• Korean Journal of Mineralogy and Petrology
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• v.33 no.1
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• pp.19-28
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• 2020

Ranciéte is a hexagonal phyllomanganate mineral containing random Mn(IV) vacancies with hydrated Ca²⁺ cations charged balanced as interlayer cations. Its Mn²⁺ analogue is called takanelite, and ranciéite and takanelite are regarded as end-members of a solid solution series of (Ca²⁺,Mn²⁺)Mn₄O₉·nH₂O. Because the minerals are found as very small particles associated with other minerals, the crystal structures of the solid solution series have yet to be defined. In this research, we conducted classical molecular dynamics (MD) simulations of ranciéite and takanelite by varying the Mn²⁺/Ca²⁺ interlayer cation ratio to find relations between the interlayer cations and mineral structures. MD simulation results of chalcophanite group minerals are compared with experimental results to verify our method applied. Then, lattice parameters of ranciéite and takanelite models are presented along with detailed interlayer structures as to the distribution and coordination of cations and water molecules. This study shows the potentials of MD simulations in entangling complicated phyllomanganates structures.

• Korean Journal of Plant Taxonomy
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• v.44 no.1
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• pp.22-32
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• 2014

The petal and sepal micromorphology of five species of Glechoma (Lamiaceae) was investigated to evaluate their taxonomic significance, and a molecular phylogeny using the sequences of internal transcribed spacers (ITS) regions of nuclear ribosomal DNA was carried out to resolve their phylogenetic relationships. Stomatal complexes were mostly found in the inner and outer part of the sepal from all investigated taxa, and the size length of the guard cell was variable among the taxa. Five types of trichomes (uni-cellular non-glandular trichome, multi-cellular non-glandular trichome, short-stalked capitate glandular trichome, long-stalked capitate glandular trichome, and peltate glandular trichome) were variable among the taxa as well as their distribution and density. In molecular phylogenetic studies, the genus Glechoma was composed of three geographically distinct major monophyletic groups (Europe-U.S.A., China-Korea, Japan). G. longituba in Korea and China formed well-supported monophyletic group. G. hederacea in Europe and U.S.A. formed a monophyletic and well-supported clade with G. sardoa, which are endemic species in Italy, with G. hirsuta falling as a sister to this clade. However, G. grandis did not form any phylogenetic relationships with the remaining taxa. The ITS analyses provided taxonomic boundaries of taxa in Glechoma although the petal and sepal micromorphological characters provided weak evidences of the systematic value. As further studies, incorporating more DNA regions to the matrix including other additional morphological analysis will be significant to provide clearer taxonomic structure in Glechoma.

• Korean Journal of Plant Taxonomy
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• v.39 no.1
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• pp.48-54
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• 2009

We investigated the genetic diversity of an endemic rare species, Forsythia ovata Nakai by examining 93 ISSR amplicons in 84 individuals distributed among five populations. The overall percentage of polymorphic ISSR amplicons was 54.8% and mean number of amplicons per ISSR primer was 6.6. The amount of genetic diversity was relatively lower than other shrub species. The Mt. Seokbyeong and Mt. Seorak B populations had the highest level of genetic diversity. Although the Seokgae-jae population had the lowest level of genetic diversity, the population was genetically the most distinctive from the other populations. About 30.6% of the total variation was allocated between five populations, which was slightly higher than other shrub species. Such a pattern of genetic variation may have resulted from the limited distribution and small population sizes of F. ovata. The UPGMA dendrogram based on Nei's genetic distance showed some decisive geographic patterns. These results suggest that, in addition to the preservation of the natural stands, the conservation of larger number of populations with small number of individuals per population is more effective for the dynamic ex situ conservation and for maintaining the genetic diversity of F. ovata than smaller number of populations with large number of individuals.

