• 제목/요약/키워드: Diversity Model

검색결과 848건 처리시간 0.026초

Analysis of Genetic Diversity and Population Structure of Wild Strains and Cultivars Using Genomic SSR Markers in Lentinula edodes

  • Lee, Hwa-Yong;Moon, Suyun;Ro, Hyeon-Su;Chung, Jong-Wook;Ryu, Hojin
    • Mycobiology
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    • 제48권2호
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    • pp.115-121
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    • 2020
  • In this study, the genetic diversity and the population structure of 77 wild strains and 23 cultivars of Lentinula edodes from Korea were analyzed using 20 genomic SSRs, and their genetic relationship was investigated. The tested strains of L. edodes were divided into three sub-groups consisting of only wild strains, mainly wild strains and several cultivars, and mainly cultivars and several wild strains by distance-based analysis. Using model-based analysis, L. edodes strains were divided into two subpopulations; the first one consisting of only wild strains and the second one with mainly cultivars and several wild strains. Moreover, AMOVA analysis revealed that the genetic variation in the cultivars was higher than that in the wild strains. The expected and observed heterozygosity and values indicating the polymorphic information content of L. edodes cultivars from Korea were also higher than that of the wild strains. Based on these results, we presume that the cultivars in Korea have developed by using numerous strains from other countries. In conclusion, the usage of wild strains for the development of new cultivars could improve the adaptability of L. edodes to biotic and abiotic stress.

송수신 다이버시티 시스템에서의 위상잡음 영향 분석 (Analysis of Phase Noise Effects in Transceiver Diversity Systems)

  • 이승룡;이종길
    • 한국정보통신학회:학술대회논문집
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    • 한국해양정보통신학회 2006년도 춘계종합학술대회
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    • pp.643-646
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    • 2006
  • OFDM 시스템은 고속 데이터 전송 능력 및 효율적인 주파수 대역 이용 특성 때문에 그 활용 가능성이 날로 커지고 있다. 그러나 OFDM 시스템은 위상잡음에 매우 민감한 특성을 보이는데 시스템 위상잡음의 정도에 따라 직교성 상실에 의한 반송파 간섭 및 전체적인 시스템 잡음의 증가를 초래할 수 있다. 따라서 이러한 위상 잡음의 영향을 분석하기 위하여 위상잡음의 분포특성 및 크기를 모델링하고 이러한 위상잡음의 변화에 따른 시스템 성능의 열화정도를 분석하였다. 특히 본 논문에서는 비교적 간단한 송신 및 수신 다이버시티 적용 시스템에서의 위상잡음에 의한 성능열화 정도를 분석하였다.

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Taxonomic Review of the Genus Echinochloa in Korea (II): Inferred from Simple Sequence Repeats

  • Lee, Jeongran;Kim, Chang-Seok;Lee, In-Yong
    • Weed & Turfgrass Science
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    • 제3권3호
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    • pp.190-195
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    • 2014
  • Echinochloa (L.) P. Beauv. includes some of the noxious weeds, causing a serious yield loss when they are dominant in the fields. Identification of the Echinochloa is very difficult because many interspecific and intraspecific forms of the species are found. However, it is important to identify the species exactly and to know the genetic diversity of the species for effective weed management. This study was conducted to identify and summarize the Echinochloa species by comparing the genetic variation and relationship among Korean Echinochloa species using SSR. The genetic diversity of 107 individuals, including seven species were assessed using five SSR markers. UPGMA dendrogram generated two clades (I and II) and clade II divided again into two subclades (II-1 and II-2) whereas the model based genetic structure proposed four subpopulations. The two subpopulations were corresponded to clades I and II-1 and the other two were arranged to clade II-2 of the UPGMA dendrogram. We have concluded that E. colona and E. glabrescens might have not distributed in Korea. The biological varieties, praticola and echinata, of E. crus-galli should be treated as E. crus-galli. Korean Echinochloa should be summarized with four species, i.e., E. oryzicola, E. crus-galli, E. esculenta, and E. oryzoides.

Development and Characterization of 14 Microsatellite Markers for the Antarctic Midge Parochlus steinenii (Diptera, Chironomidae) in Maritime Antarctic

  • Kim, Hanna;Kang, Seunghyun;Kim, Hanul;Kim, Sanghee;Jung, Jongwoo
    • Animal Systematics, Evolution and Diversity
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    • 제33권2호
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    • pp.140-143
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    • 2017
  • A winged midge species, Parochlus steinenii is one of the most abundant species in Antarctica, which is distributed over a wide area from the South American continent to the South Shetland Islands in Antarctica. It was dispersed into islands in the South Shetland Islands from the South American continent, and it adapted to a variety of environments and settled. This species, therefore, is a good model organism to explain the evolutionary process of Antarctic terrestrial fauna. Nevertheless, there are few genetic studies on this species, which are necessary for understanding the genetic diversity, population structure, etc. Here, we developed and characterized 14 polymorphic microsatellite markers. The number of alleles per locus ranged from 2 to 5. The observed and expected heterozygosities were in the range of 0.024 to 0.561 and 0.024 to 0.535, respectively. Identifying genetic differences between populations, they are suitable markers for researches investigating genetic diversity and population structure of P. steinenii, which provide us with clues to dispersion, evolution and ecology of this species.

