• Korean Journal of Crystallography
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• v.7 no.2
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• pp.196-200
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• 1996

The transformation processes from unit cell data, Miller indices and atomic coordinates of non-standard space groups to the ones of the standard space groups in monoclinic system and the calculation processes of their standard deviations have been shown and computerized. The computer programs can be applied to all the seven crystal systems.

• Archives of Pharmacal Research
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• v.26 no.9
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• pp.679-685
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• 2003

A series of novel cyclopropyl nucleosides was synthesized using the highly stereoselective Simmons-Smith reaction starting from 1,2:5,6-di-Ο-isopropylidene-D-mannitol. The structural assignments of these nucleosides were determined by NMR studies and X-ray crystallography. All the synthesized nucleosides were assayed against several viruses.

• Journal of Photoscience
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• v.9 no.2
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• pp.126-129
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• 2002

The chromophore/protein interactions in the photocycle intermediates of photoactive yel- low protein (PYP) were probed by site-directed mutagenesis. The absorption spectra of L- intermediates produced from E46Q, T50V, and R52Q mutants were calculated using the absorption spectra of dark states and difference absorption spectra between L-intermediates and dark states, and compared with that of PYP$\_$L/. The absorption spectrum of R52Q$\_$L/ agreed with that of PYP$\_$L/, but those of E46Q$\_$L/ and T50V$\_$L/ were red-shifted. The effect of these mutations on the absorption spectrum for L-intermediate was comparable to that for the dark state, suggesting that the interaction around the phe-nolic oxygen of the chromophore is conserved in PYP$\_$L/ unlike the crystal structure. On the other hand, we have reported that the absorption spectra of Y 42F$\_$M/, T50V $\_$M/, and R52Q$\_$M/ agreed with that of PYP$\_$M/, but that of E46Q$\_$M/ was red-shifted, suggesting that the hydrogen bond of the chromophore with Glu46 is conserved but that with Tyr42 is broken in PYP$\_$M/. These results suggest that the chromophore inter-acts with Glu46 throughout the photocycle, but never directly interacts with Arg52. This model con- flicts with some of the structural model of PYP intermediates proposed based on the high-resolution X -ray crystallography.

• Korean Journal of Crystallography
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• v.17 no.1
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• pp.6-9
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• 2006

Crystal structure of Bis(N-Methylphenazinium)-Tetracyanopalladate(II) hydrate has been determined by X-ray crystallography. Crystal data: $(C_{13}H_{11}N_2){_2}[Pd(cn)_4]{\cdot}H_2O$, Monocline, Space group $P2_1/b$(No=14), a=9.783(4), b=10.788(4), c=13.666(4) ${\AA},\;{\beta}=104.59(5),\;Z=2,\;V=1392.9{\AA}{^3},\;Dc=1.476gcm^{-3},\;F(000)=632,\;{\mu}=7.05cm^{-1}$. The structure was solved by Patterson method and refined by full matrix least-square methods using unit weights. The final R and S values were R=0.0257, Rw=0.0732, Rall=0.0283 and S=1.07 for 1930 observed reflections. Both cation and anion complexes are essentially planar and have dihedral angles of $10.16(4)^{\circ}$. The planar complex anions are sandwiched between slightly bent cations. The interplanar separations in one triad and between two triads are 3.419(3) and $3.402(4){\AA}$, respectively. The triads are stacked along b-axis.

• Korean Journal of Crystallography
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• v.17 no.1
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• pp.10-13
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• 2006

The crystal structure of Ethylenediammonium chromate, $C_2H_{10}N_2{\cdot}CrO_4$, has been determined by X-ray crystallography. Crystal data: a=6.667(2), b=8.845(2), c:11.827(2) ${\AA}$, Orthorhombic, $P2_12_12_1$(Space Group No=19), Z=4, V=697.4(3) ${\AA}{^3},\;Dc=1.696gcm^{-3},\;{\mu}=1.594mm^{-1}$. The structure was solved by Patterson method and refined by full matrix least-square methods using unit weights. The final R and S values were $R_1=0.0254,\;R_w=0.070,\;R_{all}=0.0255$ and S=1.133 for the observed 1195 reflections. Bond length and angles of two ions are similar to the previously reported data. The ethylenediammonium ion has trans-configuration and are linked through many hydrogen bonds with neighboring anions.