• Korean Journal of Plant Taxonomy
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• v.43 no.4
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• pp.274-284
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• 2013

This study presents a survey on the bryophytes in Dongbaek-dongsan located at Seonheul Gotjawal on the north-eastern face of Mt. Halla in Jeju Island, Korea. A total of 85 taxa belonging to the Bryophyta (22 families 44 genera 62 species), Marchantiophyta (12 families 16 genera 23 species) were found. Among them, 3 moss species, Diphyscium perminutum Takaki, Racomitrium japonicum Dozy & Molk., and Isopterygium minutirameum (M$\ddot{u}$. Hal.) A. Jaeger. were new additions to the bryophyte flora of Korea. The liverwort index was 27.0%. Predominant life-form was weft. The rates for the bryophytes dominating in mesic to hygric sites were higher than for the bryophytes mainly observed in xeric habitats. We considered that the composition and distribution of species are affected by the different environmental factors according to the evergreen broad-leaved forests, wetlands and exposed spaces. Moreover, the rocks were the substrate type that play a major role in providing the micro-habitats for bryophytes in this area. Particularly, the bryophytes of swamps in this area were very unique and various for its limited space and showed plant communities with mosaic spatial pattern, along with vascular plants. We suggest more detailed and comprehensive studies on the swamps where endemic fern Mankyua chejuense B. -Y. Sun, M. H. Kim & C. H. Kim inhabits to provide valuable information for the conservation and restoration of the species and habitats.

• Korean Journal of Plant Taxonomy
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• v.43 no.3
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• pp.181-187
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• 2013

Genetic variation in Asaum misandrum, a woodland herb in Korea, was investigated based on allozyme analysis with starch gel electrophoresis. All of previously reported populations in Korea were sampled and seven loci from six enzymes were analyzed. Overall genetic variation of A. misandrum population showed considerably high levels of genetic variation within the species (A = 2.05, P = 71.4, $H_E$ = 0.294). A positive $F_{IS}$ value of A. misandrum indicated overall deficiency of heterozygotes, and a low $F_{ST}$ value (0.112) meant very little differentiation among populations. Factors contributing to the high levels of genetic diversity found within populations of A. misandrum include population maintenance via wide distribution range from Korea to Japan and primarily outcrossing breeding system. Although it showed moderate genetic diversity level, most habitats of the species were scattered and discontinuous. Besides, low numbers of individuals were found in the most habitats and individuals are collected frequently from the wild due to the unique shape of the flowers as well as the rarity of the species. Thus, there is a need to set up a reasonable conservation strategies including the maintenance mechanism of genetic diversity of A. misandrum.

• The Journal of Korean Medicine Ophthalmology and Otolaryngology and Dermatology
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• v.26 no.1
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• pp.19-34
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• 2013

Objective : This study was performed to evaluate the effect of immune reaction inductive substances such as PMA, LPS, DPE, DNCB and WP, the whitman pigra extracting substance at simultaneously on the translocation of $NF{\kappa}B$ towards to the nucleus and the mRNA expression patterns of various cytokine genes in THP-1 cells, monocytes of human. Methods : To analyze the cytokine genes expressions, the RT-PCR method was used, and measuring TNF-${\alpha}$ that had been secreted during cell culture by the ELISA method. The morphological changes were observed during THP-1 cell by a scanning electron microscope and the quantitative distribution of $NF{\kappa}B$ in the cell that was analyzed through immunocytochemistry and a confocal microscopy. Results : WP showed different influences onto the mRNA expression patterns of cytokine genes with PMA, LPS. DPE and DNCB according to the types of immune inductive substances in the THP-1 cells. Upon treating PMA and DPE on the THP-1 cells at the same time or either additionally treating WP thereon, the movement of $NF{\kappa}B$ increase towards the nucleus from cell cytoplasm was able to be observed. The expressions of IL-$1{\alpha}$ and IFN-${\gamma}$ induced by PMA and PMA+DNCB were suppressed by WP while the expression of TGF-${\beta}$ was promoted. Regarding the secretion pattern of TNF-${\alpha}$ according to the treatment of PMA, its secretion amount was incredibly increased by concurrent treatment of WP, however, in case of co-treatment of WP with PMA and DNCB, it was found that the secretion amount of TNF-${\alpha}$ decreased. Conclusions : In this study, the WP extracting substance was confirmed that it had an influence on expression patterns of cytokine genes according to the actions of a variety kinds of immune reaction inductive substances treated on the THP-1 cells. Especially, WP co-treatment with PMA and DNCB was suppressed the expression of inflammatory cytokines, such as IL-$1{\alpha}$, IFN-${\gamma}$ and TNF-${\alpha}$.

