• Title/Summary/Keyword: ClusterAnalysis

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Genetic Diversity and Relationship by SSR Markers of Korean Soybean Cultivars (한국 콩 육성품종의 SSR마커에 의한 유전적 다양성과 유연관계)

  • Kim Seong-Hun;Jung Jong-Wook;Moon Jung-Kyung;Woo Sun-Hee;Cho Yong-Gu;Jong Seung-Keun;Kim Hong-Sig
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.51 no.3
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    • pp.248-258
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    • 2006
  • Genetic diversity of 91 Korean soybean cultivars was assessed with 20 simple sequence repeat (SSR). Twenty SSR loci generated a total of 149 alleles. The number of alleles for each SSR locus ranged from 3 to 15 with a mean of 7.5 alleles. Genetic diversity estimated by PIC value of 91 cultivars was ranged from 0.424 to 0.905 with an average of 0.711. Cluster analysis based on Nei's genetic distances classified 91 soybean cultivars except Geomjeongkong 4 into 7 groups. The majority groups were I, IV, and VI which included 26, 24, and 18 cultivars, respectively. Obvious differences in genetic diversity appeared to be related with the released periods of cultivars and utilization type of cultivars, but not with breeding sites. Cultivars released in 1970's and in 1990's showed the lowest and the highest genetic diversities with 0.576 and 0.706, respectively. Soybean cultivars for vegetable and early maturity showed the lowest genetic diversity with 0.514, while those for soy sauce and tofu showed the highest genetic diversity with 0.691. Genetic distance between soybean cultivar groups developed before 1969 and during 1970's was the nearest, while genetic distance between those developed in 1970's and 1990's was the furthest. Cultivar group for vegetable and early maturity showed the furthest genetic distance with cultivar group for soy sauce and tofu, while it showed the nearest genetic distance with cultivar group for cooking with rice. Genetic distance was greater between soybean cultivar groups developed in Suwon and Iksan than between those developed in Milyang and Iksan.

Spatio-Temporal Distribution of Benthic Polychaetous Community along the South-eastern Coast of Geoje Is. (거제도 남동부 연안 저서다모류군집의 시.공간적 분포)

  • Lim, Kyeong-Hun;Lee, Jung-Ho;Shin, Hyun-Chool
    • Korean Journal of Environmental Biology
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    • v.24 no.4
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    • pp.392-407
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    • 2006
  • This study was seasonally undertaken to investigate the benthic polychaetous community along the South-eastern coast of Geoje Is., in February 2004 to November. The macrobenthic fauna showed mean density of 953 md. $m^{-2}$ in February, 1,193 ind. $m^{-2}$ in May, 1,130 ind. $m^{-2}$ in September and 991 ind. $m^{-2}$ in November. Major faunal groups are polychaetes, crustaceans and mollusks, corresponding to 81.6%, 7.9%, 7.0% in total mean density during the sampling seasons, respectively. There was significant difference (two-way ANOVA, p<0.001) among stations in densities of polychaetes. But no significant relationship could be found between the densities of polychaetes and sampling seasons (two-way ANOVA, p>0.05). The density and the species number of polychaetes were high in the coastal area near the Jisepo port, independent of sampling seasons. Several indicator species for the organically enriched environments such as Lumbrineris longifolia, Tharyx sp., Heteromastus filiformis showed high densities during all study periods. Also Magelona japonica included in Ecolgical group I was the most abundant in the whole study period except for February. Cluster analysis on the basis of the species composition showed that the study area could be divided into 3 regions. The density of benthic polychaetes in the coastal area near Jisepo was higher than that in the other assemblages of the study area, due to some predominant opportunistic species, such as Lumbrineris longifolia, Tharyx sp. and Heteromastus filiformis. In addition, the two-way ANOVA showed significant differences among the distribution of AMBI (AZTI's Marine Biotic Index) values, both in sampling stations (p<0.001) and seasons (p<0.01). According to the classification proposed by Borja et at. (2000), the study area was slightly disturbed site.