• Korean Journal of Crystallography
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• v.10 no.1
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• pp.33-38
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• 1999

The complex [Ni(L2)(H2O)]Cl·H2O (1) (L2=3,14-dimethyl-2,6,13,17-tetraazartricyclo [14,4,01.18,07.12]docosane-N-acetic acid) has been synthesized and characterized by X-ray crystallography. 1 crystallizes in the triclinic system, space group P, with a=11.274(1), b=13.851(1), c=17.159(6) , α=90.24(2), β=101.10(2), γ=92.11(1)o V=2682.5(11) 3, Z=4, R1=0.042 and wR2=0.111 for 9432 observed reflections with [I>2σ(I)]. The central nicke(II) ion is six-coordinated octahedral geometry with bonds to the four amine nitrogen atoms the carboxylic oxygen atom of the macrocyclic ligand and to the water molecule occupying a position trans to the pendant arm.

• Journal of the Mineralogical Society of Korea
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• v.14 no.1
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• pp.73-84
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• 2001

티타늄과 산소의 함량이 서로 다른 4가지의 합성 페롭스카이트형(perovskite-type) 광물(($K_2$$La_2$$Ti_{n}$/$O_{2n+4}$, n=3, 4, 5, 6; 14/mcm, 14/mmm, I42 m)을 대상으로 리트벨트(Rietveld)구조분석법을 실시하여 결정구조를 밝히고 티타늄함량에 따른 층상형 구조를 연구하였다. 4가지 합성시료에 대하여 구조분석을 실시한결과 대표적인 페롭스카이트형 광물인 토소나이트(taustonite, $La_{1-x}$ //$K_{x}$ /$TiO_3$, x<0.4)가 주성분으로 나타났으며 토스나이트내에 12개의 산소를 배위하는 A자리 양이온은 자리점유율에 의해 $La^{3+}$ 와 $K^{+}$ /의 치환관계를 보여준다 공간군은 14/mcm, 단위포는 a=5.505(1)~5.510(1)$\AA$, c=7.793(1)~7.796(1)$\AA$ V=236.25~236.66 $\AA^3$ 범위의 값을 갖는다. 구조의 정밀도를 나타내는 R지수를 살펴보면 $R_{B}$ 값은 5.31~9.10 S(GofF)값은 0.86~1.24로 각각 계산되었다. 12배위를 하는 A자리 양이온인 란탄과 산소의 평균거리는 2.755$\AA$이고 6배위를 하는 B자리 양이온인 티타늄과 산소의 평균거리는 1.948 $\AA$의 결과를 얻었다. 합성된페롭스카이트형 광물의 층상구조가 알려져 있지 않아 시뮬레이션을 통해 구조모델을 결정하였으며 그결과 n=3인 R-38시료에서만 두 종류의 층상 페롭스카이트($La_2$$K_2$$Ti_3$$O_{10}$ ) 구조 (A-type: 14/mmm, a=3.8178 $\AA$, c=29.9189 $\AA$, V=436.04 $\AA^3$, B-type: 142 m, a =3.8376 $\AA$, c=28.023 $\AA$, V=412.6 $\AA^3$)가 존재함을 확인하였으나 다른 시료에서는 토소나이트, 금홍석 외에 새로운 합성광물로 제파이트의 존재를 확인하였다.

