• Title/Summary/Keyword: Cytochrome C oxidase

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New Record of Nomeus gronovii (Pisces: Nomeidae) from Korea

  • Lee, Soo Jeong;Kim, Jin-Koo;Lee, Won-Chan;Kim, Jeong Bae;Kim, Hyung Chul
    • Fisheries and Aquatic Sciences
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    • v.18 no.3
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    • pp.317-320
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    • 2015
  • A new record of Nomeus gronovii is described here based on a single specimen collected off the Jeju Island, Korea. The species has a blotched and spotted pattern on the body, 41 vertebrae, and a large pectoral fin with a white lower part. A molecular analysis of the partial (500 bp) cytochrome c oxidase subunit I gene showed that this specimen is closely related to specimens of N. gronovii collected in South Africa (Kimura-two-parameter distance = 0.006-0.012). A new Korean name, "Ga-neun-dong-gang-yeon-chi", is proposed for this species.

Analysis of Mitochondrial DNA Mutation in hepatoma

  • Chung, Ku-Sun;Lee, Kyo-Young;Shim, Sang-In;Kim, Jin-Sun;Song, Eun-Sook
    • BMB Reports
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    • v.33 no.5
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    • pp.417-421
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    • 2000
  • Mitochondrial DNA (mtDNA) mutation was investigated in a hepatoma patient using a polymerase chain reaction (PCR) and an in situ hybridization technique. Biotin-labeled probes for the subunit m of cytochrome c oxidase revealed differences in the in situ hybridization. A PCR assay using biopsied and microdissected tissues showed that common deletion (4,977 bp) was more pronounced in the cancer region than in the normal parts of the same patient. These results suggest that mtDNA deletion might be associated with tumorigenesis in hepatoma.

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A Report on Five New Records of Nudibranch Molluscs from Korea

  • Jung, Daewui;Lee, Jongrak;Kim, Chang-Bae
    • Animal Systematics, Evolution and Diversity
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    • v.30 no.2
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    • pp.124-131
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    • 2014
  • The Korean nudibranch faunal study has been conducted since 2011 and five species including Dermatobranchus otome Baba, 1992, Mexichromis festiva (Angas, 1864), Noumea nivalis Baba, 1937, Hoplodoris armata (Baba, 1993), and Okenia hiroi (Baba, 1938) were newly reported with re-descriptions and figures. Also, Noumea purpurea Baba, 1949 was re-described with illustrations because previous records for this species were given without a description. Two congeneric species in the genus Noumea could be distinguished by ground color, dorsal markings, color of the mantle edge and gills, and mantle and dorsal marking. In addition, mitochondrial cytochrome c oxidase subunit I (COI) sequences of five species were provided for further molecular identification study. Consequently, a total of 43 species have been reported for the Korean nudibranch fauna.

COI DNA Barcoding for Sterkiella multicirrata (Ciliophora: Oxytrichidae) from South Korea

  • Kim, Kang-San;Ji, Su-Jung;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.1
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    • pp.7-9
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    • 2020
  • In the present study, the first mitochondrial cytochrome c oxidase subunit I gene (COI) sequence of Sterkiella multicirrata Li et al., 2018 is presented. To begin with, this species has been also morphologically recorded from South Korea, and this study was performed using genomic DNA of the Korean population. The newly obtained COI sequences of S. multicirrata were identical. And the inter-specific variation between S. multicirrata and S. histriomuscorum was noted at 14.3%. These values correspond well with the results of previous studies. However, because there are very few available COI sequences of stichotrichian in GenBank, it is concluded that continuous accumulation of data is needed for further study.

Reassessment of the Taxonomic Status of Four Pagurus Species (Crustacea: Decapoda: Paguridae) in Korea Using DNA Barcoding

  • Jung, Jibom;Kim, Won
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.1
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    • pp.10-14
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    • 2020
  • Pagurus is the most diverse hermit crab genus in Korea. In this study, the cytochrome c oxidase subunit I (COI) and 16S rRNA of 24 individuals from four Korean Pagurus species (i.e., 7 Pagurus brachiomastus, 8 P. proximus, 8 P. simulans, and 1 P. rectidactylus) were sequenced and analyzed. No genetic difference was found between the COI and 16S rRNA sequences of P. brachiomastus and P. simulans, and the COI sequences of P. rectidactylus and P. quinquelineatus (comparative species from NCBI). Considering the morphological and ecological characteristics together, we assume that P. simulans and P. rectidactylus are subspecies of P. brachiomastus and P. quinquelineatus, respectively. This study should facilitate further research on the taxonomic status of these species.