OTT 서비스 이용자의 구전의도에 영향을 미치는 요인에 관한 연구: 감정요인을 중심으로 (A Study on the Precedent Factors of WOM Intention in the Context of OTT Service: Focusing on Emotional Factors)

  • 김유정
    • 한국정보시스템학회지:정보시스템연구
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    • 제32권2호
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    • pp.63-85
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    • 2023
  • Purpose According to a recent survey, more than 90% of customers make purchase or use decisions for their products and services, primarily based on word-of-mouth(WOM) information (reviews, recommendations, ratings, etc.). However, few studies have explored what factors influence user's WOM intention in the context of OTT service. To address this gap, this study investigates the antecedent factors of WOM intention by adopting stimulus-organism-response (SOR) theory and pleasure arousal dominance (PAD) theory as a theoretical basis. Design/methodology/approach The research model consists of stimulus factors (diversity of original content, aesthetics, interactivity, personalization quality), emotional factors (pleasure, excitement, dominance), and behavioral factor (WOM intention). The research hypothesis was tested using the survey data collected from OTT service users of 305. Findings The result reveals that diversity of original content significantly affects on pleasure and arousal whereas it is not associated with dominance. Findings indicate that aesthetics positively influences pleasure, and interactivity is not associated with arousal. It is also proven that personalization quality has a positive effect on dominance. In addition, pleasure, arousal, and domination are proven to be positively and significantly related to WOM intention.

Identification of SNPs Related to 19 Phenotypic Traits Using Genome-wide Association Study (GWAS) Approach in Korean Wheat Mini-core Collection

  • Yuna Kang;Yeonjun Sung;Seonghyeon Kim;Changsoo Kim
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2020년도 춘계학술대회
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    • pp.120-120
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    • 2020
  • Based on the simple sequence repeat (SSR) marker, a Korean wheat core collection were established with 616 wheat accessions. Among them, the SNP genotyping for the entire genome was performed using DNA chip array to clarify the whole genome SNP profiles. Consequently, a total of 35,143 SNPs were found and we re-established a mini-core collection with 247 accessions. Population diversity and phylogenetic analysis revealed genetic diversity and relationships from the mini core set. In addition, genome-wide association study (GWAS) was performed on 19 phenotypic traits; ear type, awn length, culm length, ear length, awn color, seed coat color, culm color, ear color, loading, leaf length, leaf width, seeding stand, cold damage, weight, auricle, plant type, heading stage, maturation period, upright habit, and degree of flag leaf. The GWAS was performed using the fixed and random model circulating probability unification (FarmCPU), which identified 14 to 258 SNP loci related to 19 phenotypic traits. Our study indicates that this Korean wheat mini-core collection is a set of germplasm useful for basic and applied research with the aim of understanding and exploiting the genetic diversity of Korean wheat varieties.

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한국의 상업적 양송이 균주의 유전적 다양성 및 집단 구조 (Assessment of genetic diversity and population structure of commercial button mushroom (Agaricus bisporus) strains in Korea)

  • 이화용;안혜진;오연이;장갑열;공원식;류호진;정종욱
    • 한국버섯학회지
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    • 제17권4호
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    • pp.171-178
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    • 2019
  • 본 연구에서는 한국에서 개발한 23개의 양송이 품종과 42개의 도입품종의 유전적 다양성과 집단 구조를 SSR 마커를 이용하여 분석하였다. 양송이 품종의 NA는 약 13, HO는 약 0.59, HE는 약 0.74, PIC값은 약 0.71 이었다. 양송이 품종은 군집분석에 의하여 3개의 Group으로 구분되었고 다양한 국가의 품종으로 구성된 Group2의 다양성이 높았으며, 구조분석에 의하여 2개의 subpopulation으로 구분되었고, 품종의 수가 많은 Pop2의 다양성이 높았다. 한국의 양송이 품종들은 주로 Group 3에 분포하고, subpopulation 간 분포에는 큰 차이를 보이지 않았다. 본 연구의 결과는 양송이의 육종소재의 개발, 다양성 확보 등과 같은 품종의 개발과정에 이용될 수 있을 것이다.