• Applied Microscopy
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• v.47 no.4
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• pp.223-225
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• 2017

Cryo-electron microscopy (cryo-EM) is arguably the most powerful tool used in structural biology. It is an important analytical technique that is used for gaining insight into the functional and molecular mechanisms of biomolecules involved in several physiological processes. Cryo-EM can be separated into the following three groups according to the analytical purposes and the features of the biological samples: cryo-electron tomography (cryo-ET), cryo-single-particle reconstruction, and cryo-electron crystallography. Cryo-tomography is a unique EM technique that is used to study intact biomolecular complexes within their original environments; it can provide mechanistic insights that are challenging for other EM-methods. However, the resolution of reconstructed three-dimensional (3D) models generated by cryo-ET is relatively low, while single-particle reconstruction can reproduce biomolecular structures having near-atomic resolution without the need for crystallization unless the samples are large (>200 kDa) and highly symmetrical. Cryo-electron crystallography is subdivided into the following two categories according to the types of samples: one category that deals with two-dimensional (2D) crystalline arrays and the other category that uses 3D crystals. These two categories of electron-crystallographic techniques use different diffraction data obtained from still diffraction and continuous-rotation diffraction. In this paper, we review crystal-based cryo-EM techniques and focus on the recently developed 3D electron-crystallographic technique called microcrystal-electron diffraction.

• Korean Journal of Crystallography
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• v.4 no.2
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• pp.100-104
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• 1993

Reduced glutathione (GSH) plays a vital role in the metabolism of all cells. Glutathions, a tripeptide cowfosed of glutamic acid, cysteane, and gtycina is synthesized by two synthesized reutions. The first is catalyzed by Y-glutamylcysteine synthetase (GSH-I) and the second by glutathione synthetase (GSH-ll). The glutathione biosynthetic pathway of E. coziis mainly controlled by nonallosteric feedback inhibition of GHS-I by GSH. Determination of the three-dimensional structure of GSH-I by X-ray crystallography is necessary in order to understand the structure-function relationship at the molecular level. As the (irst step toward its structure determination, crystallization of 5. coli V-glutamylcystfine synthetase (GSH-I) has been achived using the hanging drop vapor diffusion method and capillaw method. Crystals of GSH-I have been grown from ammonium sulfate solution. The crystals grew at room temperature within 10 days to dimensions of 0.2 m x 0.2 m x 0.2 ml by hanging drop vapor diffusion method and diffracted to about 4 A resolution using synchrotron X-rays. Another crystal, grown by the capillary method to dimensions of 0.25 mm x 0.25 mm x 0.3 mm within 40 days, diffracted to about 4 A resolution using X-rays from a rotating anode.

• Proceedings of the Botanical Society of Korea Conference
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• 1999.08a
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• pp.83-90
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• 1999

Electron crystallography of two-dimensional crystalsand electron cryo-microscopy is becoming an established method for determining the structure and function of a variety of membrane proteins that are providing difficult to crystallize in three dimension. In this study this technique has been used to investigate the structure of a ~160 kDa reaction centre sub-core complex of photosystem II. Photosystem II is a photosynthetic membrane protein consisting of more than 25 subunits. It uses solar energy to split water releasing molecular oxygen into the atmosphere and creates electrochemical potential across the thylakoid membrane, which is eventually utilized to generate ATP and NADPH. Images were taken using Philips CM200 field emission gun electron microscope with an acceleration voltage of 200kW at liquid nitrogen temperature. In total, 79 images recorded dat tilt angles ranging from 0 to 67 degree yielded amplitudes and phases for a three-dimensional map with an in-plant resolution of 6$\AA$ and 11.4$\AA$ in the third dimension shows at least 23 transmembrane helices resolved in a monomeric complex, of which 18 were able to be assigned to the D1, D2, CP47 , and cytochrome b559 alfa beta-subunits with their associated pigments that ae active in electron transport (Rhee, 1998, Ph.D.thesis). The D1/D2 heterodimer is located in the central position within the complex and its helical scalffold is remarkably similar to that of the reaction centres not only in purple bacteria but also in plant photosystem I (PSI) , indicating a common evoluationary origin of all types of reaction centre in photosynthetic organism known today 9RHee et al. 1998). The structural homology is now extended to the inner antenna subunit, ascribed to CP47 in our map, where the 6 transmembrane helices show a striking structural similarity to the corresponding helices of the PSI reaction centre proteins. The overall arrangement of the chlorophylls in the D1 /D2 heterodimer, and in particular the distance between the central pair, is ocnsistent with the weak exciton coupling of P680 that distinguishes this reaction centre from bacterial counterpart. The map in most progress towards high resolution structure will be presented and discussed.