• Title/Summary/Keyword: Classification trees

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The Trend and Achievements of Forest Genetics Research in Abroad (선진국(先進國)에 있어서의 임목육종연구(林木育種硏究)의 동향(動向))

  • Hyun, Sin Kyu
    • Journal of Korean Society of Forest Science
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    • v.14 no.1
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    • pp.1-20
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    • 1972
  • The trend and achievements of forest genetics research in abroad were investigated through observation tours and reference work and following facts were found to be important aspects which should be adopted in the forest genetics research program in Korea. Because of world wide recognization on the urgency of taking a measure to reserve some areas of the representative forest type on the globe before the extingtion of such forest type as the results of continuous exploitations of the natural forests to meet the timber demand all over the world, it is urgently needed to take a measure to reserve certain areas of natural stand of Pinus koraiensis, Pinus parviflora, Pinus densiflora f. erectra, Abies koreana, Quercus sp., Populus sp., etc. as gene pool to be used for the future program of forest tree improvement. And the genetic studies of those natural forest of economic tree species are also to be performed. 1. Increase of the number of selected tree for breeding purpose. Because of the fact that the number of plus tree at present is too small to carry out selection program for tree improvement, particularly for the formation of source population for recurrent selection of parent trees of the 2nd generation seed orchard it is to be strongly emphasized to increase the number of plus tree by alleviating selection criteria in order to enlarge the population size of plus trees to make the selection program more efficient. 2. Progeny testing More stress should be placed on carrying out progeny testing of selected trees with open pollinated seeds. And particular efforts are to be made for conducting studies on adult/juvenile correlation of important traits with a view to enable to predict adult performances with some traits revealed in juvenile age thus to save time for progeny testing. 3. Genotype-environment interaction Studies on genotype and environment interaction should be conducted in order to elucidate whether the plus trees selected on the good site express their superiority on the poor site or not and how the environment affect the genotype. And the justification of present classification of seed distribution area should be examined. 4. Seed orchard of broad leaf tree species. Due to the difficulty of accurate comparison of growth rate of neighbouring trees of broad leaf tree species in natural stand, it is recommended that for the improvement of broad leaf trees a seedling seed orchard is to be made by roguing the progeny test plantation planted densely with control pollinated seedlings of selected trees. 5. Breeding for insect resistant varieties. In the light of the fact that the resistant characteristics against insect such as pine gall midge (Thiecodiplosis japonensis U. et I.) and pine bark beetle (Myelophilus pinipera L.) are highly correlated with the amount and quality of resin which are known as gene controlled characteristics, breeding for insect resistance should be carried out. 6. Breeding for timber properties. With the tree species for pulp wood in particular, emphasis should be placed upon breeding for high specific gravity of timber. 7. Introduction of Cryptomeria and Japanese Cypress In the light of the fact that the major clones of Cryptomeria are originated from Yoshino source and are being planted up to considerably north and high elevation in Japan, those species should be examined on their cold resistance in Korea by planting them in further northern part of the country.

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Vegetation Structure of the Bulguksa Buddhist Temple Forest in the Gyeongju National Park (경주국립공원 불국사 사찰림의 식생구조)

  • Kang, Hyun-Mi;Choi, Song-Hyun;Lee, Soo-Dong;Cho, Hyun-Seo;Kim, Ji-Suk
    • Korean Journal of Environment and Ecology
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    • v.26 no.5
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    • pp.787-800
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    • 2012
  • The purpose of this study was to investigate the vegetation structure of Bulguksa around Buddhist Temple Forest in the Gyeongju National Park. To do so, forty-two plots($100m^2$) were set up and surveyed. The surveyed plots were divided into four groups according to the analysis of classification by TWINSPAN; (I) Pinus densiflora-Pinus koraiensis community, (II) Pinus densiflora community, (III) Pinus densiflora-Acer palmatum community, (IV) Acer palmatum-Pinus densiflora community. The results of vegetation structure analysis were; Bulguksa around Buddhist Temple Forest in the Gyeongju National Park were dominated by Pinus densiflora. IV community, influx of Acer palmatum in Pinus densiflora community, Acer palmatum-Pinus densiflora community are believed to be a change to the community. But, recent spontaneously is growing Quercus variabilis, Quercus aliena, Quercus serrata, Quercus mongolica in understory and shrub layer. Later, it is expected that Pinus densiflora competition. The forest vegetation age of the study area is Pinus densiflora were dominant trees in forest was 30~100 years, old while that of Acer palmatum was 30~36 years old.

