• Title/Summary/Keyword: Cytochrome c oxidase subunit 1

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DNA Barcoding of Boccardiella hamata (Annelida: Polychaeta: Spionidae) in South Korea

  • Lee, Geon Hyeok;Yoon, Seong Myeong;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.3
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    • pp.268-273
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    • 2020
  • A spionid polychaete, Boccardiella hamata (Webster, 1879) has been found from mud in crevices between the shells of oysters and adherent substrates in South Korea. The sequences of mitochondrial DNA (mtDNA) cytochrome c oxidase subunit 1 (CO1), 16S ribosomal DNA (16S), and the nuclear 18S ribosomal DNA (18S) from Korean individuals of Boccardiella hamata were determined in the present study. The molecular analysis based on the 18S rRNA gene sequences showed clear separation among the spionid polychaete species, and the sequences of Korean and Japanese individuals are completely identical. The morphological diagnosis and photographs of B. hamata are also provided.

The First Record of the Marphysa victori (Polychaeta, Eunicida, Eunicidae) from Korea, with DNA Barcode Data

  • Kim, Hana;Kim, Keun-Yong;Phoo, War War;Kim, Chang-Hoon
    • Animal Systematics, Evolution and Diversity
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    • v.37 no.1
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    • pp.1-8
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    • 2021
  • A eunicid polychaete, Marphysa victori Lavesque, Daffe, Bonifácio & Hutchings, 2017 is described for the first time from the intertidal zones of the Korean coasts. It is characterized by having three types of pectinate chaetae (INS, isodont-narrow-slender; AWS, anodont-wide-slender; and AWT, anodont-wide-thick), appearance of pectinate chaetae from chaetiger 2, the chaetae consisted of pectinate and compound spinigers, and pygidium with one pair of pygidial cirri. In genetic analysis based on cytochrome c oxidase subunit I (COI), intra-specific genetic distance between the specimens of M. victori from its type locality, France and Korea are in the range of 0.000-0.013. This paper includes the morphological description and photographs of M. victori new to Korean fauna, with partial sequences of the mitochondrial COI as DNA barcode data on this species.

Molecular Phylogenetics of Centrocestus formosanus (Digenea: Heterophyidae) Originated from Freshwater Fish from Chiang Mai Province, Thailand

  • Wongsawad, Chalobol;Wongsawad, Pheravut;Sukontason, Kom;Maneepitaksanti, Worawit;Nantarat, Nattawadee
    • Parasites, Hosts and Diseases
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    • v.55 no.1
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    • pp.31-37
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    • 2017
  • This study aimed to investigate the morphology and reconstruct the phylogenetic relationships of Centrocestus formosanus originating from 5 species of freshwater fish, i.e., Esomus metallicus, Puntius brevis, Anabas testudineus, Parambassis siamensis, and Carassius auratus, in Chiang Mai province, Thailand. Sequence-related amplified polymorphism (SRAP) and phylogeny based on internal transcribed spacer 2 (ITS2) and mitochondrial cytochrome c oxidase subunit 1 (CO1) were performed. The results showed similar morphologies of adult C. formosanus from day 5 after infection in chicks. C. formosanus originated from 4 species of freshwater fish had the same number of circumoral spines on the oral sucker, except for those from C. auratus which revealed 34 circumoral spines. The phylogenetic tree obtained from SRAP profile and the combination of ITS2 and CO1 sequence showed similar results that were correlated with the number of circumoral spines in adult worms. Genetic variability of C. formosanus also occurred in different species of freshwater fish hosts. However, more details of adult worm morphologies and more sensitive genetic markers are needed to confirm the species validity of C. formosanus with 34 circumoral spines originating from C. auratus in the future.

COI DNA Barcoding for Sterkiella multicirrata (Ciliophora: Oxytrichidae) from South Korea

  • Kim, Kang-San;Ji, Su-Jung;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.1
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    • pp.7-9
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    • 2020
  • In the present study, the first mitochondrial cytochrome c oxidase subunit I gene (COI) sequence of Sterkiella multicirrata Li et al., 2018 is presented. To begin with, this species has been also morphologically recorded from South Korea, and this study was performed using genomic DNA of the Korean population. The newly obtained COI sequences of S. multicirrata were identical. And the inter-specific variation between S. multicirrata and S. histriomuscorum was noted at 14.3%. These values correspond well with the results of previous studies. However, because there are very few available COI sequences of stichotrichian in GenBank, it is concluded that continuous accumulation of data is needed for further study.

Phylogenetic relationship of ribosomal ITS2 and mitochondrial COI among diploid and triploid Paragonimus westermani isolates

  • Park, Gab-Man;Im, Kyung-Il;Yong, Tai-Soon
    • Parasites, Hosts and Diseases
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    • v.41 no.1
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    • pp.47-55
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    • 2003
  • We compared patterns of intraspecific polymorphism of two markers with contrasting modes of evolution, nuclear ribosomal DNA (rDNA) and mitochondrial DNA (mtDNA), in the lung fluke, diploid and triploid Paragonimus westermani from three geographical regions of Korea. The genetic distances between three populations of Korean diploid and triploid P. westermani showed no significant difference in the nucleotide sequences of the mitochondrial cytochrome c oxidase subunit 1 (mtCOI) and ribosomaal second internal transcribed spacer (ITS2) genes. A highly resolved strict-consensus tree was obtained that illustrated phylogenetically useful information of the ITS2 and mtCOI sequences from diploid and triploid P. westermani.

