• Title/Summary/Keyword: Dimensionality Reduction

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Evaluation of Histograms Local Features and Dimensionality Reduction for 3D Face Verification

  • Ammar, Chouchane;Mebarka, Belahcene;Abdelmalik, Ouamane;Salah, Bourennane
    • Journal of Information Processing Systems
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    • v.12 no.3
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    • pp.468-488
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    • 2016
  • The paper proposes a novel framework for 3D face verification using dimensionality reduction based on highly distinctive local features in the presence of illumination and expression variations. The histograms of efficient local descriptors are used to represent distinctively the facial images. For this purpose, different local descriptors are evaluated, Local Binary Patterns (LBP), Three-Patch Local Binary Patterns (TPLBP), Four-Patch Local Binary Patterns (FPLBP), Binarized Statistical Image Features (BSIF) and Local Phase Quantization (LPQ). Furthermore, experiments on the combinations of the four local descriptors at feature level using simply histograms concatenation are provided. The performance of the proposed approach is evaluated with different dimensionality reduction algorithms: Principal Component Analysis (PCA), Orthogonal Locality Preserving Projection (OLPP) and the combined PCA+EFM (Enhanced Fisher linear discriminate Model). Finally, multi-class Support Vector Machine (SVM) is used as a classifier to carry out the verification between imposters and customers. The proposed method has been tested on CASIA-3D face database and the experimental results show that our method achieves a high verification performance.

Design of Gas Identification System with Hierarchical Rule base using Genetic Algorithms and Rough Sets (유전 알고리즘과 러프 집합을 이용한 계층적 식별 규칙을 갖는 가스 식별 시스템의 설계)

  • Bang, Yonug-Keun;Byun, Hyung-Gi;Lee, Chul-Heui
    • The Transactions of The Korean Institute of Electrical Engineers
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    • v.61 no.8
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    • pp.1164-1171
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    • 2012
  • Recently, machine olfactory systems as an artificial substitute of the human olfactory system are being studied actively because they can scent dangerous gases and identify the type of gases in contamination areas instead of the human. In this paper, we present an effective design method for the gas identification system. Even though dimensionality reduction is the very important part, in pattern analysis, We handled effectively the dimensionality reduction by grouping the sensors of which the measured patterns are similar each other, where genetic algorithms were used for combination optimization. To identify the gas type, we constructed the hierarchical rule base with two frames by using rough set theory. The first frame is to accept measurement characteristics of each sensor and the other one is to reflect the identification patterns of each group. Thus, the proposed methods was able to accomplish effectively dimensionality reduction as well as accurate gas identification. In simulation, we demonstrated the effectiveness of the proposed methods by identifying five types of gases.

EFMDR-Fast: An Application of Empirical Fuzzy Multifactor Dimensionality Reduction for Fast Execution

  • Leem, Sangseob;Park, Taesung
    • Genomics & Informatics
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    • v.16 no.4
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    • pp.37.1-37.3
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    • 2018
  • Gene-gene interaction is a key factor for explaining missing heritability. Many methods have been proposed to identify gene-gene interactions. Multifactor dimensionality reduction (MDR) is a well-known method for the detection of gene-gene interactions by reduction from genotypes of single-nucleotide polymorphism combinations to a binary variable with a value of high risk or low risk. This method has been widely expanded to own a specific objective. Among those expansions, fuzzy-MDR uses the fuzzy set theory for the membership of high risk or low risk and increases the detection rates of gene-gene interactions. Fuzzy-MDR is expanded by a maximum likelihood estimator as a new membership function in empirical fuzzy MDR (EFMDR). However, EFMDR is relatively slow, because it is implemented by R script language. Therefore, in this study, we implemented EFMDR using RCPP ($c^{{+}{+}}$ package) for faster executions. Our implementation for faster EFMDR, called EMMDR-Fast, is about 800 times faster than EFMDR written by R script only.

Main SNP Identification of Hanwoo Carcass Weight with Multifactor Dimensionality Reduction(MDR) Method (MULTIFACTOR DIMENSIONALITY REDUCTION(MDR)을 이용한 한우 도체중에서의 주요 SNP 규명)

  • Lee, Jea-Young;Kim, Dong-Chul
    • The Korean Journal of Applied Statistics
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    • v.21 no.1
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    • pp.53-63
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    • 2008
  • It is commonly believed that disease of human or economic traits of livestock are caused not by single gene acting alone, but by multiple genes interacting with one an-other. This issue is difficult due to the limitations of parametric statistical method like as logistic regression for detection of gene effects that are dependent solely on interactions with other genes and with environmental exposures. Multifactor dimensionality reduction (MDR) nonparametric statistical method, to improve the identification of single nucleotide polymorphism (SNP) associated with the Hanwoo(Korean cattle) carcass cold weight, is applied and compared with ANOVA results.

A study on interaction effect among risk factors of delirium using multifactor dimensionality reduction method

  • Lee, Jong-Hyeong;Lee, Yong-Won;Lee, Yoon-Seok;Lee, Jea-Young
    • Journal of the Korean Data and Information Science Society
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    • v.22 no.6
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    • pp.1257-1264
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    • 2011
  • Delirium is a neuropsychiatric disorder accompanying symptoms of hallucination, drowsiness, and tremors. It has high occurrence rates among elders, heart disease patients, and burn patients. It is a medical emergency associated with increased morbidity and mortality rates. That s why early detection and prevention of delirium ar significantly important. And This mental illness like delirium occurred by complex interaction between risk factors. In this paper, we identify risk factors and interactions between these factors for delirium using multi-factor dimensionality reduction (MDR) method.