Molecular Identification and Morphological Comparison of Juveniles of Two Collichthys Species (Pisces: Sciaenidae) from the Yellow Sea (황해 강달이속(Collichthys) 치어 2종의 분자동정 및 형태비교)

  • Lee, Soo Jeong;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.1
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    • pp.79-83
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    • 2014
  • Thirty five juveniles belonging to the genus Collichthys were collected using a bag net at Gang-wha-do, in the eastern Yellow Sea, between July and September, 2012, and identified using combined genetic and morphological methods. We sequenced 316 base pairs of mitochondrial DNA cytochrome c oxidase subunit I of 35 individuals, of which 22 individuals were identified as Collichthys niveatus (12.9-47.6 mm in SL) and 13 as Collichthys lucidus (13.4-40.3 mm SL). Morphologically, the number of occipital crests, an important taxonomic character during the adult stage, could not distinguish the two species during the juvenile stage, but the shape of the first anal fin spine clearly distinguished the two species even among juveniles.

New record of two cymothoid isopods (Crustacea: Malacostraca: Isopoda) from South Korea

  • Song, Ji-Hun;Min, Gi-Sik
    • Journal of Species Research
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    • v.5 no.3
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    • pp.313-317
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    • 2016
  • Two marine isopods, Elaphognathia sugashimaensis (Nunomura, 1981) and Metacirolana shijikiensis Nunomura, 2008, have been reported for the first time in South Korea. Specimens of E. sugashimaensis and M. shijikiensis were collected using light traps from Yeongdeok-gun and Gageo-do Island in South Korea, respectively. The genera Elaphognathia Monod, 1926 and Metacirolana Kussakin, 1979 are new to South Korea. In this paper, we provide descriptions of diagnostic characteristics and illustrations of their morphologies. Additionally, the partial sequences of mitochondrial cytochrome c oxidase subunit 1 (CO1) of two species are provided as molecular characteristics.

New record of two feather mites (Acari: Sarcoptiformes: Astigmata) from Korea

  • Han, Yeong-Deok;Song, Ji-Hun;Min, Gi-Sik
    • Journal of Species Research
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    • v.5 no.3
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    • pp.324-332
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    • 2016
  • Two feather mites, Zachvatkinia larica Mironov, 1989 and Ardeacarus ardeae (Canestrini, 1878) are reported for the first time in Korea. Specimens of Z. larica and A. ardeae were collected from the blacktailed gull Larus crassirostris and little egret Egretta garzetta, respectively. The genera Zachvatkinia Dubinin, 1949 and Ardeacarus Dubinin, 1951 are new to this country. Here, we provided morphological descriptions and illustrations of these two species. Additionally, we provide the partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) as DNA barcode markers.

First report of the branchiobdellidan Holtodrilus truncatus (Annelida: Clitellata) found on the freshwater atyid shrimp Neocaridina sp. from Korea

  • Ahn, Dong-Ha;Min, Gi-Sik
    • Journal of Species Research
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    • v.5 no.3
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    • pp.459-462
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    • 2016
  • The branchiobdellidan species Holtodrilus truncatus (Liang, 1963) is reported for the first time in Korea. The genus Holtodrilus Gelder and Brinkhurst, 1990 is monotypic within the family Xironodrilidae, and the genus and family of this species are also new to the Korean fauna. The branchiobdellidan specimens were collected from the exoskeletons of the freshwater atyid shrimp, Neocaridina sp., sampled from the 'Andeok Valley', Jeju-do Province, South Korea. Holtodrilus truncatus is characterized by its terete body form, 7/7 dental formula (with a large medial tooth and three pairs of smaller lateral teeth), and no trunk appendages. In addition, we determined a partial sequence of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene as a DNA barcode marker for H. truncatus. The present study is the first record of the branchiobdellidan occurrence on a non-crayfish host (shrimp) in Korea. To date, seven species (four genera in three families) of branchiobdellidans have been reported in the Korean fauna.

New record of four Korean feather mites (Acari: Sarcoptiformes: Pterolichidae) isolated from the birds in the family Rallidae

  • Han, Yeong-Deok;Min, Gi-Sik
    • Journal of Species Research
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    • v.6 no.spc
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    • pp.152-163
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    • 2017
  • Four feather mite species, Grallobia fulicae (Trouessart, 1885), Grallobia gallinulae Gaud, 1968, Grallolichus proctogamus (Trouessart, 1885) and Megniniella gallinulae (Buchholz, 1869), previously unrecorded in South Korea are reported. Specimens of Grallobia fulicae and Grallolichus proctogamus were collected from the eurasian coot, Fulica atra in Cheongju-si. Grallobia gallinulae and M. gallinulae were found on the common moorhen, Gallinula chloropus in Yesan-gun. The genera Grallobia Hull, 1934, Grallolichus Gaud, 1960 and Megniniella Gaud, 1958 are new records for South Korea. Here, we provide illustrations and morphological descriptions of these four feather mite species as well as the partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) as DNA barcodes.