• Title/Summary/Keyword: Data Integration Search

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Microarray Data Sharing System (마이크로어레이 데이터 공유 시스템)

  • Yoon, Jee-Hee;Hong, Dong-Wan;Lee, Jong-Keun
    • The Journal of the Korea Contents Association
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    • v.9 no.8
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    • pp.18-31
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    • 2009
  • Improved reliability of microarray data and its reproducibility lead to recent increment in demand of data sharing and utilization among laboratories, but house-keeping and publicly opened microarray experimental data can hardly be accessed and utilized since they are in heterogeneous formats according to the various experimental methods and microarray platforms. In this paper, we propose a microarray sharing method which can easily retrieve and integrate microarray data from different experiment platforms, data formats, normalization methods, and analysis methods. Our system is based on web-service technology. The biologists of each site are able to search UDDI(Universal Description, Discovery, and Integration) registry, and download microarray data with common data structure of standard format recommended by MGED(Microarray Gene Expression Databases) society. The common data structure defined in this paper consists of IDF(Investigation Design Format), ADF(Array Design Format), SDRF(Sample and Relationship Format), and EDF(Expression Data Format). These components play role as templates to integrate microarray data with various structure and can be stored in standard formats such as MAGE-ML, MAGE-TAB, and XML Schema. In addition, our system provides advanced tools of automatic microarray data submitter and file manager to manipulate local microarray data efficiently.

Development of an Editor for Reference Data Library Based on ISO 15926 (ISO 15926 기반의 참조 데이터 라이브러리 편집기의 개발)

  • Jeon, Youngjun;Byon, Su-Jin;Mun, Duhwan
    • Korean Journal of Computational Design and Engineering
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    • v.19 no.4
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    • pp.390-401
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    • 2014
  • ISO 15926 is an international standard for integration of lifecycle data for process plants including oil and gas facilities. From the viewpoint of information modeling, ISO 15926 Parts 2 provides the general data model that is designed to be used in conjunction with reference data. Reference data are standard instances that represent classes, objects, properties, and templates common to a number of users, process plants, or both. ISO 15926 Parts 4 and 7 provide the initial set of classes, objects, properties and the initial set of templates, respectively. User-defined reference data specific to companies or organizations are defined by inheriting from the initial reference data and the initial set of templates. In order to support the extension of reference data and templates, an editor that provides creation, deletion and modification functions of user-defined reference data is needed. In this study, an editor for reference data based on ISO 15926 was developed. Sample reference data were encoded in OWL (web ontology language) according to the specification of ISO 15926 Part 8. iRINGTools and dot15926Editor were benchmarked for the design of GUI (graphical user interface). Reference data search, creation, modification, and deletion functions were implemented with XML (extensible markup language) DOM (document object model), and SPARQL (SPARQL protocol and RDF query language).

Cost-based Optimization of Composite Web Service Executions Using Intensional Results (내포 결과를 이용한 복합 웹 서비스 실행의 비용 기반 최적화)

  • Park, Chang-Sup
    • Journal of KIISE:Databases
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    • v.33 no.7
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    • pp.715-726
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    • 2006
  • Web service technologies provide a standard means for interoperation and integration of heterogeneous applications distributed over the Internet. For efficient execution of hierarchically interacting composite web services, this paper proposes an approach to distribute web service invocations over peer systems effectively, exploiting intensional XML data embedding external service calls as a result of well services. A cost-based optimization problem on the execution of web services using intensional results was formalized, and a heuristic search method to find an optimal solution and a greedy algorithm to generate an efficient invocation plan quickly were suggested in this paper. Experimental evaluation shows that the proposed greedy algorithm provides near-optimal solutions in an acceptable time even for a large number of Web services.

