• Title/Summary/Keyword: DNA systematics

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First Report of Aphelenchoides bicaudatus (Nematoda: Aphelenchoididae) from South Korea

  • Kim, Jiyeon;Kim, Taeho;Park, Joong-Ki
    • Animal Systematics, Evolution and Diversity
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    • v.32 no.4
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    • pp.253-257
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    • 2016
  • The genus Aphelenchoides (Fischer, 1894) includes a diverse group of species, some of which are of economic importance. A. bicaudatus (Imamura, 1931) Filipjev and Schuurmans Stekhoven, 1941 is reported for the first time from South Korea, with a detailed redescription of the species. Specimens were collected from chrysanthemum (Chrysanthemum morifolium) leaves and shoot tips in South Korea. The species was identified by morphological traits and molecular sequencing. A bifurcated tail distinguishes A. bicaudatus from its congeneric species. To confirm species identification, we determined the partial 18S ribosomal DNA sequence of the specimens and compared with those obtained from other Aphelenchoides species available on GenBank.

Application of Cytochrome b Gene Sequences for Identification of Parrots from Korean Zoos

  • Kim, Jung-il;Do, Thinh Dinh;Lee, Duri;Yeo, Yonggu;Kim, Chang-Bae
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.3
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    • pp.216-221
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    • 2020
  • Parrots are common targets for illegal trade because of their beauty and high price. Accurate identification is necessary for the prevention of illegal trade and conservation of parrots. In the present study, mitochondrial markers of cytochrome b (CYTB) gene were used to identify parrot species from Korean zoos. Totally, 27 samples were collected from Seoul Zoo, Cheongju Zoo, and Uchi Zoo. After collection, total DNA of samples was extracted and used for PCR amplification. CYTB fragments were sequenced from all samples examined. The obtained sequences were used for GenBank blast, distance estimation, and phylogenetic analysis. All species were identified using CYTB sequences that determined 27 samples belong to 13 species in 7 genera, and 3 families. Our finding demonstrated the usefulness of CYTB sequences for identifying parrot species in Korean zoos.

Leptoplax doederleini (Polyplacophora: Acanthochitonidae) from South Korea

  • Shin, Youngheon;Park, Jina;Lee, Yucheol;Kim, Taeho;Park, Joong-Ki
    • Animal Systematics, Evolution and Diversity
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    • v.35 no.1
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    • pp.10-14
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    • 2019
  • Acanthochitonidae Pilsbry, 1893 is one of the chiton families characterized by 9 pairs of sutural tufts on a well-expanded girdle that overgrows plates. It is found in intertidal and subtidal zones worldwide. Of its eight genera, only two have been previously reported in South Korea: Acanthochitona Gray, 1821 and Notoplax H. Adams, 1862. Here we report Leptoplax doederleini (Thiele, 1909) as the first record of the genus Leptoplax in South Korea and describe and compare its morphological features with N. kaasi Hong, Dell'Angelo and Van Belle, 1990. In addition, we provide the partial sequence of the mitochondrial DNA cytochrome c oxidase subunit I gene as a DNA barcode sequence record.

DNA Barcoding of the Endangered Species Ellobium chinense (Mollusca, Gastropoda, Ellobiidae) from Coastal Areas of South Korea

  • Yi, Chang Ho;Jung, Tae Won;Kim, Il-Hun;Cho, In-Young;Kim, Min-Seop;Yoon, Moongeun;Kim, Won
    • Animal Systematics, Evolution and Diversity
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    • v.35 no.3
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    • pp.136-139
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    • 2019
  • The pulmonate gastropod Ellobium chinense (Pfeiffer, 1864) is an endangered marine species along the South Korean coasts due to habitat destruction and population declines. We sequenced the cytochrome c oxidase subunit 1 (COI) of 25 E. chinense specimens collected from five coastal sites in South Korea, and identified 16 unique haplotypes. The maximum intraspecific variation among individuals was 1.6%, while interspecific differences from another ellobiid species, Auriculastra duplicata (Pfeiffer, 1854), ranged from 21.9 to 23.0%. Our barcoding data will be useful to elucidate the phylogenetic relationships among pulmonate gastropods and infer the population genetic structure of E. chinense.

First Record of the Brackish Water Amphipod Jesogammarus (Jesogammarus) hinumensis (Amphipoda: Anisogammaridae) from Korea with DNA Barcode Analysis among Jesogammarus Species

  • Lee, Chi-Woo;Tomikawa, Ko;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.35 no.3
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    • pp.151-155
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    • 2019
  • Jesogammarus (Jesogammarus) hinumensis Morino, 1993 was discovered firstly from a brackish water region in Jeju Island, Korea. To identification of the specimens we conducted both of morphological and molecular analyses. This species is characterized by having large eyes and a robust seta on the mandibular palp article 1. The morphology of this Korean specimens was well matched with the original description without variation. The mitochondrial cytochrome c oxidase subunit I(COI) sequences of the present specimens were also completely identical to the sequences of J. (J.) hinumensis collected from the type locality of the species. Thus, we concluded that the Jesogammarus species from Jeju Island is J.(J.) hinumensis, based on both morphological and molecular data.

