• Title/Summary/Keyword: Database server

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IntoPub: A Directory Server for Bioinformatics Tools and Databases

  • Jung, Dong-Soo;Kim, Ji-Han;Lee, Sang-Hyuk;Lee, Byung-Wook
    • Interdisciplinary Bio Central
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    • v.3 no.3
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    • pp.12.1-12.3
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    • 2011
  • Bioinformatics tools and databases are useful for understanding and processing various biological data. Numerous resources are being published each year. It is not a trivial task to find up-to-date relevant tools and databases. Moreover, no server is available to provide comprehensive coverage on bioinformatics resources in all biological fields. Here, we present a directory server called IntoPub that provides information on web resources. First, we downloaded XML-formatted abstracts containing web URLs from the NCBI PubMed database by using 'ESearch-EFetch' function in the NCBI E-utilities. The information is obtained from abstracts in the PubMed by extracting 'www' or 'http' prefixes. Then, we cu-rate the downloaded abstracts both in automatic and manual fashion. As of July 2011, the IntoPub database has 12,118 abstracts containing web URLs from 174 journals. Our anal-ysis shows that the number of abstracts containing web resources has increased signifi-cantly every year. The server has been tested by many biologists from several countries to get opinion on user satisfaction, usefulness, practicability, and ease of use since January 2010. In the IntoPub web server, users can easily find relevant bioinformatics resources, as compared to searching in PubMed. IntoPub will continue to update and incorporate new web resources from PubMed and other literature databases. IntoPub, available at http://into.kobic.re.kr/, is updated every day.

The APIs Design for the Database Management of the Network Game Using Design Patterns (디자인 패턴을 적용한 네트워크 게임의 DB 관리 APIs 설계)

  • Kim Jong-Soo;Kwon Oh-Jun;Kim Tai-Suk
    • Journal of Korea Multimedia Society
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    • v.9 no.1
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    • pp.101-108
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    • 2006
  • Developing a network game that is serviced on the internet requires a lot of work, time and manpower. Therefore, it is important to design a game in such a way so that existing design codes could be used. The database for the multi-player network game is accessed from many clients. To manage the resource effectively, it is required to design the APIs to be minimized the database access and to be dealt with the related data efficiently. For this, it is needed to apply the object-oriented design for the related software modules. In the paper, we propose the design patterns of GoF to implement the APIs thatis needed to deal with the database resource. The database design through the analysis of some game's GUI has the advantage to create the optimized schema set more quickly, because it minimize the review step and the modification step of the database design generally. In addition, we apply to the design patterns of GoF for the APIs design of the server-side database. These reduce the times of the program call between the game server and the database server. These also make easily the maintenance for the already developed APIs, and it makes easily the addition of new APIs.

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The practical use with online database program of cosmetics' raw materials. (화장품원료 온라인 데이터베이스 구축과 활용)

  • Jeon Sang-hoon;Kim Ju-Duck
    • Journal of the Society of Cosmetic Scientists of Korea
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    • v.29 no.2 s.43
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    • pp.233-250
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    • 2003
  • We often use the KCID(Korean Cosmetic Ingredient Dictionary) and ICID(International Cosmetic Ingredient Dictionary) within cosmetics research and within their export and import. so far, we do not have a database of a cosmetics' raw materials. Because of this, we consume a lot of time to find the raw material data that is needed. This study constructs a cosmetics' raw material database and develops the program to retrieve it. We used a Linux machine as the equipment for this study and we used Apache web server, MySQL database server and PHP as the tools of this study. 11,817 kinds of raw materials data were registered as ICID, 866 kinds of raw materials data were registered as KCID and 28,008 kinds of raw materials data with registered trade name into the database. Also, The database was composed of the database of the association form. The database of the online form could ultimately reduce the task time as soon as it did its purpose. The product of this study can become a good basis of data to reconfigure. In the future, it can become a good database in relation with different databases.

Development of the Management Software and Construction of Database for the Genetic Resources of Silkworms (누에유전자원 관리프로그램 개발 및 정보 DB화)

  • 손봉희;강필돈;이상욱
    • Journal of Sericultural and Entomological Science
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    • v.43 no.1
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    • pp.29-32
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    • 2001
  • At present, more than 300 races of the Silkworm are conserved and used as valuable genetic resources. But because of the uneffectiveness of manual data management, faster and systematic data base construction is needed. So, development of silkworm genetic resources management program has been begun and the result can be practically used. When developing the program, Visual basic was used for data input system construction, and MS Access for database. IIS(Internet Information System) and ASP(Active Server Page) was also used for searching data and information with Internet Web Server and Web Browser which is comfortable for constructing database and providing information. Data input item consists of 46 practical characteristics such as race name, moltinism, larval period and pupation percentage etc.. And these characteristics are classified with qualitative and quantitative character. Photographs of silkworm, cocoon and other related items were scanned and the image data was recorded on the database.

