especially in basal cell layer to adjacent stromal tissue. 3. Tumor cells around keratinized area with no p63 expression disclosed less micro-organelle in decreased size cytoplasm and severe chromatin margination with nuclear destruction that means apoptosis. 4. Comparison of mRNA expression of ${\Delta}Np63$ isoform by RT-PCR showed variable expression of ${\Delta}Np63$ isoform, but ${\Delta}Np63{\alpha}$ was most highly expressed in all 3 tumor specimen. From theses results, it should be suggested that ${\Delta}Np63$ isoform expression in well differentiated squamous cell carcinoma was closely related to tumor oncogenesis, expecially overexpression of ${\Delta}Np63{\alpha}$ is a most important factor in tumor genesis of oral squamous cell carcinoma.

Changes in Community Structure of Chironomidae Caused by Variability of Environmental Factors among Weir Sections in Korean Rivers (국내 보구간의 환경요인 차이에 의한 깔따구의 군집 구성 변화)

  • Kim, Won-Seok;Park, Jae-Won;Hong, Cheol;Choi, Bohyung;Kim, Ho-Joon;Park, YeonJeong;Park, Jung-Ho;Song, Haeng-Seop;Kwak, Ihn-Sil
    • Korean Journal of Ecology and Environment
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    • v.53 no.1
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    • pp.46-54
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    • 2020
  • Artificial and natural changes such as weir construction and climate change often cause abnormal blooming of organism. Therefore, variations in species community of organisms have been actively investigated to identify influential environmental changes on the fresh water ecosystem. In this study, we investigated Chironomidae community and environmental factors at 5 representative weirs (Ipo, IP; Sejong, SJ; Juksan, JS; Gangjeong-goryung, GG; and Dalsung weir) in 4 Korean major rivers to figure out relationship between Chironomidae community and environmental factors. Environmental factors indicating organic matter (total organic carbon, TOC and Chlorophyll-a, Chl-a) showed lower concentration in IP and SJ compared with other sites(JS, GG and DS). 3 sub-family 18 genus 25 species of Chironomidae community were found in this study. Among them, Chironominae was dominant in JS (Tanytarsus sp.1), GG (Polypedilum scalaenum) and DS (Polypedilum scalaenum), while different sub-family were dominant in IP (Orthcladinae, Tokunagayusurika akamushi) and SJ (Tanypodinae, Tanypus punctipennis). Moreover, based on the dominant species of Chironomidae community and environmental factors, the cluster analysis classified our study sites into 3 groups. These results imply that the diet resource is the most important factor for dominance of Chironomidae in Korean rivers. We also suggest that further study on the identification of diet resources for each Chironomidae specie is required for better understating of distribution in species community of Chironomidae at various ecosystems.

Species Composition of Fishes Collected by Fyke Net and Length-Weigth Relationships of Skygager (Erythroculter erythropterus) in Asan Lake and Chungju Lake (아산호와 충주호의 삼각망에서 채집된 어류 종 조성 및 강준치 (Erythroculter erythropterus) 개체군의 전장-체중 관계 분석)

  • Heo, Min Ah;An, Heui Chen;Park, Min Su;Yang, Yeong Jun;Lee, Wan-Ok
    • Korean Journal of Ichthyology
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    • v.33 no.4
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    • pp.287-296
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    • 2021
  • This study was conducted to investigate the species composition collected by fyke net and characteristics of the Erythroculter erythropterus population in the Asan Lake and Chungju Lake from June to September, 2021. The collected fish in Asan lake were identified as 4,977 individuals of 13 species from a total of six families and in Chungju lake were identified as 2,436 individuals of 18 species from a total of eight families. The dominant species in Asan lake, both the individuals and biomass were E. erythropterus with 4,470 (89.8%) and 498,424g (84.5%). The dominant species in Chungju lake, both the individuals and biomass were E. erythropterus with 1,327 (54.5%) and 301,818 g (77.5%). The results of the community analysis showed that a dominant index value of Asan lake was 0.93, higher than 0.71 of Chungju lake, and a diversity, evenness, and richness index value of Chungju lake were higher than of Asan lake. The frequency distribution of the total length analysis of the E. erythropterus population showed the appearance rate of 1~2 year olds was high in Asan lake, and the appearance rate of more than 2 years old were high in Chungju lake. The length-weight analysis of E. erythropterus in Asan Lake and Chungju Lake showed a regression coefficient b of 3.06 and 3.04, a condition factor (K) of 0.000128 and 0.000051 with a positive slope. This study could be served as baseline data for assessing habitat characteristics based on the species composition of fishes, and identifying health conditions of E. erythropterus in Asan Lake and Chungju Lake, artificial lakes.

Analysis on Wood Quality, Geometry Factor, and Their Effects on Lathe Check of Samama (Anthocephalus macrophyllus) Veneer

  • Cahyono, Tekat Dwi;Wahyudi, Imam;Priadi, Trisna;Febrianto, Fauzi;Bahtiar, Effendi Tri;Novriyanti, Eka
    • Journal of the Korean Wood Science and Technology
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    • v.44 no.6
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    • pp.828-841
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    • 2016
  • Relatively little information is available regarding the correlation between wood and veneer quality, especially for Samama wood, an endemic wood species in eastern Indonesia. This study addresses the quality of 8 years old Samama wood and its effect on the veneer quality. Samama wood quality was determined by evaluating its specific gravity, moisture content, fiber dimensions, and microfibril angle from pith toward bark. Meanwhile, veneer quality was assessed by examining veneer thickness and lathe check characteristics. Geometry factor model was constructed to elaborate the quantities of lathe check from pith toward bark. Results show that fair variations of veneer thickness, ranging from 1.5 mm to 3.0 mm, could be obtained from Samama wood. The quantity, depth, and length of lathe check were noticeably decreasing toward bark. Further, in the same manufacturing process, geometry factor was determined as the dominant factor over other wood properties in affecting the frequency of lathe checks from pith towards bark. These facts should be put into consideration in producing veneer from Samama wood. Moreover, these results enlighten the potential of Samama wood as plywood and other excellent veneer-based products.

