• Title/Summary/Keyword: Cytochrome C oxidase

Search Result 386, Processing Time 0.02 seconds

A New Species of Cerapus from Korea (Crustacea: Amphipoda: Ischyroceridae)

  • Lim, Byung-Jin;Park, Ja-Yang;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
    • /
    • v.24 no.1
    • /
    • pp.9-16
    • /
    • 2008
  • Cerapus longicervicum, a new species of ischyrocerid amphipods, was isolated from the vicinal sea of Deokjeokdo-Island, Incheon (South Korea). This species is characterized by a narrower coxal plate width of gnathopod 1 in male, which is 0.39 times as broad as pereonite 1, and antenna 2, which is longer than antenna 1. This paper also provides the partial sequence of the mitochondrial cytochrome c oxidase subunit 1 (CO1) of the new species, which was obtained from a specimen that was preserved in 4% formalin solution.

A Newly Recorded Sea Star of the Genus Luidia (Asteroidea, Paxillosida, Luidiidae) from Jeju Island, Korea, Based on Morphological and Molecular Analysis

  • Lee, Taekjun;Shin, Sook
    • Animal Systematics, Evolution and Diversity
    • /
    • v.34 no.4
    • /
    • pp.208-214
    • /
    • 2018
  • The genus Luidia belongs to the family Luidiidae in the order Paxillosida. It is a common littoral taxon, and the depth range of the Korean fauna is generally 0-100 m. However, specimens of Luidia were collected from Jeju Island in Korea at 150-160 m depth and identified as Luidia sagamina sagamina $D{\ddot{o}}derlein$, 1920. This species is determined by morphological characteristics and mitochondrial cytochrome c oxidase subunit I sequence analysis. Luidia sagamina sagamina is a very rare sea star in worldwide and it only collected previously from Sagami Bay, Japan, and is newly reported in Korea. Four species of Luidia, including L. s. sagamina, are recorded in the Korean fauna.

DNA Barcoding of Boccardiella hamata (Annelida: Polychaeta: Spionidae) in South Korea

  • Lee, Geon Hyeok;Yoon, Seong Myeong;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
    • /
    • v.36 no.3
    • /
    • pp.268-273
    • /
    • 2020
  • A spionid polychaete, Boccardiella hamata (Webster, 1879) has been found from mud in crevices between the shells of oysters and adherent substrates in South Korea. The sequences of mitochondrial DNA (mtDNA) cytochrome c oxidase subunit 1 (CO1), 16S ribosomal DNA (16S), and the nuclear 18S ribosomal DNA (18S) from Korean individuals of Boccardiella hamata were determined in the present study. The molecular analysis based on the 18S rRNA gene sequences showed clear separation among the spionid polychaete species, and the sequences of Korean and Japanese individuals are completely identical. The morphological diagnosis and photographs of B. hamata are also provided.

First Record of the Monotypic Species, Nonparahalosydna pleiolepis (Polychaeta: Polynoidae) from Korean Waters, with Its DNA Barcoding Information

  • Kim, Kwang-Soo;Choi, Hyun Ki;Lee, Wonchoel;Park, Taeseo
    • Animal Systematics, Evolution and Diversity
    • /
    • v.36 no.3
    • /
    • pp.258-263
    • /
    • 2020
  • The aim of this study is to report monotypic species, Nonparahalosydna pleiolepis(Marenzeller, 1879) for the first time from Korean waters with its DNA barcoding data. We collected individuals of the species from the subtidal zone of southern coast of Korea through scuba diving. To estimate DNA barcoding gap, the pairwise genetic distances were calculated between N. pleiolepis and its congeners (Halosydna brevisetosa Kinberg, 1856 and Lepidonotus squamatus (Linnaeus, 1758)) based on the cytochrome c oxidase subunit I gene (COI). Inter-specific genetic distances ranged from 18.7% to 24.6%, while intra-specific genetic distance within N. pleiolepis ranged from 0.3% to 0.5%. The maximum intra-specific genetic distance among the three species was 1.4%. The morphological diagnosis of N. pleiolepis with a taxonomic note on the species were also provided.

New Record of Kellicottia bostoniensis and Redescription of Two Freshwater Rotifers from Korea (Rotifera: Monogononta)

  • Yang, Hee-Min;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
    • /
    • v.36 no.3
    • /
    • pp.222-227
    • /
    • 2020
  • In this study, we identified three monogonont rotifers from South Korea: Kellicottia bostoniensis (Rousselet, 1908), Trichocerca tenuior (Gosse, 1886), and Lepadella triptera (Ehrenberg, 1830). The distribution records of K. bostoniensis were mainly located in the Nearctic, Neotropic and Western Palearctic regions. After Japan, this is the second record of it in Asia. Trichocerca tenuior and Lepadella triptera have already been recorded in Korea, but the data of two species were insufficient in previous study. Here, we describe the morphological characteristics of the three species and the trophi structures of K. bostoniensis and T. tenuior. This study is the first to characterize the trophi structure of K. bostoniensis, observed using a scanning electron microscope. In addition, we have determined the partial cytochrome c oxidase subunit 1 (COI) and 18S rRNA gene sequences of T. tenuior and L. triptera for their DNA barcodes.

