• 제목/요약/키워드: Cytochrome C oxidase

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한국산 1미기록종, Acanthaphritis unoorum (농어목, 꼬리점눈퉁이과)의 어란 및 자치어의 분자동정 및 형태기재 (Molecular Identification and Morphological Descriptions of the Eggs, Larvae and Juvenile of the Previously Unrecorded Species Acanthaphritis unoorum (Perciformes, Percophidae) in Korean Waters)

  • 허성현;반태우;김진구;지환성;문성용
    • 한국수산과학회지
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    • 제52권1호
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    • pp.67-73
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    • 2019
  • We presented detailed morphological descriptions of the eggs, larvae and juvenile of Acanthaphritis unoorum based on specimens collected with bongo nets from Korean waters during the period May 2017-July 2018. We collected 18 individuals including eggs (n= 4, 0.77-0.85 mm in egg diameter), preflexion larvae (n= 6, 4.11-6.31 mm in standard length, SL), flexion larvae (n= 4, 6.60-7.82 mm SL), postflexion larvae (n= 3, 8.94-13.46 mm SL), and one juvenile (n= 1, 14.67 mm SL). The mitochondrial (mt) DNA 16S rRNA sequences of the eggs, and the cytochrome c oxidase subunit I (COI) sequences of the larvae were identical to those of A. unoorum adults (genetic distances <0.01). The A. unoorum larvae and the juvenile that we collected were morphologically similar to those of Dactylopsaron dimorphicum, but the A. unoorum specimens were readily distinguishable by the presence of lateral melanophores. This is the first record of A. unoorum in Korean waters. We propose a new Korean name for A. unoorum: "O-ri-bu-ri-nuntung-i".

Morphological and Molecular Diagnosis of Necator americanus and Ancylostoma ceylanicum Recovered from Villagers in Northern Cambodia

  • Chang, Taehee;Jung, Bong-Kwang;Sohn, Woon-Mok;Hong, Sooji;Shin, Hyejoo;Ryoo, Seungwan;Lee, Jeonggyu;Lee, Keon Hoon;Khieu, Virak;Huy, Rekol;Chai, Jong-Yil
    • Parasites, Hosts and Diseases
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    • 제58권6호
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    • pp.619-625
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    • 2020
  • Human hookworm infections caused by adult Ancylostoma spp. and Necator americanus are one of the most important tropical diseases. We performed a survey of intestinal helminths using the Kato-Katz fecal examination technique targeting 1,156 villagers residing in 2 northern provinces (Preah Vihear and Stung Treng) of Cambodia in 2018. The results revealed a high overall egg positive rate of intestinal helminths (61.9%), and the egg positive rate of hookworms was 11.6%. Nine of the hookworm egg positive cases in Preah Vihear Province were treated with 5-10 mg/kg pyrantel pamoate followed by purging with magnesium salts, and a total of 65 adult hookworms were expelled in diarrheic stools. The adult hookworms were analyzed morphologically and molecularly to confirm the species. The morphologies of the buccal cavity and dorsal rays on the costa were observed with a light microscope, and the nucleotide sequences of mitochondrial cytochrome c oxidase subunit 1 (cox1) gene were analyzed. The majority of the hookworm adults (90.7%) were N. americanus, whereas the remaining 9.3% were Ancylostoma ceylanicum, a rare hookworm species infecting humans. The results revealed a high prevalence of hookworm infections among people in a northern part of Cambodia, suggesting the necessity of a sustained survey combined with control measures against hookworm infections.

Genetic Diversity of Hard Ticks (Acari: Ixodidae) in the South and East Regions of Kazakhstan and Northwestern China