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A Study on The Design of Network and Database Structure of The Integrated System for Power System Operational Planning and Analysis (전력수급계획 및 운용해석 종합시스템을 위한 네트워크 및 데이터베이스구조 설계에 관한 연구)

  • Ahn, Yang-Keun;Park, Si-Woo;Nam, Jae-Hyun
    • Proceedings of the KIEE Conference
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    • 1998.07c
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    • pp.1009-1011
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    • 1998
  • This paper presents a design of network and database structure of the integrated system for power system operational planning and analysis that will be more economical and stable of power system operation. An alias of this system is Highly Integrated Total Energy System(HITES). The Client/server model of HITES is designed as a remote data management model. The input/output-type of application programs and Oracle server is standardized. The separated user-databases from main-database strengthen security of HITES. It is plan to do that tables and relationships are defined by database designs. The connection of application program and DBMS of HITES will be tested through database design and data construction.

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A Scheme of Database Design and Management in School-zone System (스쿨존 시스템에서 데이터베이스 설계 및 관리 방안)

  • Kim, Kwan-Joong
    • Journal of the Korea Society of Computer and Information
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    • v.18 no.5
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    • pp.61-68
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    • 2013
  • In this paper, we propose a scheme of database management to administer gathered data in schoolzone system. By using image sensor and GPS sensor gathered image and coordination information is transferred to the system server through the networks that it is managed by the database to analyze the situation recognition. Schoolzone system implements the analysis of specific scenario to gathered data of database so that its results and corresponding implementation is reported to monitoring server and their results have been stored.

Design of Network-based Game Using the GoF Design Patterns

  • Kim Jong-Soo;Kim Tai-Suk
    • Journal of Korea Multimedia Society
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    • v.9 no.6
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    • pp.742-749
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    • 2006
  • In the network-based game where it uses the Internet infrastructure, the implementation is possible with the various methods. Such Applications are developed in the multi-tired architecture. There are many cases for the server to be separated from the hardware or the software. In this case, a lot of applications make the distributed process possible and are made as the multi-tiered architecture to develop the reusability of the existing software module. Especially, it is mostly general to separate for the case of a database server to a new tier. One of the important points of multi-tiered server side applications is security and because of this, it is difficult to share the related data about the design skill. Using design patterns, it gives help in reusing the existing written-code for the design of the game that needs a lot of money and time. Design Patterns are related to the software reuse. For the development of more efficient games, if well-defined design patterns are provided to the developers, then it would make more easy advanced game API and make possible the framework for the game development based on the API Through the analysis of the general network-based game currently servicing in the Internet, in this paper, we discuss how to implement a business logic tier using database system among the server side architectures. The main objective of this article is to show an efficient APIs(Application Programming Interfaces) design method which can be used to manage the data that must be saved to the database system among the packets that client/server have to be exchange.

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Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server

  • Jung, Sunghoon;Bae, Se-Eun;Ahn, Insung;Son, Hyeon S.
    • Genomics & Informatics
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    • v.11 no.3
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    • pp.155-160
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    • 2013
  • Structural information has been a major concern for biological and pharmaceutical studies for its intimate relationship to the function of a protein. Three-dimensional representation of the positions of protein atoms is utilized among many structural information repositories that have been published. The reliability of the torsional system, which represents the native processes of structural change in the structural analysis, was partially proven with previous structural alignment studies. Here, a web server providing structural information and analysis based on the backbone torsional representation of a protein structure is newly introduced. The web server offers functions of secondary structure database search, secondary structure calculation, and pair-wise protein structure comparison, based on a backbone torsion angle representation system. Application of the implementation in pair-wise structural alignment showed highly accurate results. The information derived from this web server might be further utilized in the field of ab initio protein structure modeling or protein homology-related analyses.

Design and Implementation of School Affairs Management System using PHP on the Internet (인터넷 상에서 PHP를 이용한 학사관리 시스템의 설계 및 구현)

  • Moon, Jin-Yong;Koo, Yong-Wan
    • The Transactions of the Korea Information Processing Society
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    • v.7 no.10
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    • pp.3148-3154
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    • 2000
  • In this paper. the design and implementationof the on-line registration system for the school affairs is described. The environments for the system configurations include a PC server under Linux Iperating System. Apache Web-server, and MySQL as database engine. In addition, PHP, which becomes a popular Internet server-based script language lately, is used to implement a real-time database. In order to avoid overload problems during short-term registration period, which deconstraces the typical surge of traffics, the proposed system is designed to minimize the unnecessary interfacing tasks. On administrator side task, the sytem is designed to have environments by separating the dechcated server that restricts the scope of specific database thasks. In doing so, it become possibal to build an optical system by distributing, balancing the transaction load, maintainimg the security and efficient administrative tasks.

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Oil Spill Response System using Server-client GIS

  • Kim, Hye-Jin;Lee, Moon-Jin;Oh, Se-Woong
    • Journal of Navigation and Port Research
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    • v.35 no.9
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    • pp.735-740
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    • 2011
  • It is necessary to develop the one stop system in order to protect our marine environment rapidly from oil spill accident. The purpose of this study is to develop real time database for oil spill prediction modeling and implement real time prediction modelling with ESI and server-client GIS based user interface. The existing oil spill prediction model cannot provide one stop information system for public and government who should protect sea from oil spill accident. The development of multi user based information system permits integrated handling of real time meteorological data from external ftp. A server-client GIS based model is integrated on the basis of real time database and ESI map to provide the result of the oil spill prediction model. End users can access through the client interface and request analysis such as oil spill prediction and GIS functions on the network as their own purpose.