Taxonomical Study of Noteworthy Species of Botryosphaeria in Japan

  • Hattori, Yukako;Ando, Yuho;Sasaki, Atsuko;Uechi, Nami;Nakashima, Chiharu
    • Mycobiology
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    • v.49 no.2
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    • pp.122-132
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    • 2021
  • The reexamination of the fungal genus Botryosphaeria on 12 plant species of 10 families was carried out based on molecular phylogenetic analyses using the regions of translation elongation factor 1-α, β-tubulin, DNA-directed RNA polymerase II subunit, and internal transcribed spacer region of rDNA and morphological characteristics. Japanese isolates were divided into five clades and include Botryosphaeria dothidea, B. qingyuanensis, B. sinensis, and Botryosphaeria spp. Two species, B. qingyuanensis and B. sinensis have been newly added to the Japanese mycoflora, but their host plants are not specified. Botryosphaeria tenuispora isolated from Leucothoe fontanesiana and insect galls on fruits of Aucuba japonica has been proposed as a new species.

DNA Barcoding of Allobathynella yecheonensis (Bathynellacea: Parabathynellidae) from Interstitial Groundwater, South Korea

  • Ji, Su-Jung;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.38 no.4
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    • pp.283-286
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    • 2022
  • Bathynellacea is a stygobitic group that is commonly associated with subterranean habitats. Allobathynella Morimoto and Miura, 1957, which is a genus of parabathynellid Bathynellacea, has the widest range of distribution and is rich in species from the Korean peninsula among Korean Bathynellacea genera. The material of Allobathynella yecheonensis Park and Cho, 2016, was found in the type locality of interstitial groundwater in the Nakdonggang River in South Korea. In this study, we determined the sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) and nuclear 18S ribosomal DNA of A. yecheonensis and compared them with those of A. hongcheonensis, A. wonjuensis, and A. danyangensis. In addition, we provided photographs of A. yecheonensis and diagnosis including a note on morphological observations.

DNA Barcoding of Two Gonioctena Species (Coleoptera: Chrysomelidae) Described from the Korean Peninsula

  • Cho, Hee-Wook;Kim, Sang Ki
    • Animal Systematics, Evolution and Diversity
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    • v.37 no.3
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    • pp.225-228
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    • 2021
  • Eleven Gonioctena species have been recorded in the Korean Peninsula. Most species in the genus have very similar coloration and morphology. The male genitalia is generally used as the only reliable diagnostic character differentiating closely related species, but it is still difficult to identify females to species accurately. Here, we determined the COI barcodes of two Gonioctena species described from Korea and give morphological descriptions. The interspecific genetic divergence (Kimura 2-parameter) among the Gonioctena ranged from 0.073 to 0.138 and averaged 0.108. The pairwise genetic distance between the two Korean species(0.102) is similar to the average interspecific divergence. We predict that these analyses will help to resolve taxonomic issues and find cryptic species.

First Record of the Family Polygordiidae (Annelida: Polychaeta) in Korean Fauna

  • Jiseon Park;Taeseo Park;Jongwoo Jung
    • Animal Systematics, Evolution and Diversity
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    • v.39 no.4
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    • pp.309-313
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    • 2023
  • Polygordiidae is recorded as a new record in the Korean fauna. Twenty-three specimens of Polygordius pacificus were collected from the low intertidal zone with coarse sandy bottom on the eastern coasts of Korea. Morphologically, there was no doubt that the specimens are close to the holotype of P. pacificus, particularly due to the presence of elongated and longitudinal pygidial glands, and the length to width ratio. The prostomium of the Korean specimens have a rounded shape that is similar to subsequent research using scanning electron microscope. The DNA sequence comparison of the mitochondrial cytochrome c oxidase subunit I (COI) between Korean and Japanese population supports the identification of present specimens.

New Records of Three Tintinnopsis Species and Redescription of One Antetintinnopsis Species (Protozoa: Ciliophora) from Coastal Waters of Korea

  • Ji Hye Moon;Jae-Ho Jung
    • Animal Systematics, Evolution and Diversity
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    • v.40 no.1
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    • pp.1-15
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    • 2024
  • Our study aimed to investigate the diversity of tintinnid species in Korea by collecting samples from coastal waters. As a result, we identified and redescribed three newly recorded species of the genus Tintinnopsis Stein, 1867 and one previously recorded species of the genus Antetintinnopsis Wang et al., 2021 in Korea. The loricae morphology and molecular phylogeny based on the 18S rDNA sequences of these four were analyzed. Tintinnopsis kiaochowensis Yin, 1956 is characterized by having an irregular collar with spiral turns and an obconical-shaped bowl. Tintinnopsis orientalis Kofoid and Campbell, 1929 is characterized by the inverted bell-shaped lorica with size of 121-140×86-94 ㎛. Tintinnopsis parvula Jörgensen, 1912 is characterized by its narrower collar than bowl and acute angle of the bowl (39-75°). The recorded species, Antetintinnopsis gracilis (Kofoid and Campbell, 1929) Wang et al., 2021 is characterized by a cylindrical collar narrower than the bowl width and with a size of 98-131×37-46 ㎛.