  • Yang, Yicheng;Tong, Jin;Ruan, Hongyin;Yang, Meihua;Sang, Chunli;Liu, Gang;Hazihan, Wurelihazi;Xu, Bin;Hornok, Sandor;Rizabek, Kadyken;Gulzhan, Kulmanova;Liu, Zhiqiang;Wang, Yuanzhi
    • Parasites, Hosts and Diseases
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    • 제59권1호
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    • pp.103-108
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    • 2021
  • To date, there is no report on the genetic diversity of ticks in these regions. A total of 370 representative ticks from the south and east regions of Kazakhstan (SERK) and Xinjiang Uygur Autonomous Region (XUAR) were selected for molecular comparison. A fragment of the mitochondrial cytochrome c oxidase subunit I (cox1) gene, ranging from 631 bp to 889 bp, was used to analyze genetic diversity among these ticks. Phylogenetic analyses indicated 7 tick species including Hyalomma asiaticum, Hyalomma detritum, Hyalomma anatolicum, Dermacentor marginatus, Rhipicephalus sanguineus, Rhipicephalus turanicus and Haemaphysalis erinacei from the SERK clustered together with conspecific ticks from the XUAR. The network diagram of haplotypes showed that i) Hy. asiaticum from Almaty and Kyzylorda Oblasts together with that from Yuli County of XUAR constituted haplogroup H-2, and the lineage from Chimkent City of South Kazakhstan was newly evolved; and ii) the R. turanicus ticks sampled in Israel, Almaty, South Kazakhstan, Usu City, Ulugqat and Baicheng Counties of XUAR were derivated from an old lineage in Alataw City of XUAR. These findings indicate that: i) Hy. asiaticum, R. turanicus and Ha. erinacei shared genetic similarities between the SERK and XUAR; and ii) Hy. marginatum and D. reticulatus show differences in their evolution.

Discovery of novel haplotypes from wild populations of Kappaphycus (Gigartinales, Rhodophyta) in the Philippines

  • Roleda, Michael Y.;Aguinaldo, Zae-Zae A.;Crisostomo, Bea A.;Hinaloc, Lourie Ann R.;Projimo, Vicenta Z.;Dumilag, Richard V.;Lluisma, Arturo O.
    • ALGAE
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    • 제36권1호
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    • pp.1-12
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    • 2021
  • As the global demand for the carrageenophyte Kappaphycus is steadily increasing, its overall productivity, carrageenan quality, and disease resistance are gradually declining. In the face of this dilemma, wild Kappaphycus populations are viewed as sources of new cultivars that could potentially enhance production; therefore, assessment of their diversity is crucial. This study highlights the morphological and genetic diversity of wild Kappaphycus species obtained from two sites in the Philippines. Nucleotide alignments of available 5' region of the mitochondrial cytochrome c oxidase subunit I (COI-5P) and cox2-3 spacer sequences of Kappaphycus confirmed the presence of K. alvarezii in Guiuan, Eastern Samar and K. striatus in Bolinao, Pangasinan. Based on the concatenated sequences of the COI-5P and the cox2-3 spacer, nine novel haplotypes were observed along with other published haplotypes. However, there was no relationship between haplotype and morphology. These newly recognized haplotypes indicate a reservoir of unutilized wild genotypes in the Philippines, which could be taken advantage of in developing new cultivars with superior traits. DNA barcodes generated from this study effectively expand the existing databank of Kappaphycus sequences and can provide insights in elucidating the genetic diversity of Kappaphycus species in the country.

국내에서 유통되는 미꾸리과(Cobitidae) 어종의 분자동정 모니터링 (Genetic Identification Monitoring of Cobitidae Distribution in Korea)

  • 김현석;신지영;양준호;차은지;양지영
    • 한국수산과학회지
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    • 제55권5호
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    • pp.742-750
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    • 2022
  • This study aimed to monitor the distribution of Cobitidae in Korea by the identification of species using genetic analysis. Based on the genetic analysis, Cobitidae species in four of five domestic fish farms consisted of only Chinese muddy loach Misgurnus mizolepis, but muddy loach Misgurnus anguillicaudatus was also present it in one fish farm. In the case of imported Cobitidae species, in addition to Chinese muddy loach and muddy loach, the harmful species Paramisgurnus dabryanus, was also present. Chinese muddy loach accounted for 20%, 67%, and 60% of the S6, S7, and S8 samples, respectively. An analysis of the total length, body length, and weight showed that domestic Chinese muddy loach showed higher values than imported muddy loach, and imported Chinese muddy loach showed similar values to P. dabryanus. There were no significant differences in the country of origin of the three species. Thus, the mitochondrial cytochrome c oxidase subunit I gene sequence was analyzed and compared the verification of species identification. The three species of Cobitidae were genetically divided into three groups and determined to have genetic differences. These results indicate that it is necessary to reduce the heterogeneous mixing rate through discriminating species by genetic analysis.

