• Title/Summary/Keyword: Crops Information

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Development of SNP marker set for marker-assisted backcrossing (MABC) in cultivating tomato varieties

  • Park, GiRim;Jang, Hyun A;Jo, Sung-Hwan;Park, Younghoon;Oh, Sang-Keun;Nam, Moon
    • Korean Journal of Agricultural Science
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    • v.45 no.3
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    • pp.385-400
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    • 2018
  • Marker-assisted backcrossing (MABC) is useful for selecting offspring with a highly recovered genetic background for a recurrent parent at early generation unlike rice and other field crops. Molecular marker sets applicable to practical MABC are scarce in vegetable crops including tomatoes. In this study, we used the National Center for Biotechnology Information- short read archive (NCBI-SRA) database that provided the whole genome sequences of 234 tomato accessions and selected 27,680 tag-single nucleotide polymorphisms (tag-SNPs) that can identify haplotypes in the tomato genome. From this SNP dataset, a total of 143 tag-SNPs that have a high polymorphism information content (PIC) value (> 0.3) and are physically evenly distributed on each chromosome were selected as a MABC marker set. This marker set was tested for its polymorphism in each pairwise cross combination constructed with 124 of the 234 tomato accessions, and a relatively high number of SNP markers polymorphic for the cross combination was observed. The reliability of the MABC SNP set was assessed by converting 18 SNPs into Luna probe-based high-resolution melting (HRM) markers and genotyping nine tomato accessions. The results show that the SNP information and HRM marker genotype matched in 98.6% of the experiment data points, indicating that our sequence analysis pipeline for SNP mining worked successfully. The tag-SNP set for the MABC developed in this study can be useful for not only a practical backcrossing program but also for cultivar identification and F1 seed purity test in tomatoes.

Wind Profile in Rice Paddy Field (수도 재배 논에서 공기유동 프로파일)

  • 이중용;안은수
    • Journal of Biosystems Engineering
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    • v.26 no.3
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    • pp.221-228
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    • 2001
  • Chemical application, one of the most important crop management processes happened to cause spray drift, that would threaten farmers in field as well as dwellers in rural region. Spray drift was affected by micro-meteorological parameters. A study to evaluate short distance drift characteristics of a boom sprayer in paddy fields has been undergoing. This study is the first step of the research. Main purpose of the was conducted to develop a mean wind profile and to get information on turbulence intensities above and within rice canopy. Wind in rice paddy field were measured at every 10cm from 10 to 180cm above the ground using a 2-dimensional probe and a hot wire anemometer system. Main results were summarized as follows. 1. Mean wind profile was modeled as; Equations. see full-text 2. Roughness length and zero-displacement in rice canopy were analyzed to be respectively 0.04 and 0.7∼0.72 times of the canopy height. The values are smaller comparing to those of other crops because rice canopy is flexible and uniform comparing to other crops. 3. Turbulence intensities (Tl) was greater as close to the ground and became constant at heights greater than 1.5Hc. where Tl’s were 0.4 and 0.15 in horizontal and vertical direction respectively.

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Potential Risk of Genetically Modified Plants in Korean Ecosystem: a Proposal for Unintended Effects on Korean Wild Species

  • Shim, Sang-In;Lee, Byung-Moo;Kang, Byeung-Hoa
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.46 no.2
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    • pp.157-163
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    • 2001
  • Introgression from genetically modified plants (GMPs) may be dependent on the genetic similarity to wild relative plants. In Korea, many wild plant species are botanically related to the cultivated plants that have a potential to be genetically transformed. The controversy for hazards of GMPs is continuing because the studies on gene flow or introgression are little. Based on the systematic criteria, we have surveyed Korean wild plant species that showed the similarity to cultivating crops. The consideration for feasibility of genetic pollution (introgression of transgene) is necessary for the successful accomplishment in the practical use of GMPs. Although the detrimental effects of GMPs on wild relatives have not been clearly verified, Korean wild plant species related to crop plant (potential GMP) have to be investigated with respect to the introgression. Korean flora consists of ca. 5,500 species. Among them, 1,448 species are classified as weed species (966 native, 325 naturalized, and 167 escaped ones), which is vulnerable to GMPs in term of introgression. We suggested the principal Korean wild plants related to major crops that might be affected by GMPs via introgression. The investigated species herein are selected based on the morphological and phenological relationship. It is necessary to verify the genetic relationship between cultivated plants and wild relatives sing more precise molecular techniques, which provide the information of likelihood for the introgression of transgene.

