• Journal of Animal Science and Technology
• /
• v.63 no.6
• /
• pp.1232-1246
• /
• 2021

Recently, the cattle genome sequence has been completed, followed by developing a commercial single nucleotide polymorphism (SNP) chip panel in the animal genome industry. In order to increase statistical power for detecting quantitative trait locus (QTL), a number of animals should be genotyped. However, a high-density chip for many animals would be increasing the genotyping cost. Therefore, statistical inference of genotype imputation (low-density chip to high-density) will be useful in the animal industry. The purpose of this study is to investigate the effect of the reference population size and marker density on the imputation accuracy and to suggest the appropriate number of reference population sets for the imputation in Hanwoo cattle. A total of 3,821 Hanwoo cattle were divided into reference and validation populations. The reference sets consisted of 50k (38,916) marker data and different population sizes (500, 1,000, 1,500, 2,000, and 3,600). The validation sets consisted of four validation sets (Total 889) and the different marker density (5k [5,000], 10k [10,000], and 15k [15,000]). The accuracy of imputation was calculated by direct comparison of the true genotype and the imputed genotype. In conclusion, when the lowest marker density (5k) was used in the validation set, according to the reference population size, the imputation accuracy was 0.793 to 0.929. On the other hand, when the highest marker density (15k), according to the reference population size, the imputation accuracy was 0.904 to 0.967. Moreover, the reference population size should be more than 1,000 to obtain at least 88% imputation accuracy in Hanwoo cattle.

• Journal of Korean Society of Transportation
• /
• v.24 no.7 s.93
• /
• pp.27-40
• /
• 2006

The traffic information is provided, which based on the volume of traffic, speed, occupancy collected through the currently operating Vehicle Detector System(VDS). In addition to the trend in utilization fold of traffic information is increasing gradually with the applied various fields and users. Missing data in Vehicle detector data means series of data transmitted to controller without specific property. The missing data does not have a data property, so excluded at the whole data Process Hence, increasing ratio of missing data in VDS data inflicts unreliable representation of actual traffic situation. This study presented the imputation process due out which applied the methodologies that utilized adjacent stations reference and historical data utilize about missing data. Applied imputation process methodologies to VDS data or SeoHaeAn/Kyongbu Expressway, currently operation VDS, after processes at missing data ratio of an option. Imputation process held presented to per lane-30seconds-period, and morning/afternoon/daily time scope ranges classified, and analyzed an error of imputed data preparing for actual data. The analysis results, an low error occurred relatively in the results of the imputation process way that utilized a historical data compare with adjacent stations reference methods.

• The Journal of The Korea Institute of Intelligent Transport Systems
• /
• v.13 no.3
• /
• pp.66-77
• /
• 2014

UTIS(Urban Traffic Information System) directly collects link travel time in urban area by using probe vehicles. Therefore it can estimate more accurate link travel speed compared to other traffic detection systems. However, UTIS includes some missing data caused by the lack of probe vehicles and RSEs on road network, system failures, and other factors. In this study, we suggest a new model, based on k-NN algorithm, for imputing missing data to provide more accurate travel time information. New imputation model is an adaptive k-NN which can flexibly adjust the number of nearest neighbors(NN) depending on the distribution of candidate objects. The evaluation result indicates that the new model successfully imputed missing speed data and significantly reduced the imputation error as compared with other models(ARIMA and etc). We have a plan to use the new imputation model improving traffic information service by applying UTIS Central Traffic Information Center.

• Communications for Statistical Applications and Methods
• /
• v.16 no.6
• /
• pp.925-936
• /
• 2009

There very many approaches to impute missing values in the iid. case. However, it is hardly found the imputation techniques in the Markov random field(MRF) case. In this paper, we show that the imputation under MRF is just to impute by fitting the normal mixture model(NMM) under several practical assumptions. Our multivariate normal mixture model based approaches under MRF is applied to impute the missing pixel values of 3-variate (R, G, B) color image, providing a technique to smooth the imputed values.

• The Korean Journal of Applied Statistics
• /
• v.18 no.3
• /
• pp.597-606
• /
• 2005

The nonresponse in sample survey causes a problem when it comes time to analyze dataset in public-use files where the user has only complete-data methods available and has limited information about the reasons for nonresponse. Recently imputation for nonresponse is becoming a standard approach for handling nonresponse and various imputation methods have been devised . However, most imputation methods concern with continuous traits while many interesting features are measured by binary or ordered categorical scales in sample survey. In this note. an imputation method for ignorable nonresponse in binary or ordered categorical traits is considered.