DNA Barcoding of Six Diogenid Species (Crustacea: Decapoda: Paguroidea) in Korea

  • Jung, Jibom;Kim, Won
    • Animal Systematics, Evolution and Diversity
    • /
    • v.35 no.4
    • /
    • pp.182-185
    • /
    • 2019
  • In this study, cytochrome c oxidase subunit I(COI) sequences of 17 individuals from six Korean diogenid species(i.e., 2 Areopaguristes japonicus, 4 A. nigroapiculus, 3 Paguristes digitalis, 4 P. ortmanni, 3 Diogenes edwardsii, and 1 Ciliopagurus kempfi) were determined and analyzed. The DNA barcoding results of this study were consistent with the morphological identification of these six species. Interspecific variations of COI sequences within six Korean diogenid species exceeded the minimum interspecific variation of diogenid hermit crabs in previous studies. Little intraspecific variation exists except for P. digitalis. This study should facilitate further molecular taxonomy of East Asian diogenids.

A Newly Recorded Sea Star of the Genus Luidia (Asteroidea: Paxillosida: Luidiidae) from the Korea Strait, Korea

  • Kim, Donghwan;Kim, Minkyung;Shin, Sook
    • Animal Systematics, Evolution and Diversity
    • /
    • v.33 no.2
    • /
    • pp.131-135
    • /
    • 2017
  • Asteroid specimens of the genus Luidia were collected at a depth of 95-100 m in the Korea Strait by bottom trawling in April 2016. The specimens were identified as Luidia avicularia Fisher, 1913 (Luidiidae: Paxillosida) based on morphological characteristics and molecular phylogenetic analyses, and the species is new to the Korean fauna. A 648-bp partial nucleotide sequence of mitochondrial cytochrome c oxidase I (mt-COI) gene was obtained from Korea, and then was compared to sequences of related species stored in GenBank using molecular phylogenetic analyses. No sequence differences were detected between the L. avicularia mt-COI gene sequences from Korea and China, and the species described in this report was clearly distinct from L. maculata, which was previously reported in Korean fauna. Three Luidia species have been reported in Korea.

DNA Barcoding of Scolelepis (Parascolelepis) papillosa (Annelida, Spionidae) in Korea, with Additional Taxonomic Notes

  • Lee, Geon Hyeok;Lee, Ha-Eun;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
    • /
    • v.37 no.4
    • /
    • pp.349-353
    • /
    • 2021
  • Scolelepis (Parascolelepis) papillosa (Okuda, 1937), originally described from a single incomplete individual from Jeju Island in Korea, was collected from the intertidal sandflats of Soan Island (Jeollanam-do province) in Korea. The examined specimens of S. (P.) papillosa agree well with the original description in having the papillae on the basal sheath of the palps, presence of occipital antenna, absence of notochaetae in chaetiger 1, branchiae completely fused with notopodial postchaetal lamellae at the anterior chaetigers, and neuropodial hooded hooks appearing from chaetiger 16. In this study, the sequences of partial mitochondrial cytochrome c oxidase subunit I (COI), 16S ribosomal DNA (16S rDNA), and the nuclear 18S ribosomal DNA (18S rDNA) of the species were determined. We also provide the detailed description and illustrations on this species based on the complete specimens newly collected in this study.

DNA Barcoding of Eurydice longiantennata (Isopoda, Cymothooidea, Cirolanidae) from South Korea

  • Kim, Sung Hoon;Choi, Hyun Ki;Kim, Jong Guk
    • Animal Systematics, Evolution and Diversity
    • /
    • v.37 no.4
    • /
    • pp.354-357
    • /
    • 2021
  • In Korean waters, the cirolanid isopod, Eurydice longiantennata Nunomura and Ikehara, 1985 has been reported only from the subtidal zone of Jeju island. We obtained the mitochondrial cytochrome c oxidase subunit I (COI) sequences of this species and determined the DNA barcoding data of E. longiantennata based on a genetic comparison of E. longiantennata and its congeners. The intra-specific genetic distance between the three COI sequences of E. longiantennata ranged from 0 to 0.6%. The inter-specific distances between E. longiantennata and other cirolanid isopods ranged from 24 to 33.2%. In this study, we provided the DNA information of E. longiantennata with a morphological diagnosis and images of the species.

First Reliable Record of the Keeltail Pomfret Taractes rubescens (Bramidae: Perciformes) from Korea (한국산 새다래과(Bramidae) 어류 1미기록종, Taractes rubescens (Jordan and Evermann, 1887))

  • Lee, Jae-Hwan;Lee, Woo-Jun;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
    • /
    • v.52 no.3
    • /
    • pp.283-287
    • /
    • 2019
  • Two specimens of Taractes rubescens (family Bramidea) were collected from Busan and Pohang, Korea, between 2015 and 2016. Taractes rubescens was very similar to Taractes asper, but the two species are clearly distinguishable by the number of anal fin rays (21-23 in T. rubescens vs. 25-27 in T. asper) and the presence of a lateral caudal keel (present in T. rubescens vs. absent in T. asper). The mitochondrial DNA cytochrome c oxidase subunit I sequences of the specimens described in this paper perfectly matched those of T. rubescens, but differed from those of T. asper (genetic distance: 6.9%). We use the Korean common name proposed by Kim and Ryu (2017) for T. rubescens, "Geom-eun-sae-da-rae".