Integration of Protein-Protein Interaction Data and Design of Data Search System (단백질 상호작용 데이터 통합 및 자료 검색 시스템 설계)

  • Choi, Ji-Hye;Itgel, Bayarsaikhan;Oh, Se-Jong
    • Proceedings of the KAIS Fall Conference
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    • 2010.05b
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    • pp.1197-1200
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    • 2010
  • Post-genomic 시대에 접어들면서 단백질의 기능의 주석이 중요한 문제로 떠오르기 시작하였다. 이런 단백질 기능을 예측하기 위해 단백질 상호작용(Protein-Protein interaction) 데이터를 이용한 방법들이 지난 10여 년간 발표되어왔다. 단백질 상호작용(Protein-Protein interaction) 데이터는 단백질들 간의 서열 등의 특징을 이용해 상호간의 연결 관련성이 있는 단백질끼리의 관계를 네트워크로 나타낸 자료이다. 현재 이러한 단백질 상호작용(Protein-Protein interaction) 데이터들은 MIPS, DIP, BioGrid등 약 5~6군데에서 제공되고 있다. 각각의 데이터는 다른 형식을 가지고 있고, 중복되는 정보도 포함하고 있다. 여러 연구 방법에서 데이터를 사용할 때 한군데에서만 추출하기 보다는 여러 데이터에서 추출하는 경우가 많기 때문에 다른 형식의 데이터를 이용하는데 불필요한 수고가 들어가게 된다. 때문에 여러군데의 데이터를 한 가지 형식으로 맞추어 통합적으로 구축하여 연구 시 데이터 사용에 용이하도록 설계 하였다. 또한 발표된 단백질 기능 예측 방법에 대한 정리를 통해 앞으로의 연구를 하는데 있어서 필요한 자료를 얻고 열람할 수 있도록 설계하였다. 이를 통해 관련 연구를 하거나 관심이 있는 사람들의 데이터를 검색하는데 많은 도움이 될 것이다.

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Content planning for a ubiquitous wardrobe - Application of an RFID database - (유비쿼터스 워드로브 설계를 위한 콘텐츠 개발 - RFID 칩의 활용 -)

  • Lee, Woon-Young
    • The Research Journal of the Costume Culture
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    • v.22 no.2
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    • pp.313-325
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    • 2014
  • This study seeks to establish a ubiquitous wardrobe with a clothing management function through detailed and subdivided integration research. To create a database, a survey was conducted, and the output data were analyzed and used as the basic data. In particular, this study researched clothing management programs and companies' standards of clothing product classification systems. First, through an in-depth analysis centering on specialists, we established the contents of a ubiquitous wardrobe and used the concept of cloud computing to support the wardrobe contents and smart phone applications. Second, this research found significant differences between individuals, schools, and enterprises in their applications of, and the importance they attach to, design images. A detailed database composed of various categories was established to present the ubiquitous wardrobe contents with efficient functions. Third, we facilitated the search process by designating clothes with QR codes, which is one of the functions of contents. Fourth, the code numbers generated in the process of entering clothes into the database were utilized as RFID information as a way to arrange the products in a simpler manner. The ubiquitous wardrobe was constructed as a web-style hybrid, and its contents areavailable through mobile applications and QR codes.

An Integration Algorithm of X-tree and kd-tree for Efficient Retrieval of Spatial Database (공간 데이터베이스의 효율적인 검색을 위한 X-트리와 kd-트리의 병합 알고리즘)

  • Yoo, Jang-Woo;Shin, Young-Jin;Jung, Soon-Key
    • The Transactions of the Korea Information Processing Society
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    • v.6 no.12
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    • pp.3469-3476
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    • 1999
  • In spatial database based on spatial data structures, instead of one-dimensional indexing structure, new indexing structure which corresponds to multi-dimensional features of spatial objects is required. In order to meet those requirements, in this paper we proposed new indexing structure for efficient retrieval of spatial database by carrying through the feature analysis of conventional multi-dimensional indexing structures. To improve the sequential search method of supernodes in the conventional X-tree and to reduce the retrieval time in case of generating the huge supernode, we proposed a indexing structure integrating the kd-tree based on point index structure into the X-tree. We implemented the proposed indexing structure and analyzed its retrieval time according to the dimension and distribution of experimental data.