레일레이 페이딩하에서 임펄시브 잡음을 갖는 기회전송 협동 다이버시티 시스템의 성능해석 (Performance Analysis of an Opportunistic Cooperative Diversity System with Impulsive Noise in Rayleigh Fading)

  • 김남수
    • 한국인터넷방송통신학회논문지
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    • 제10권6호
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    • pp.99-105
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    • 2010
  • 통신 시스템의 성능을 유도하기위하여 가장 많이 가정하는 잡음의 모델은 부가성 백색 잡음이다. 그러나 실제 통신 시스템을 사용하는 환경에서는 임펄시브 잡음이 더욱 현실적인 모델이기 때문에 최근에는 임펄시브 잡음 하에서의 통신 시스템의 성능을 분석하는 연구가 증가하고 있다. 따라서 본 논문에서는 최근에 집중적인 연구 주제가 되고 있는 협동다이버시티 시스템을 대상으로 하여 임펄시브 잡음하에서 시스템의 성능을 유도하였다. 특히 릴레이 방식으로 복조후 전송방식과 증폭후 전송방식을 사용하였을 때의 성능을 해석적으로 유도하고 비교하였다. 연구결과 레일레이 페이딩을 받는 무선 채널에서, 임펄시브 잡음의 평균 임펄스의 수가 감소할수록 잡음의 임펄시브 성분이 증가하고, 그 결과 신호 대 잡음비(SNR)가 큰 영역에서 시스템의 성능은 열화되었다. 그리고 동일한 조건에서 복조후 전송 릴레이를 채택한 협동 다이버시티 시스템이 증폭후 전송방식을 채택하였을 때보다 우수한 성능을 나타내었다.

Analysis of genetic diversity and population structure of rice cultivars from Africa, Asia, Europe, South America, and Oceania using SSR markers

  • Cheng, Yi;Cho, Young-Il;Chung, Jong-Wook;Ma, Kyung-Ho;Park, Yong-Jin
    • 한국작물학회지
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    • 제54권4호
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    • pp.441-451
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    • 2009
  • In this study, 29 simple sequence repeat (SSR) markers were used to analyze the genetic diversity and population structure of 125 rice accessions from 40 different origins in Africa, Asia, Europe, South America, and Oceania. A total of 333 alleles were detected, with an average of 11.5 per locus. The mean values of major allele frequency, expected heterozygosity, and polymorphism information content (PIC) for each SSR locus were 0.39, 0.73, and 0.70, respectively. The highest mean PIC was 0.71 for Asia, followed by 0.66 for Africa, 0.59 for South America, 0.53 for Europe, and 0.47 for Oceania. Model-based structure analysis revealed the presence of five subpopulations, which was basically consistent with clustering based on genetic distance. Some accessions were clearly assigned to a single population in which >70% of their inferred ancestry was derived from one of the model-based populations. In addition, 12 accessions (9.6%) were categorized as having admixed ancestry. The results could be used to understanding the genetic structure of rice cultivars from these regions and to support effective breeding programs to broaden the genetic basis of rice varieties.

Genetic Diversity and Population Structure of Korean Soybean Landrace [Glycine max(L.) Merr.]

  • Cho, Gyu-Taek;Lee, Jeong-Ran;Moon, Jung-Kyung;Yoon, Mun-Sup;Baek, Hyung-Jin;Kang, Jung-Hoon;Kim, Tae-San;Paek, Nam-Chon
    • Journal of Crop Science and Biotechnology
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    • 제11권2호
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    • pp.83-90
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    • 2008
  • Two hundred and sixty Korean soybean landrace accessions were analyzed for polymorphism at 92 simple sequence repeat(SSR) loci. The 995 identified alleles served as raw data for estimating genetic diversity and population structure. The number of alleles at a locus ranged from three to 27 with a mean of 10.4 alleles per locus. $F_{ST}$ values estimated by analysis of molecular variance(AMOVA) using SSR data set were 0.018, 0.027, and 0.016 for usage, collection site and maturity groups, respectively, indicating little genetic differentiation. The model-based clustering analysis placed the accessions into three clusters(K=3) with 0.0503 of $F_{ST}$, indicating moderate genetic differentiation. Duncan's Multiple Range Test at K = 3 on the basis of 18 quantitative traits revealed that one cluster was mainly differentiated from the other two clusters by seed related traits and the other two clusters were differentiated from each other by biochemical traits. Genetic structure of Korean soybean landraces was differentiated by model-based clustering and supported by their phenotypic traits in part. This preliminary study could be the first step towards more efficient germplasm management and utilization of soybean landraces and helpful in association studies between genotypic and phenotypic traits in Korean soybean landraces.

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