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Effects of Meteorological Elements in the Production of Food Crops: Focused on Regression Analysis using Panel Data (기상요소가 식량작물 생산량에 미치는 영향: 패널자료를 활용한 회귀분석)

  • Lee, Joong-Woo;Jang, Young Jae;Ko, Kwang-Kun;Park, Jong-Kil
    • Journal of Environmental Science International
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    • v.22 no.9
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    • pp.1171-1180
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    • 2013
  • Recent climate change has led to fluctuations in agricultural production, and as a result national food supply has become an important strategic factor in economic policy. As such, in this study, panel data was collected to analyze the effects of seven meteorological elements and using the Lagrange multipliers method, the fixed-effects model for the production of five types of food crop and the seven meteorological elements were analyzed. Results showed that the key factors effecting increases in production of rice grains were average temperature, average relative humidity and average ground surface temperature, while wheat and barley were found to have positive correlations with average temperature and average humidity. The implications of this study are as follow. First, it was confirmed that the meteorological elements have profound effects on the production of food crops. Second, when compared to existing studies, the study was not limited to one food crop but encompassed all five types, and went beyond other studies that were limited to temperature and rainfall to include various meterological elements.

Correlation Analysis between Meteorological Factors and Crop Products (농산물 생산량과 기상요소의 상관관계 분석)

  • Lee, Ki-Kwang;Ko, Kwang-Kun;Lee, Joong-Woo
    • Journal of Environmental Science International
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    • v.21 no.4
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    • pp.461-470
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    • 2012
  • Agriculture is more influenced by environmental factors rather than other industries. Among the environmental factors, the meteorological conditions mainly impact the output of agricultural products. Hence, the purpose of this study is to analyze the impact of meteorological factors on the output of elemental agricultural products. As a first step, we obtained the data of the meteorological factors (i.e., precipitation, humidity, temperature, insolation, snowdrifts, wind velocity) and the output of the various agricultural products (i.e., grain, fruits and vegetables, root crops, green vegetables, seasoned vegetables, fruits, special crops) from the year 1990 to 2009 (20 years) of Seoul and the six metropolitan cities in Korea. Then, the analysis of the correlation between the agricultural product with the largest output and the meteorological factors of the place where the corresponding agricultural product is most produced, was carried out in order to determine the core meteorological factor that most impacts the output of agricultural product. The correlation analysis revealed that humidity, insolation and wind velocity have been the crucial meteorological factors to influence the output of the agricultural products. From the result, we can induce that the meteorological forecast information about the vital meteorological factors, i.e., humidity, insolation and wind velocity, facilitates the optimized cultivation plan to maximize the output of agricultural products.

Estimating Optimal-Band of NDVI and GNDVI by Vegetation Reflectance Characteristics of Crops.

  • Shin, Hyoung-Sub;Park, Jong-Hwa;Park, Jin-Ki;Kim, Seong-Joon;Lee, Mi-Seon
    • Proceedings of the KSRS Conference
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    • 2008.10a
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    • pp.151-154
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    • 2008
  • Information on the area and spatial distribution of crop fields is needed for biomass production, arrangement of water resources, trace gas emission estimates, and food security. The present study aims to monitor crops status during the growing season by estimating its aboveground biomass and leaf area index (LAI) from field reflectance taken with a hand-held radiometer. Field reflectance values were collected over specific spectral bandwidths using a handheld radiometer(LI-1800). A methodology is described to use spectral reflectance as indicators of the vegetative status in crop cultures. Two vegetation indices were derived from these spectral measurements. In this paper, first we analyze each spectral reflectance characteristics of vegetation in the order of growth stage. Vegetation indices (NDVI, GNDVI) were calculated from crop reflectance. And assess the nature of relationships between LAI and VI, as measured by the in situ NDVI and GNDVI. Among the two VI, NDVI showed predictive ability across a wider range of LAI than did GNDVI. Specific objectives were to determine the relative accuracy of these two vegetation indices for predicting LAI. The results of this study indicated that the NDVI and GNDVI could potentially be applied to monitor crop agriculture on a timely and frequent basis.