Macrobenthic Faunal Assemblages on the Soft-Bottoms around Dokdo in the East Sea, Korea (한국 동해 독도 주변 천해 및 사면해역의 대형저서동물군집)

  • Choi, Jin-Woo;Hyun, Sang-Min;Kim, Dong-Sung;Kim, Woong-Seo
    • Ocean and Polar Research
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    • v.24 no.4
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    • pp.429-442
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    • 2002
  • The faunal assembalges of macrobenthos and their habitat conditions on the soft-bottoms around Dokdo(Dok Island) was investigated using a box corer and a van Veen grab in Sept. 1999 and May 2000. The sediments in the slope sites were composed of sand particles and those in Ullneung Basin were mud. The sediments in the shelf sites were in the range of fine to medium sand. The organic content of the slope sediments was in the range of 1 to 2%. The macrobenthos occurred at the slope sites represented by 15faunal groups belonging to 8 phyla, and the major faunal group was polychaetous annelids. They comprised ca. 80.6% in slope sites, and 84.8% in shelf sites. Dominant species in the slope were Exogone verugera(40.9%), Cossura longocirrata (8.4%), Tharyx sp. (6.6%), Scalibregma inflatum (4.9%), Aedicira sp. (4.7%), Aricidea ramosa (3.8%), and Sigambra tentaculata (3.7%). Dominant species in the shelf were Chone sp. (49.3%), Tharyx sp. (18.4%), Ophelina acuminata (6.7%), Chaetozone setosa (3.8%), Glycera sp. (2.6%), and Aedicira sp. (2.4%). The mean densities of macrobenthos in the slope and shelf area were $2,028\;ind./m^2$ and $456\;ind./m^2$, respectively. The trophic composition of benthic polychaete worms in the slope area was different from that in shallow shelf area: surface deposit feeding worms were most abundant in slope area whereas filter feeding worms in shelf area. According to the cluster analysis and MDS plots, the spatial distribution of macrobenthos in Dokdo slope region was related with the sediment properties such as particle size and organic content. In the case of vertical distribution of macrobenthos in slope sites, most faunas concentrated in the upper sediment layer within 2cm depth.

The Community Structure of Macrobenthic Assemblages in the Taehwa River Estuary, Ulsan, Korea (울산 태화강 하구역에 서식하는 대형저서동물의 군집구조)

  • Kim, Hyung-Chul;Choi, Byoung-Mi;Jung, Rae-Hong;Lee, Won-Chan;Yun, Jae-Seong;Seo, In-Soo
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.22 no.6
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    • pp.694-707
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    • 2016
  • This study investigated the community structure of macrobenthic assemblages in the Taehwa River Estuary, Ulsan, Korea. Macrobenthos were collected with a Van Veen Grab Sampler during February and November 2012. The total species number and mean density were $176species/9.6m^2$ and $1,992inds./m^2$, respectively. Polychaetes were the most dominant faunal group in terms of species (91 species) and abundance ($1,463inds./m^2$). The major dominant species were polychaetes Minuspio japonica ($609{\pm}1,221inds./m^2$), Hediste japonica ($174{\pm}318inds./m^2$), Tharyx sp.1 ($106{\pm}283inds/m^2$), Lumbrineris longifolia ($79{\pm}207inds./m^2$), bivalve Theora fragilis ($114{\pm}272inds./m^2$) and amphipod Grandidierella japonica ($88{\pm}223inds./m^2$). Based on community statistics (cluster analysis and non-metric multidimensional scaling (nMDS) ordination), the macrobenthic community was divided into three station groups. Group I(freshwater dominated stations 2-6 with coarse sediment) was characterized by a high abundance of polychaetes Minuspio japonica, Hediste japonica, Capitella capitata, Pseudopolydora kempi, amphipods Grandidierella japonica and Apocorophium acutum. Group II (ecotone, stations 7-9 with mixed sediment) was numerically dominated by bivalve Theora fragilis, polychaetes Cirriformia tentaculata, Tharyx sp.1, Lumbrineris longifolia and Chaetozone sp. Finally, Group III (seawater dominated stations 10-12 with fine sediment) was characterized by a high density of polychaete Magelona japonica. These results showed that changes in salinity gradient and sedimentary characteristics were the main factors behind spatial changes in the macrobenthic communities of the Taehwa River Estuary.