Leptoplax doederleini (Polyplacophora: Acanthochitonidae) from South Korea

  • Shin, Youngheon;Park, Jina;Lee, Yucheol;Kim, Taeho;Park, Joong-Ki
    • Animal Systematics, Evolution and Diversity
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    • v.35 no.1
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    • pp.10-14
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    • 2019
  • Acanthochitonidae Pilsbry, 1893 is one of the chiton families characterized by 9 pairs of sutural tufts on a well-expanded girdle that overgrows plates. It is found in intertidal and subtidal zones worldwide. Of its eight genera, only two have been previously reported in South Korea: Acanthochitona Gray, 1821 and Notoplax H. Adams, 1862. Here we report Leptoplax doederleini (Thiele, 1909) as the first record of the genus Leptoplax in South Korea and describe and compare its morphological features with N. kaasi Hong, Dell'Angelo and Van Belle, 1990. In addition, we provide the partial sequence of the mitochondrial DNA cytochrome c oxidase subunit I gene as a DNA barcode sequence record.

New records of three monogonont and seven bdelloid rotifers from Korea

  • Song, Min Ok;Lee, Chang-Ho
    • Journal of Species Research
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    • v.10 no.4
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    • pp.392-404
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    • 2021
  • Rotifers collected from mosses, leaf litter, soil, and wetland at six different locations in Korea were investigated. Ten species belonging to six genera in four families of monogonont and bdelloid rotifers were new to Korea: Habrotrocha scepanotrochoides De Koning, 1947, H. tripus (Murray, 1907), Lecane opias (Harring and Myers, 1926), L. perpusilla (Hauer, 1929), Macrotrachela decora (Bryce, 1912), Otostephanos auriculatus auriculatus(Murray, 1911), O. torquatus amoenus Milne, 1916, Scepanotrocha corniculata Bryce, 1910, S. simplex De Koning, 1947, and Testudinella brevicaudata Yamamoto, 1951. Among these 10 Korean new records, Habrotrocha scepanotrochoides, H. tripus, Macrotrachela decora, Otostephanos auriculatus auriculatus, O. torquatus amoenus, Scepanotrocha corniculata, and S. simplex were new to Asia as well. The present study is the first report of the genus Scepanotrocha Bryce, 1910 from Korea. Here, diagnostic characteristics and photomicrographs are provided for each Korean new record. In addition, a partial sequence of mitochondrial cytochrome c oxidase subunit 1 gene (mtCOX1) for S. simplex is presented.

DNA Barcoding of Allobathynella yecheonensis (Bathynellacea: Parabathynellidae) from Interstitial Groundwater, South Korea

  • Ji, Su-Jung;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.38 no.4
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    • pp.283-286
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    • 2022
  • Bathynellacea is a stygobitic group that is commonly associated with subterranean habitats. Allobathynella Morimoto and Miura, 1957, which is a genus of parabathynellid Bathynellacea, has the widest range of distribution and is rich in species from the Korean peninsula among Korean Bathynellacea genera. The material of Allobathynella yecheonensis Park and Cho, 2016, was found in the type locality of interstitial groundwater in the Nakdonggang River in South Korea. In this study, we determined the sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) and nuclear 18S ribosomal DNA of A. yecheonensis and compared them with those of A. hongcheonensis, A. wonjuensis, and A. danyangensis. In addition, we provided photographs of A. yecheonensis and diagnosis including a note on morphological observations.

New record of the unstalked crinoid Tropiometra macrodiscus (Crinoidea: Comatulida: Tropiometridae) from Korea

  • Kim, Philjae;Lee, Taekjun;Shin, Sook
    • Journal of Species Research
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    • v.11 no.1
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    • pp.22-28
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    • 2022
  • Two crinoid specimens of genus Tropiometra were collected from Busan and Tongyeong by SCUBA diving on August 2010 and October 2011, respectively. The specimens were identified as Tropiometra macrodiscus (Hara, 1895), which belongs to the family Tropiometridae of superfamily Tropiometroidea. The genus Tropiometra AH Clark, 1907 comprises four species worldwide at present, and it has not been reported in Korea. Tropiometra macrodiscus was first described by Hara (1895) in Japan. It is difficult to distinguish T. macrodiscus from T. afra (Hartlaub, 1890), there has been confusion with examination of their phylogenetic positions in crinoid morphological classification. Despite this, T. macrodiscus can be distinguished from T. afra based on longer arms, stouter whole-body parts, magnificently larger numbers of cirrus, and numerous segments. The morphological characteristics of T. macrodiscus collected in Korea have been described, and DNA barcode region representing cytochrome c oxidase subunit I was obtained for its molecular phylogenetic analysis.

Four bdelloid rotifers new to Korea

  • Min Ok Song;Chang-Ho Lee
    • Journal of Species Research
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    • v.12 no.2
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    • pp.115-121
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    • 2023
  • We conducted a taxonomic study of bdelloid rotifers found from terrestrial habitats such as mosses, leaf litter and soil at four different locations in Korea. The study resulted in four new Korean records belonging to two genera in two families, Habrotrochidae and Philodinidae, of bdelloid rotifers: Habrotrocha soror Donner, 1950; H. thienemanni rubella Donner, 1951; H. valida Milne, 1916 and Philodina nitida nitida Milne, 1916. These new Korean records are rare and have very limited distributions. Habrotrocha thienemanni rubella and H. valida were not found again after their original descriptions until the present study. The present study is the third record for both H. soror and P. nitida nitida. All these four new Korean records are new to Asian fauna as well. Here, diagnostic characteristics and photomicrographs are provided for each new Korean record. In addition, a partial sequence of mitochondrial cytochrome c oxidase subunit 1 gene (mtCOX1) for P. nitida nitida is presented.