한국의 희귀 나비가오리[Gymnura japonica (나비가오리과, 연골어강)]의 분류학적 재검토 (Taxonomic Review of a Rare Butterfly Ray Gymnura japonica (Gymnuridae, Chondrichthyes), in Korea)

  • 김진구;유정화;장서하;한경호;김병엽
    • 한국수산과학회지
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    • 제55권1호
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    • pp.30-36
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    • 2022
  • We collected a total of four butterfly ray specimens (Gymnura japonica, 213.4-695.0 mm in total length) in Korea from 2016 to 2021 and investigated their morphological and molecular characteristics in order to clarify their taxonomic status. These features are summarized as follows. Disc lozenge-shaped, 1.8-2.0 times broader than long. Tail very short, post-cloaca length 23.9-28.2% in disc width. Snout short, no rostral cartilage. Clasper short, no hook. Dorsal surface uniform yellow or brownish grey, with or without rounded light yellow spots. An analysis of 434 base-pair sequences of mitochondrial DNA cytochrome c oxidase subunit I showed that all four specimens corresponded to G. japonica from Japan (Kimura-2-parameter distance = 0-0.2%), suggesting that the color patterns found may be due to intraspecific color variation. G. japonica resembles Gymnura poecilura but differs in that it has a shorter tail length to disc width (23.9-28.2% in G. japonica vs. 40.1-48.3% in G. poecilura). This study revealed that G. japonica occurred in areas affected by the Tsushima Warm Current, tentatively suggesting that G. japonica may be an indicator species for monitoring marine ecosystem changes due to climate change.

COI 바코딩으로 동정한 남방표문쥐치(Naso hexacanthus) 치어의 첫 형태 기재 (First Morphological Description of a Larval Sleek Unicornfish Naso hexacanthus(Acanthuridae, Perciformes) Identified by COI Barcoding in the East China Sea)

  • 최해영;최희찬;김성;오현주;윤석현
    • 한국어류학회지
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    • 제34권2호
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    • pp.119-126
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    • 2022
  • 본 연구는 동중국해에서 수집한 치어(체장 5.2 mm)의 종을 COI 바코딩을 통해 남방표문쥐치(Naso hexacanthus)로 동정하고, 형태를 처음으로 보고한다. 치어는 마름모꼴의 몸통으로 등지느러미와 뒷지느러미의 첫 극조는 길고 톱니가 나 있었다. 뒷지느러미 기저부에 네 개의 흑색소포, 미병부에 밀집한 흑색소포, 뇌 표면에 퍼져 있는 흑색소포가 있었다. 작은 가시 한 개가 각각 콧등과 눈 뒤에 있었고, 톱니 모양의 돌기가 머리, 눈 위, 전새개골 내부와 외부, 새개골 아래와 옆 부분에 발달하였다. COI 바코딩으로 동정한 남방표문쥐치 치어의 형태적 특징은 치어의 종 동정에 유용할 것이다.

Analysis of genetic differentiation and population structure of the Korean-peninsula-endemic genus, Semisulcospira, using mitochondrial markers

  • Eun-Mi Kim;Yeon Jung Park;Hye Min Lee;Eun Soo Noh;Jung-Ha Kang;Bo-Hye Nam;Young-Ok Kim;Tae-Jin Choi
    • Fisheries and Aquatic Sciences
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    • 제25권12호
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    • pp.601-618
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    • 2022
  • The genus Semisulcospira is an economically and ecologically valuable freshwater resource. Among the species, Semisulcospira coreana, Semisulcospira forticosta and Semisulcospira tegulata are endemic to the Korean peninsula and Semisulcospira gottschei is widespread in Asia. Therefore, maintenance and conservation of wild populations of these snails are important. We investigated the genetic diversity and population structure of Semisulcospira based on the mitochondrial cytochrome c oxidase subunit I (COI), NADH dehydrogenase subunit 4 (ND4), and combined mitochondrial DNA (COI + ND4) sequences. All four species and various genetic makers showed a high level of haplotype diversity and a low level of nucleotide diversity. In addition, Fu's Fs and Tajima's D neutrality tests were performed to assess the variation in size among populations. Neutrality tests of the four species yielded negative Fu's Fs and Tajima's D values, except for populations with one haplotype. The minimum spanning network indicated a common haplotype for populations of S. coreana, S. tegulata and S. gottschei, whereas S. forticosta had a rare haplotype. Also, genetic differences and gene flows between populations were assessed by analysis of molecular variance and using the pairwise fixation index. Our findings provided insight into the degree of preservation of the species' genetic diversity and could be utilized to enhance the management of endemic species.