Analysis of Factors Influencing upon the Metro Wear Using the Classification and Regression Trees (CART 분석을 이용한 지하철 마모 영향인자 분석)

  • Jeong, Min Chul;Lee, Won Woo;Kim, Jung Hoon;Kong, Jung Sik
    • 한국방재학회:학술대회논문집
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    • 2011.02a
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    • pp.38-38
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    • 2011
  • 일반적으로 레일마모는 열차의 주행안전 및 승차감에 미치는 영향이 크고, 소음 진동의 주요원인으로 작용한다. 또한 레일마모가 발생할 경우 궤도구조의 파괴를 촉진시킴으로써 차량 및 궤도유지보수비를 크게 증가시킨다. 따라서 구간 특성 및 환경 영향 인자 등 현장에서 발생하는 마모 원인을 체계적으로 분석함으로써 마모를 저감할 수 있도록 차량운행 조건과 선로선형 및 궤도구조를 설계하는 것은 중요한 과제이다. CART(Classification And Regression Tree; 분류와 회귀나무) 분석은 패키지화된 좋은 분류 및 예측도구 기법으로 나무의 상위 분리수준에서 일반적으로 나타나는 가장 중요한 입력변수들을 사용하는 등의 입력변수를 선정하는 경우 매우 유용하다. 본 연구에서는 다변수 구간특성 및 환경인자를 고려한 검측 자료 상관관계 분석을 위한 회귀 나무기반 모델(TBM: Tree Based Model) 분석 수행을 위해 지하철 2호선 마모 데이터와 마모 데이터에 영향을 미치는 각종 다변수 구간특성 및 환경인자를 사용하였다. 2호선 지하철의 구간특성 인자 및 환경인자는 레일의 종류, 레일의 위치, 도상, 곡률반경, 캔트 슬랙 및 운행 일수 등으로 구분하였다. 레일의 종류는 ks-50kg과 ks-60kg 두 종류의 레일이 있으며, 레일의 위치는 지상과 지하로 크게 구분할 수 있다. 도상은 콘크리트 도상, 자갈 도상과 일부 구간의 방진상 콘크리트 도상으로 구분할 수 있으며, 곡률반경은 직선구간과 완화곡선 구간 및 최소 250m부터 627m까지 분포된 원 곡선 구간으로 구분할 수 있다. 캔트 간격은 최소 96cm 부터 120cm 간격으로 구분하며, 슬랙은 5~9cm에 분포하고, 운행 기간은 해당 기간 동안 유지보수 이력이 없는 구간을 선정하여 2005년부터 2006년까지 4번에 걸쳐 검측된 지하철 2호선 내선 마모데이터를 사용하였다. 총 X1부터 X7까지 총 7개의 구간특성 또는 환경특성을 영향인자로 선정하였으며, 이러한 영향인자에 의해 결정되는 종속 인자로 Y1인 직마모와 Y2인 측마모를 선정하여 이 중 실질적으로 지하철 궤도의 성능 평가에 주요 판단인자로 사용되는 측마모와 구간특성 및 환경영향인자와의 상관관계 분석을 수행하였다. 해당 마모 데이터가 검측되는 기간 동안 유지보수 이력이 없는 12272 point의 데이터를 검출하였고 CART 프로그램을 이용하여 데이터를 분석하였으며, CART 프로그램의 해석을 위해 종속변수인 직마모량은 각 검측 지점의 마모량에 해당하는 등급으로 변환하여 분석을 수행하였다. 레일의 마모에 영향을 미치는 구간특성 및 환경인자와 종속 변수로 사용된 레일의 마모량 사이의 CART를 이용한 상관관계 분석은 실제 구조물에서 영향인자간의 상관 관계와 유사하며, 추후 연구에서는 이를 바탕으로 하여 정량화된 검측 데이터를 종속변수로 하여 구간특성 또는 환경인자 등 외부 영향인자를 고려한 궤도 검측데이터와의 상관관계 분석을 수행할 계획이다.