The association of snack consumption, lifestyle factors, and pediatric obesity with dietary behavior patterns in male adolescents (남자 청소년의 식행동 패턴에 따른 간식 섭취, 생활 습관 요인 및 비만과의 연관성 연구)

  • Kim, Min-Ji;Song, SuJin;Park, So Hyun;Song, YoonJu
    • Journal of Nutrition and Health
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    • v.48 no.3
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    • pp.228-235
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    • 2015
  • Purpose: Along with the adaptation of a Western dietary pattern and low physical activity, pediatric obesity is increasing in Korea, especially for boys. The aim of this study was to identify dietary behavior patterns and examine the snack consumption, dietary habit, and pediatric obesity by pattern groups. Methods: Boys aged 15~19 years were recruited from one high school in Seoul. A questionnaire including dietary behaviors and lifestyle factors was administered and height and weight were measured. A total of 932 boys participated except boys who had missing or incomplete response (n = 30). Three dietary behavior patterns were identified by cluster analysis; 'Healthy pattern', 'Mixed pattern' and 'Unhealthy pattern'. Results: Snack consumption differed according to dietary behavior patterns group. The healthy and mixed patterns showed higher frequencies of white milk and fruit consumption while the unhealthy pattern as well as the mixed patterns showed higher frequencies of sweetened snack and ice cream consumption. Food availability at home of each food differed according to pattern groups but showed a similar trend with food consumption. Regarding dietary habits, the mixed pattern showed higher proportion of taking dietary supplement and eating dessert while the unhealthy pattern showed lower proportion of eating regular meals and appropriate amount of meals. When the healthy pattern was set as a reference group, the odds ratio of pediatric obesity was 1.11 (CI 0.65-1.87) in the mixed pattern group and 1.88 (CI 1.14-3.10) in the unhealthy pattern group. Conclusion: In conclusion, dietary behaviors including snack consumption and lifestyle factors were connected. Unbalanced diet and undesirable dietary practice are important determinants in pediatric obesity.

Community Structure of the Macrobenthos in the Soft Bottom of Yongsan River Estuary, Korea 2. The Occurrence of Summer Hypoxia and Benthic Community (영산강 하구역의 연성저질에 서식하는 저서동물 군집 2. 여름철 빈산소 수괴의 출현과 저서동물 분포)

  • LIM Hyun-Sig;PARK Kyung-Yang
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.31 no.3
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    • pp.343-352
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    • 1998
  • The relationship between summer hypoxia in bottom water layer and benthic community structure was discussed at forty sampling stations in semi-enclosed Youngsan River estuarine bay, Korea. The oxygen deficient layer less than $2.0 mg/\ell$ was widely developed in the inner estuarine stations in summer due to the summer stratification. A total of 141 species was occurred, with a mean density of $1,923 ind./m^2$ and biomass of $79.44\;g/m^2$ in summer season. The species number was significantly increased with the increment of the bottom dissolved oxygen, whereas density and biomass were partially correlated within the low oxygen level of $2.0\;mg/\ell$. These results imply that benthic community structures are affected by bottom oxygen depletion in summer. Cluster analysis showed that the benthic community could be classified into three station groups. These station groups from the species composition coincided with the groups based on the environmental factors. This fact suggests that the overall spatial distribution of macrozoobenthos in Youngsan River estuarine bay in summer should be controlled by the summer hypoxia and clay content of the area. Group-I was located the innermost estunrine bay from Mokpo Harbour to near the dike, where summer hypoxia was developed and one bivalve Theora fragilis, two polychaetes, Tharyx sp. and Lumbrineris longifolia were dominated. Group-II, the central transitory area of the estuarine bay between two another stational groups, where two bivalves Theora fragilis, Raetellops pulchella and a polychaete Tharyx sp. predominated with relatively low density compared to that of Group-I. Group-III, the mouth part of the estunrine bay exposed to the open sea, where a polychaetes Poecilochaetus johnsoni and a bivalve Yoldia Johanni predominated.