Wheel Load Distribution Factor for Girder Moment and Shear Force of Skew Plate Girder Bridges (판형사교 거더의 휨모멘트와 전단력에 대한 하중분배계수)

  • Seo, Chang-Bum;Song, Jae-Ho
    • Journal of the Korean Society of Hazard Mitigation
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    • v.5 no.1 s.16
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    • pp.33-43
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    • 2005
  • The girder wheel load distribution factors stated in the Korean Bridge Specification and AASHTO Standard Specifications do not account for the effect of skewness of plate girders, and very little research has been conducted on girder wheel load distribution factors. The purpose of the study is to propose load distribution factor formulas for skew plate girder bridges which comprise various parameters through structural analysis. To confirm the validity of finite element models used in this study analytic values are compared with the field test results. From the results it should be noted that span length is not such a dominant parameter compared with others. In view of better load distribution of interior girders, skew arranged cross beams or bracing are preferable, furthemore bracing system is more effective than cross beam system. By means of regression analysis on the basis of analytic results wheel load distribution factor formulas are proposed and compared with current codes.

Hypoxia Inducible Factor-1α Directly Induces the Expression of Receptor Activator of Nuclear Factor-κB Ligand in Chondrocytes

  • Baek, Kyunghwa;Park, Hyun-Jung;Baek, Jeong-Hwa
    • International Journal of Oral Biology
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    • v.41 no.1
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    • pp.9-15
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    • 2016
  • Receptor activator of nuclear factor-${\kappa}B$ ligand (RANKL) is an osteoblast/stromal cell-derived essential factor for osteoclastogenesis. During endochondral bone formation, hypertrophic chondrocytes calcify cartilage matrix that is subsequently resorbed by osteoclasts in order to be replaced by new bone. Hypoxia-induced upregulation of RANKL expression has been previously demonstrated in an in vitro system using osteoblasts; however, the involved mechanism remains unclear in chondrocytes. In the present study, we investigated whether hypoxia regulates RANKL expression in ATDC5 cells, a murine chondrogenic cell line, and hypoxia-inducible factor-$1{\alpha}$ (HIF-$1{\alpha}$) mediates hypoxia-induced RANKL expression by transactivating the RANKL promoter. The expression levels of RANKL mRNA and protein, as well as HIF-$1{\alpha}$ protein, were significantly increased in ATDC5 cells under hypoxic condition. Constitutively active HIF-$1{\alpha}$ alone significantly increased the levels of RANKL expression under normoxic conditions, whereas dominant negative HIF-$1{\alpha}$ reduced hypoxia-induced RANKL expression. HIF-$1{\alpha}$ increased RANKL promoter reporter activity in a HIF-$1{\alpha}$ binding element-dependent manner in ATDC5 cells. Hypoxia-induced RANKL levels were much higher in differentiated ATDC5 cells, as compared to proliferating ATDC5 cells. These results suggested that under hypoxic conditions, HIF-$1{\alpha}$ mediates induction of RANKL expression in chondrocytes; in addition, hypoxia plays a role in osteoclastogenesis during endochondral bone formation, at least in part, through the induction of RANKL expression in hypertrophic chondrocytes.

The distribution characteristics of trace elements of fine ambient particulate in Korea

  • Lim, Jong-Myoung;Lee, Jin-Hong;Kim, Ki-Hyun
    • Analytical Science and Technology
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    • v.18 no.3
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    • pp.241-249
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    • 2005
  • In this study, instrumental neutron activation analysis was used to measure the concentrations of about 30 trace elements in airborne particulate (PM2.5) samples at urban area of Daejeon city located in the southwestern region of Korea. An inspection of the measurement data indicates that the distribution patterns of trace elements could clearly distinguish the elements with their concentrations ranging over five orders of magnitude. The mean values for Lu and Dy were found to be the lowest at values of 0.01 and $0.04ng/m^3$, while those for K and Fe showed the highest value of 671 and $653ng/m^3$, respectively. The results of correlation analysis showed that PM2.5 concentrations can exhibit much more enhanced correlations with the elements of earth crustal components. The results of factor analysis further indicated that there are no more than six factors with statistical significance, which may exert dominant roles in regulating the elemental concentration levels in the study area. Enrichment factor analysis supports explicit interpretation of results found by this factor analysis.

Girder Wheel Load Distribution Factor of Skew Plate Girder Bridges (강판형 사교의 거더분배계수에 관한 연구)

  • Seo, Chang-Bum;Song, Jae-Ho
    • Journal of the Korea institute for structural maintenance and inspection
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    • v.9 no.1
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    • pp.293-303
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    • 2005
  • The girder wheel load distribution factors stated in the Korean Bridge Specification and AASHTO Standard Specifications do not account for the effect of skewness of plate girders, and very little research has been conducted on girder wheel load distribution factors. The purpose of the study is to propose load distribution factor formulas for skew plate girder bridges which comprise various parameters through structural analysis. To comprise the validity of finite element models used in this study analytic values are compared with the field test results. From the results it should be noted that span length is not such a dominant parameter compared with others. In view of better load distribution of interior girders, skew arranged cross beams or bracing are preferable, furthemore bracing system is more effective than cross beam system. By means of regression analysis on the basis of analytic results wheel load distribution factor formulas are proposed and compared with current codes.