• Korean Journal of Optics and Photonics
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• v.18 no.4
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• pp.256-263
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• 2007

High NA objective design by using SELFOC materials was studied, and two kinds of objective for optical pick-up were designed. The SELFOC materials have radial gradient index distribution, and it gives additional degree of freedom in optical design. Therefore, we expect that optical design of high NA objective without aspheric surface will be possible. In this study, the variation of ms spot diameter was investigated as a function of quadratic constant and refractive index on axis for various combinations of axial thickness and entrance pupil diameter. For the survey, Code V was used for optimization and evaluation of the objective lenses. The result suggested that larger quadratic constant and higher refractive index on axis could give us better imaging performance for all combinations of axial thickness and pupil diameter. Based on the survey, we designed high NA objectives for DVR. There were two kinds of design solution consisting two spherical SELFOC lenses. The solution I had positive-positive lens configuration with short over-all-length, but it had poor off-axial performance compared with the solution II. The solution II had negative-positive lens configuration with good off-axial imaging performance. But the solution II had some disadvantages, long over-all-length and large diameter of the second lens.

• Development and Reproduction
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• v.5 no.2
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• pp.151-158
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• 2001

Genomic DNA from the blood of crucian carp(Carassius carassiu) from lake and aquaculture facility in Kunsan, Korea was extracted in order to identify genetic differences by polymerase chain reaction-randomly amplified polymorphic DNAs(PCR-RAPD). Out of 12 primers, 6 generated 266 highly reproducible RAPD markers, producing approximately 2.1 polymorphic bands per primer in crucian carp from lake. The degree of similarity varied from 0.18 to 0.76 as calculated by bandsharing analysis in crucian carp from lake. The RAPD outlines obtained with DNA of two different crucian carp populations from Kunsan were different(0.47 from lake and 0.70 from aquaculture facility, respectively). The electrophoretic analysis of polymerase chain reaction-randomly amplified polymorphic DNAs(PCR-RAPD) products showed high levels of similarity between different individuals in crucian carp from aquaculture facility. This result implies the genetic similarity due to raising in the same environmental condition or inbreeding within the crucian carp from aquaculture facility in Kunsan. In other words, crucian carp may have high levels of genome DNA diversity due to the introduction of the wild population from the other sites of Knsan even if it may be the geographical diverse distribution of this species. Generally, the RAPD polymorphism generated by these primers may be useful as a genetic marker for strain or population identification of important aquacultural fish species, crucian carp. However, in future, additional populations and sampling sites will be necessary to complement weak points.

• Korean Journal of Ecology and Environment
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• v.53 no.3
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• pp.255-264
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• 2020

The use of fishway has been investigated up to 2~9 years, continuously each month and over the long term that installed in 6 domestic rivers. The fish's use of fishway has been investigated as direct collection by trap in exit section of the fishway. The population structure of fish using 6 fishway and the fish that live in the river showed difference. About 2 to 7 species of fish took possession of more than 80% of total use of fish in fishways. This seems to be not the results of attraction flow in fishway but specialized result of physiology characteristic followed by species of fish. In addition, the distribution of fish species using fishway was different with the fishways installed in river. This difference seems to be consequence of the place that of the river and fishway types. Generally, the fish species were less and had high ratio of home migratory fish in vertical slot type fishway, which shows relatively fast velocity of water flow. This analysis result of major fish species using fishway can be used in planning fishway and to choose major targeted species for the planning.

• Applied Microscopy
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• v.25 no.4
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• pp.62-70
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• 1995

Rat liver sinusoids were observed by scanning electron microscopy. The sinusoids were provided with fenestrations which were divided into three types; small, medium-sized and large. The small fenestrations were usually gathered into clusters. The medium-sized fenestrations were either individually organized or in the cluster of small fenestrations. The large fenestrations were usually accompanied by small or medium-sized fenestrations. The lobule was divided into three zones; peripheral, intermediate and central, according to the distribution pattern of the fenestrations. The sinusoid providing with small fenestrations (type I) were predominant in the peripheral zone. The sinusoid showing medium-sized fenestrations (type II) were frequently observed in the central zone. The sinusoid having large fenestrations (type III) were abundant in the intermediate zone. This evidence indicate that the sinusoidal fenestrations become larger toward the intermediate zone from the peripheral zone of the lobule and progressively smaller toward the central zone. However, the fenestrations observed in the central zone seem to be larger than those seen in the peripheral zone of the lobule.