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Isolation of Genes Specifically Expressed in Different Developmental Stages of Pleurotus ostreatus Using Macroarray Analysis

  • Lee, Seung-Ho;Joh, Joong-Ho;Lee, Jin-Sung;Lim, Jong-Hyun;Kim, Kyung-Yun;Yoo, Young-Bok;Lee, Chang-Soo;Kim, Beom-Gi
    • Mycobiology
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    • v.37 no.3
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    • pp.230-237
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    • 2009
  • The oyster mushroom (Pleurotus ostreatus) is one of the most important edible mushrooms worldwide. The mechanism of P. ostreatus fruiting body development has been of interest both for the basic understanding of the phenotypic change of the mycelium-fruiting body and to improve breeding of the mushrooms. Based on our previous publication of P. ostreatus expressed sequence tag database, 1,528 unigene clones were used in macroarray analysis of mycelium, fruiting body and basidiospore developmental stages of P. ostreatus. Gene expression profile databases generated by evaluating expression levels showed that 33, 10, and 94 genes were abundantly expressed in mycelium, fruiting body and basidiospore developmental stages, respectively. Among them, the genes specifically expressed in the fruiting body stage were further analyzed by reverse transcription-polymerase chain reaction and Northern blot to investigate temporal and spatial expression patterns. These results provide useful information for future studies of edible mushroom development.

Development of an Integrated Controller to the Control Vertical Agitation Heater and Facilities (수직교반히터 및 시설물 제어를 위한 통합 제어기 개발)

  • Kim, Jin-Ha;Yoo, Seung-Hyeok;Kim, Eung-Kon
    • The Journal of the Korea institute of electronic communication sciences
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    • v.15 no.4
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    • pp.753-758
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    • 2020
  • In this paper, we intend to develop a control system that can apply the developed vertical stirring heater to the facility house and control the other facilities (circulating fan, ventilation fan, window using a switching motor, ceiling, and dehumidification). Through this, it is intended to increase the cultivation efficiency of crops and improve storage environment of crops held by non-heated storage or storage warehouses to increase the storage period and freshness. In addition, ICT monitoring technology is added to enable users to easily solve problems when there is a problem due to changes in the cultivation and storage environment with Real Time Control (RTC).

Optimal Time Period for Using NDVI and LAI to Estimate Rice Yield

  • Yang, Chwen-Ming;Chen, Rong-Kuen
    • Proceedings of the KSRS Conference
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    • 2003.11a
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    • pp.10-12
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    • 2003
  • This study was to monitor changes of leaf area index (LAI) and normalized difference vegetation index (NDVI), calculated from ground-based remotely sensed high resolution reflectance spectra, during rice (Oryza sativa L. cv. TNG 67) growth so as to determine their relationships and the optimum time period to use these parameters for yield prediction. Field experiments were conducted at the experimental farm of TARI to obtain various scales of grain yield and values of LAI and NDVI in the first and the second cropping seasons of 2001-2002. It was found that LAI and NDVI can be mutually estimated through an exponential relationship, and hence plant growth information and spectral remote sensing data become complementary counterparts through this linkage. Correlation between yield and LAI was best fitted to a nonlinear function since about 7 weeks after transplanting (WAT). The accumulated and the mean values of LAI from 15 days before heading (DBH) to 15 days after heading (DAH) were the optimum time period to predict rice yield for First Crops, while values calculated from 15 DBH to 10 DAH were the optimal timing for Second Crops.

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Study on Three-dimension Reconstruction to Low Resolution Image of Crops (작물의 저해상도 이미지에 대한 3차원 복원에 관한 연구)

  • Oh, Jang-Seok;Hong, Hyung-Gil;Yun, Hae-Yong;Cho, Yong-Jun;Woo, Seong-Yong;Song, Su-Hwan;Seo, Kap-Ho;Kim, Dae-Hee
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.18 no.8
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    • pp.98-103
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    • 2019
  • A more accurate method of feature point extraction and matching for three-dimensional reconstruction using low-resolution images of crops is proposed herein. This method is important in basic computer vision. In addition to three-dimensional reconstruction from exact matching, map-making and camera location information such as simultaneous localization and mapping can be calculated. The results of this study suggest applicable methods for low-resolution images that produce accurate results. This is expected to contribute to a system that measures crop growth condition.