A Classification Method Using Data Reduction

  • Uhm, Daiho;Jun, Sung-Hae;Lee, Seung-Joo
    • International Journal of Fuzzy Logic and Intelligent Systems
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    • v.12 no.1
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    • pp.1-5
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    • 2012
  • Data reduction has been used widely in data mining for convenient analysis. Principal component analysis (PCA) and factor analysis (FA) methods are popular techniques. The PCA and FA reduce the number of variables to avoid the curse of dimensionality. The curse of dimensionality is to increase the computing time exponentially in proportion to the number of variables. So, many methods have been published for dimension reduction. Also, data augmentation is another approach to analyze data efficiently. Support vector machine (SVM) algorithm is a representative technique for dimension augmentation. The SVM maps original data to a feature space with high dimension to get the optimal decision plane. Both data reduction and augmentation have been used to solve diverse problems in data analysis. In this paper, we compare the strengths and weaknesses of dimension reduction and augmentation for classification and propose a classification method using data reduction for classification. We will carry out experiments for comparative studies to verify the performance of this research.

Classification of High Dimensionality Data through Feature Selection Using Markov Blanket

  • Lee, Junghye;Jun, Chi-Hyuck
    • Industrial Engineering and Management Systems
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    • v.14 no.2
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    • pp.210-219
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    • 2015
  • A classification task requires an exponentially growing amount of computation time and number of observations as the variable dimensionality increases. Thus, reducing the dimensionality of the data is essential when the number of observations is limited. Often, dimensionality reduction or feature selection leads to better classification performance than using the whole number of features. In this paper, we study the possibility of utilizing the Markov blanket discovery algorithm as a new feature selection method. The Markov blanket of a target variable is the minimal variable set for explaining the target variable on the basis of conditional independence of all the variables to be connected in a Bayesian network. We apply several Markov blanket discovery algorithms to some high-dimensional categorical and continuous data sets, and compare their classification performance with other feature selection methods using well-known classifiers.

The Impact of the PCA Dimensionality Reduction for CNN based Hyperspectral Image Classification (CNN 기반 초분광 영상 분류를 위한 PCA 차원축소의 영향 분석)

  • Kwak, Taehong;Song, Ahram;Kim, Yongil
    • Korean Journal of Remote Sensing
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    • v.35 no.6_1
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    • pp.959-971
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    • 2019
  • CNN (Convolutional Neural Network) is one representative deep learning algorithm, which can extract high-level spatial and spectral features, and has been applied for hyperspectral image classification. However, one significant drawback behind the application of CNNs in hyperspectral images is the high dimensionality of the data, which increases the training time and processing complexity. To address this problem, several CNN based hyperspectral image classification studies have exploited PCA (Principal Component Analysis) for dimensionality reduction. One limitation to this is that the spectral information of the original image can be lost through PCA. Although it is clear that the use of PCA affects the accuracy and the CNN training time, the impact of PCA for CNN based hyperspectral image classification has been understudied. The purpose of this study is to analyze the quantitative effect of PCA in CNN for hyperspectral image classification. The hyperspectral images were first transformed through PCA and applied into the CNN model by varying the size of the reduced dimensionality. In addition, 2D-CNN and 3D-CNN frameworks were applied to analyze the sensitivity of the PCA with respect to the convolution kernel in the model. Experimental results were evaluated based on classification accuracy, learning time, variance ratio, and training process. The size of the reduced dimensionality was the most efficient when the explained variance ratio recorded 99.7%~99.8%. Since the 3D kernel had higher classification accuracy in the original-CNN than the PCA-CNN in comparison to the 2D-CNN, the results revealed that the dimensionality reduction was relatively less effective in 3D kernel.

Gene-gene interaction of CCND1, ESR1 and CDK7 on the risk of breast cancer detected by multifactor dimensionality reduction and logistic regression (유방암과 CCND1, ESR1, CDK7 유전자 다형성의 상호작용; 로지스틱 회귀분석과 multifactor dimensionality reduction(MDR)의 분석 비교)

  • Choe Ji-Yeop;Ritchie Marylyn D.;Motsinger Alison A.;Lee Gyeong-Mu;No Dong-Yeong;Yu Geun-Yeong;Moore Jason H.;Gang Dae-Hui
    • 대한예방의학회:학술대회논문집
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    • 2004.10a
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    • pp.40.1-40.1
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    • 2004
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Major SNP Marker Identification with MDR and CART Application

  • Lee, Jea-Young;Choi, Yu-Mi
    • Communications for Statistical Applications and Methods
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    • v.15 no.2
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    • pp.265-271
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    • 2008
  • It is commonly believed that diseases of human or economic traits of livestock are caused not by single genes acting alone, but multiple genes interacting with one another. This issue is difficult due to the limitations of parametric-statistic methods of gene effects. So we introduce multifactor-dimensionality reduction(MDR) as a methods for reducing the dimensionality of multilocus information. The MDR method is nonparametric (i. e., no hypothesis about the value of a statistical parameter is made), model free (i. e., it assumes no particular inheritance model) and is directly applicable to case-control studies. Application of the MDR method revealed the best model with an interaction effect between the SNPs, SNP1 and SNP3, while only one main effect of SNP1 was statistically significant for LMA (p < 0.01) under a general linear mixed model.