• The Korean Journal of Applied Statistics
• /
• v.21 no.6
• /
• pp.1109-1116
• /
• 2008

Biplots are the multivariate analogue of scatter plots. They are useful for giving a graphical description of the data matrix, for detecting patterns and for displaying results found by more formal methods of analysis. Nevertheless, when some values are missing in data matrix, most biplots are not directly applicable. In particular, we are interested in the shape variability of principal component biplot which is the most popular in biplots with missing values. For this, we estimate the missing data using the EM algorithm and mean imputation according to missing rates. Even though we estimate missing values of biplot of incomplete data, we have different shapes of biplots according to the imputation methods and missing rates. Therefore we propose a RMS(root mean square) for measuring and comparing the shape variability between the original biplots and the estimated biplots.

• Asian Pacific Journal of Cancer Prevention
• /
• v.17 no.10
• /
• pp.4567-4575
• /
• 2016

A number of studies have evidenced the effect of modifiable lifestyle factors such as diet, breastfeeding and nutritional status on breast cancer risk. However, none have addressed the missing data problem in nutritional epidemiologic research in South America. Missing data is a frequent problem in breast cancer studies and epidemiological settings in general. Estimates of effect obtained from these studies may be biased, if no appropriate method for handling missing data is applied. We performed Multiple Imputation for missing values on covariates in a breast cancer case-control study of $C{\acute{o}}rdoba$ (Argentina) to optimize risk estimates. Data was obtained from a breast cancer case control study from 2008 to 2015 (318 cases, 526 controls). Complete case analysis and multiple imputation using chained equations were the methods applied to estimate the effects of a Traditional dietary pattern and other recognized factors associated with breast cancer. Physical activity and socioeconomic status were imputed. Logistic regression models were performed. When complete case analysis was performed only 31% of women were considered. Although a positive association of Traditional dietary pattern and breast cancer was observed from both approaches (complete case analysis OR=1.3, 95%CI=1.0-1.7; multiple imputation OR=1.4, 95%CI=1.2-1.7), effects of other covariates, like BMI and breastfeeding, were only identified when multiple imputation was considered. A Traditional dietary pattern, BMI and breastfeeding are associated with the occurrence of breast cancer in this Argentinean population when multiple imputation is appropriately performed. Multiple Imputation is suggested in Latin America's epidemiologic studies to optimize effect estimates in the future.

• Journal of Korean Society of Transportation
• /
• v.26 no.4
• /
• pp.241-250
• /
• 2008

With the ever-growing amount of traffic, there is an increasing need for good quality travel time information. Various existing outlier filtering and missing data imputation algorithms using AVI data for interrupted and uninterrupted traffic flow have been proposed. This paper is devoted to development of an outlier filtering and missing data imputation algorithm by using Toll Collection System (TCS) data. TCS travel time data collected from August to September 2007 were employed. Travel time data from TCS are made out of records of every passing vehicle; these data have potential for providing real-time travel time information. However, the authors found that as the distance between entry tollgates and exit tollgates increases, the variance of travel time also increases. Also, time gaps appeared in the case of long distances between tollgates. Finally, the authors propose a new method for making representative values after removal of abnormal and "noise" data and after analyzing existing methods. The proposed algorithm is effective.

• Communications for Statistical Applications and Methods
• /
• v.13 no.1
• /
• pp.101-111
• /
• 2006

One of the most widely used method of handling missingness in microarray data is the kNN(k Nearest Neighborhood) method. Recently Li and Gui (2004) suggested, so called PCR(Partial Cox Regression) method which deals with censored survival times and microarray data efficiently via kNN imputation method. In this article, we try to show that the way to treat missingness eventually affects the further statistical analysis.

• Journal of the Korean Statistical Society
• /
• v.31 no.4
• /
• pp.469-482
• /
• 2002

This paper suggests a new method of compensating for wave nonresponse in panel survey, which combines weighting adjustment and imputation. By deleting less frequent nonresponse patterns, we can get simplicity. A new mean estimator under the new combining method is provided and a limited simulation study employing a real data is conducted.