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Community Structure of Macrobenthos in the Subtidal Soft Bottom in Semi- enclosed Youngsan River Estuarine Bay, Southwest Coast of Korea (반폐쇄적인 영산강 하구역 조하대 연성저질의 저서동물 군집)

  • LIM Hyun-Sig;PARK Kyung-Yang
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.32 no.3
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    • pp.320-332
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    • 1999
  • Investigations were made on the community structure of macrobenthos in the subtidal soft bottom around semi-enclosed Youngsan River estuarine bay, southwest coast of Korea during the period from April 1995 to February 1996. Three macrobenthos samples were collected at 40 stations using a van Veen grab(0.1 m^2) during the study period. A total of 206 species of macrobenthos was identified. Their mean density and biomass (wet-weight, wwt) were $1,137 ind./m^2$ and $65.28 gwwt/m^2$, respectively. Of these, there were 74 species of polychaetes ($36\%$), 60 molluscs ($39\%$), 51 crustaceans ($25\%$) and 21 miscellaneous taxa. Molluscs were represented as a density- and biomass-dominant faunal group with a mean density of $601 ind./m^2$($53\%$ of the total benthic animals) and biomass of $25.37 gwwt/m^2$($39\%$ of total biomass): It was followed by polychaetes with $405 ind./m^2$($40\%$ of the total density). Total number of species and diversity were Bow in the inner estuarine bay containing high mud content and organic matter, whereas they were high in the outer stations containing low mud content and organic matter. Major dominant species were one biralve, Theora fragilis and three Polychaetes, Tharyx sp., Poeciloceatus johnonni and Lumbrineris lontifolia whose mean densities were $490ind./m^2$, $96ind./m^2$, $74ind./m^2$and $52 ind./m^2$, respectively. Cluster analysis indicated that the study area could be divided into four station groups: two innermost station groups, a central bay and an outer station group. The species diversity increased from the inner station group toward the outer groups. These results were discussed in terms of both the environmental factors and distribution of benthic community.

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Distribution of Benthic Macrofauna in subtidal area and on sand flat of Sindu-ri coast, Korea (신두리 해안의 조하대와 모래 갯벌에 서식하는 대형저서동물의 분포)

  • Koo, Bon Joo;Shin, Sang Ho;Woo, Han Jun
    • Journal of Wetlands Research
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    • v.7 no.2
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    • pp.69-88
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    • 2005
  • Distribution of benthic macrofauna was surveyed in the subtidal area and on the sand flat of Sindu-ri coast during July 2002. A total of 134 species, 3,511 individuals and 388g biomass of macrobenthos were sampled inclusively from the study sites. 109 species with a mean density of $1,298ind./m^2$ and biomass of $69.4g/m^2$ were collected from 10 stations established in the subtidal area. Polychaetes were represented as a dominant faunal group of the subtidal area in both species richness and density with values of 54 species and $813ind./m^2$. Cluster analysis based on the faunal composition showed that the subtidal area could be divided into four stational groups according to sedimentary characteristics: Cirrophorus armatus - Lumbrineris longifolia association on the mud sediment with pebbles near aqua-farms; Aonides oxycephala association on the rocky bed; Scoloplos armiger - Grandifoxus cuspis association on the sand-dominated sediment along the lowest low water; a association with higher evenness on the sand-dominated sediment in the depth. Although having characteristics of high value in species richness, density and species diversity, the macrobenthic association around the farming area was dominated by the opportunistic species such as Lumbrineris longifolia and Tharyx sp. Natural community represented by S. armiger and G. cuspis was developed in most sand-dominated areas. 50 species were sampled with a mean density of $2,443ind./m^2$ and biomass of $381.3g/m^2$ from eight+ stations along two transects on Sindu-ri sand flat. Mollusks were represented as a dominant faunal group of the sand flat in species richness, density and biomass with values of 20 species, $1,345ind./m^2$ and $350.4g/m^2$, respectively. Umbonium thomasi, Veneridae sp., Mandibulophoxus mai, Armandia lanceolata, Eohaustorius spinigerus, Urothoe convexa were dominant species and these species accounted for over 83% of total individuals. There were three distinct zones of macrobenthos on Sindu-ri sand flat according to the extent of exposure time. The upper zone was dominated by Scopimera globosa, the middle zone was characterized by M. mai, and the lower zone was dominated by E. spinigerus. Sindu-ri coastal area was considered as a healthy habitat for macrobenthos, except for around the farming area. It was considered that Sindu-ri coastal area including the sand flat connected to the sand dune of natural monument was a valuable habitat as a protected site in having no pollution source and no artificial structure.