Unveiling mesophotic diversity in Hawai'i: two new species in the genera Halopeltis and Leptofauchea (Rhodymeniales, Rhodophyta)

  • Erika A., Alvarado;Feresa P., Cabrera;Monica O., Paiano;James T., Fumo;Heather L., Spalding;Celia M., Smith;Jason C., Leonard;Keolohilani H., Lopes Jr.;Randall K., Kosaki;Alison R., Sherwood
    • ALGAE
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    • 제37권4호
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    • pp.249-264
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    • 2022
  • Two genera of the Rhodymeniales, Halopeltis and Leptofauchea, are here reported for the first time from the Hawaiian Islands and represent the deepest records for both genera. Molecular phylogenetic analyses of cytochrome oxidase subunit I (COI), rbcL, and large subunit ribosomal DNA (LSU) sequences for Hawaiian specimens of Leptofauchea revealed one well-supported clade of Hawaiian specimens and three additional lineages. One of these clades is described here as Leptofauchea huawelau sp. nov., and is thus far known only from mesophotic depths at Penguin Bank in the Main Hawaiian Islands. L. huawelau sp. nov. is up to 21 cm, and is the largest known species. An additional lineage identified in the LSU and rbcL analyses corresponds to the recently described L. lucida from Western Australia, and is a new record for Hawai'i. Hawaiian Halopeltis formed a well-supported clade along with H. adnata from Korea, the recently described H. tanakae from mesophotic depths in Japan, and H. willisii from North Carolina, and is here described as Halopeltis nuahilihilia sp. nov. H. nuahilihilia sp. nov. has a distinctive morphology of narrow vegetative axes that harbor constrictions along their length. The current distribution of H. nuahilihilia includes mesophotic depths around W. Maui, W. Moloka'i, and the island of Hawai'i in the Main Hawaiian Islands. Few reproductive characters were observed because of the small number of specimens available; however, both species are distinct based on phylogeny and morphology. These descriptions further emphasize the Hawaiian mesophotic zone as a location harboring many undescribed species of marine macroalgae.

제주도 남부해역에서 채집한 놀래기과(Labridae) 후기자어 Thalassoma quinquevittatum 한국 첫기록 (First Record of the Fivestripe Wrasse, Thalassoma quinquevittatum (Perciformes: Labridae) Based on Postlarval Specimen from the Southern Coastal Waters of Jeju-do Island, Korea)

  • 배재경;지환성;김진구
    • 한국어류학회지
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    • 제34권4호
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    • pp.225-230
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    • 2022
  • 2020년 11월 한국 제주도 남부에서 봉고네트로 채집된 놀래기과 고생놀래기속 후기자어 1개체를 형태 분석한 결과, Thalassoma quinquevittatum로 확인되었다. 자치어 시기에 형태적으로 매우 유사한 색동놀래기 T. amblycephalum와 등쪽 경사, 눈의 모양, 흑색소포의 분포에서 구별된다. 미토콘드리아 DNA COI 염기서열 548 bp을 분석한 결과, T. quinquevittatum 성어와 0.2~0.5% 유전적 차이를 보였고, 같은 속의 T. amblycephalum, T. cupido, T. lunare, T. purpureum, T. lucasanum, T. lutescens와는 각각 12.3%, 13.7%, 13.2%, 12.1%, 13%, 11.2%의 유전적 차이를 보였다. 국내 처음 보고되는 본 종의 새로운 국명으로 "다섯줄색동놀래기"를 제안한다.