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Optimization of Detention Basin at Watershed Level Scale

  • Ngo, Thi Thuy;Yazdi, Jafar;Kim, Joong Hoon
    • Proceedings of the Korea Water Resources Association Conference
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    • 2015.05a
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    • pp.218-218
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    • 2015
  • Urbanization and waterworks construction in natural watershed have been causing higher flood risks in lowland areas. Detention basins have become one of the most efficient fundamental instruments for storm water and environmental management at watershed scale. Nowadays, there are many studies coupled numerical methods of flood routing with optimization algorithms to investigate factors that impact on the efficiency of detention basins in flood reduction in a watershed, such as detention basin location, size, and cost and watershed characteristics. Although these couplings have been become more widespread but cumbersome computation and hydraulic data requirement still are their limitations. To tackle the procedure efforts due to numerical integration and data collection, simple approach is proposed to primarily estimate effects of detention basins. The approach basis is the linear system theory applied to the solution of hydrologic flood routing. The paper introduces an analytical method for estimating detention effects deriving by recent studies and innovatively analyses this equation on fractal perspective. Then, an optimization technique is performed by applying harmony search algorithms (HSA) to optimize efficiency of detention basins at watershed scale. The location and size of upstream detention basin are simultaneously obtained. Finally, the proposed methodology, practically applied for a real watershed in Kan river, Iran.

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Intelligence Type Electronic Medical Examination Chart and Data Treatment of Cyber Doctor to Interconnect ASP and SQL (ASP와 SQL을 연동한 사이버닥터의 지능형 전자진료차트와 데이터처리)

  • Kim Seok-Soo
    • Journal of Digital Contents Society
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    • v.4 no.1
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    • pp.57-66
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    • 2003
  • This paper presents the content regarding electronic medical examination chart and data treatment for efficient medical examination and prompt treatment by realizing mutual conversation type remote medical examination system among 3 parties(patient, doctor, pharmacist) on internet base. This is an intelligence type remote medical examination system for both on-line and off-line mode to transcend time and space on the web being participated by anybody, which is cheap type to solve problems in existing remote medical examination system such as high price based on hardware, incompatibility, and so on. By interconnecting ASP and SQL on IIS 4.0 web server, database enables system integration for efficient data processing, on-line consultation between patient and doctor, medical examination on off-line, transmission of medical prescription to pharmacist designated by patient and preparation of medicine, semi-eternal storage of medical examination data owing to storage and search of medical examination data, exact medical examination and prescription using this medical examination data by patient and doctor, and so on.

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Development of Customized 3D Characters for Growth Management and Prediction of Adolescents Using Big Data (빅데이터를 활용한 청소년 성장관리와 예측을 위한 맞춤형 3D 캐릭터 개발 연구)

  • Choo, Hye-Jin;Ha, Seo-Ho
    • The Journal of the Korea Contents Association
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    • v.18 no.1
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    • pp.250-257
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    • 2018
  • Today, the integration of the rapid development of ICT and the smart devices moves our lives quickly into an online community environment through not only quick and easy information search but also various social media. Accordingly, individual activities in the smart media environment are pouring out vast quantities of data in many fields, accumulating a tremendous amount of data. The everyday data of individuals is reproducing different values from the previous ones, while suggesting new customized services that utilize them in various fields. Recently, big data utilization has attracted a great attention in the field of healthcare. Especially, development of healthcare service linked with mobile is expected to bring a new paradigm in this field. In this study, creation of a 3D avatar character model as a means to transfer information to individuals more efficiently is proposed in the development of mobile customized service for health promotion and growth prediction of children and adolescents, at the same time, an effective visual expression method to have a sense of immersion and unity is searched.

Development of Architecture Products Management System (아키텍처산출물 관리 시스템 개발)

  • Choi, Nam-Yong;Song, Young-Jae
    • The KIPS Transactions:PartD
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    • v.12D no.6 s.102
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    • pp.857-862
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    • 2005
  • MND(Ministry of National Defense) has developed MND AF(Ministry of National Defense Architecture Framework) and CADM(Core Architecture Data Model to guarantee interoperability among defense information systems. But, it is very difficult to manage architecture product documented through MND AF and CADM. So, there Is necessity for development of modeling tool and repository system which can develop architecture products and manage architecture product informations in common repository In this paper, we developed architecture product management system which supports development and management of meta model and architecture product of MND AF and CADM. Through architecture product management system architect of each agency can construct architecture product in a more effective and efficient way with modeling method and a user can search and refer useful architecture product informations using query function. Also, architecture product management system provides the basis for system integration and interoperability with integration, analysis and comparison of architecture product.