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Community Structure of Subtidal Macrobenthos in Hampyung Bay during Autumn in 1997, Southwest Coast of Korea (한국 서남해역 함평만 조하대의 가을철 저서동물 군집구조)

  • LIM Hyun-Sig;CHOI Jin-Woo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.34 no.4
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    • pp.327-339
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    • 2001
  • Community structure of macrobenthos was studied at forty one stations of Hampyung Bay, southwest coast of Korea. Three replicate sediment samples were taken at each station in October 1997, using a van Veen grab (surface area $0.1\;m^2$). The types of surface sediment in the sampling area were muddy sandy gravel between bay mouth and bay proper, and gravelly sandy mud between bay proper and inner bay stations. The particulate organic carbon content in the surface sediment was $0.23\sim0.69\%\;(0.44\pm0.10\%)$. A total of 168 species collected during the study period is composed of 58 of polychaetes, 54 of crustaceans, 34 of molluscs and 22 of miscellaneous. The former two taxa together were accounted for $66.6\%$ of the total number of species. The mean density was $1,168 ind./m^2$, comprising $684 ind./m^2$of molluscs ($58.6\%$), $381 ind./m^2$of polychaetes ($32.6\%$), and $90 ind./m^2$of crustaceans ($13.2\%$). The mean biomass was $358.65 g/m^2$, which is consisted of $302.97 g/m^2$of molluscs ($84.5\%$), $24.20 g/m^2$of echinoderms ($6.7\%$), and $19.16 g/m^2$of crustaceans ($5.4\%$). Major dominant species at the inner stations of the study area was Ruditapes philippinarum with a density of $520ind./m^2$($44.5\%$), and Lumbrineris lontifolia with $183ind./m^2$($15.7\%$), while that at bay mouth stations Pitar indecoroides with $56ind./m^2$. Reticunassa festiva, Heteromastus sp., Praxillella affinis, Chone sp. and Tharyx sp. were at from all stations. Based on the cluster analysis, the macrobenthic community in the bay was classified into five station groups depending on sediment types: Group A, a high gravel content in the sediment; Group B, stations with high mud content from bay mouth to bay proper, Group C, stations with fine and poorly sorted sediment from bay proper to the inner bay. The distribution pattern of the number of species, abundance and biomass is discussed in relation to environmental variables.

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Species Occurrence and Food Chain of Fisheries Resources, Nekton, on the Coast of Pukchon, Cheju Island 1. Species composition and diversity (제주도 북촌연안 수산자원유영생물의 출현과 먹이연쇄에 관한 연구 1. 종조성과 다양도)

  • GO You-Bong;SHIN Heau-Sub
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.21 no.3
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    • pp.131-138
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    • 1988
  • Collection of organisms for the fisheries resources community were obtained with a set net during 8 months between May, 1985 and May, 1986 on the coast of Pukchon, Cheju Island, Korea. Most of organisms, representing 36 species, were less than 20cm $(93\%)$ in length, and 130g $(91\%)$ in weight. The four most abundant species were jack mackerel, Trachurus japonicus ; squid, Todarodes pacificus : damsel fish, Chromis notatus : and rabbit fish, Siganus fuscescens, which comprised about $83\% in number and about $73\%$ of the total catch. The diversity index of the number of species and information indices for individual and catch were the highest in October and the lowest in Septemer, indicating a close relationship with the change between the species number and catch at that time. A cluster analysis of 17 species was illustrated from the similarity matrix. All of the 17 species were grouped at the 0.2 similarity level. Three groups were present at 0.60 level, whereas species in other groups were sporadic in occurrence.

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