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Forest Vegetation Classification and Species Composition of Mt. Ilwol, Yeongyang-Gun, Korea (일월산 산림식생의 종구성적 특성)

  • Lee Jung-Hyo;Bae Kwan-Ho;Cho Hyun-Je
    • Korean Journal of Agricultural and Forest Meteorology
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    • v.8 no.3
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    • pp.132-140
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    • 2006
  • Forest vegetation classification and species composition of Mt. Ilwol, Yeongyang-Gun, Korea, were studied combining the Braun-Blanquet approach with numerical syntaxonomical analyses (TWINSPAN). Vegetation types and various ecological characteristics such as flora, constancy classes, species ratio of life-form, species diversity and importance value were analyzed. Sixty-eight samples were taken from a $100m^2$ square plot each. Forest communities were identified as two great types: arid landform of mountainside (AM) and humid fertility of piedmont and valley (HP). The former was divided into 3 communities (Rhododendron mucronulatum, Quercus variabilis, Hosta capitat community) and 2groups, and the latter into 3 communities (Tilia amurensis, Vitis coignetiae, Philadelphus schrenckii community) and 2 groups. Vegetation was classified into 8 units. Floristically, the most represented family was Compositae with 26 species. Species with percentage constance degree of more than 61% was Quercus mongolica (72.1%, IV); Carex siderosticat (III) and Fraxinus rhynchophylla (III) were 50.0 and 41.1%, respectively. Life-forms species ratios for trees, subtrees, shrub, vines, grominoids, forbs and ferns were 18.5, 5.7, 14.9, 6.6, 8.8, 42.4 and 3.1%, respectively, PH type showed from $1.70{\pm}0.50\;to\;1.97{\pm}0.57$ and AM type was from $1.40{\pm}0.18\;to\;1.62{\pm}0.20$ in species diversity; therefore, the former type showed higher species diversity than the latter, According to importance value analysis, Pinus densiflora, Quercus mongolica and Q. variabilis were higher in the tree layer, Q. mongolica in the subtree layer, Fraxinus sieboldiana, R. schlippenbachii, etc. in the shrub layer and Carex siderosticta, Carex humilis, etc. in the herb layer.

A Study on the Identification and Classification of Relation Between Biotechnology Terms Using Semantic Parse Tree Kernel (시맨틱 구문 트리 커널을 이용한 생명공학 분야 전문용어간 관계 식별 및 분류 연구)

  • Choi, Sung-Pil;Jeong, Chang-Hoo;Chun, Hong-Woo;Cho, Hyun-Yang
    • Journal of the Korean Society for Library and Information Science
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    • v.45 no.2
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    • pp.251-275
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    • 2011
  • In this paper, we propose a novel kernel called a semantic parse tree kernel that extends the parse tree kernel previously studied to extract protein-protein interactions(PPIs) and shown prominent results. Among the drawbacks of the existing parse tree kernel is that it could degenerate the overall performance of PPI extraction because the kernel function may produce lower kernel values of two sentences than the actual analogy between them due to the simple comparison mechanisms handling only the superficial aspects of the constituting words. The new kernel can compute the lexical semantic similarity as well as the syntactic analogy between two parse trees of target sentences. In order to calculate the lexical semantic similarity, it incorporates context-based word sense disambiguation producing synsets in WordNet as its outputs, which, in turn, can be transformed into more general ones. In experiments, we introduced two new parameters: tree kernel decay factors, and degrees of abstracting lexical concepts which can accelerate the optimization of PPI extraction performance in addition to the conventional SVM's regularization factor. Through these multi-strategic experiments, we confirmed the pivotal role of the newly applied parameters. Additionally, the experimental results showed that semantic parse tree kernel is superior to the conventional kernels especially in the PPI classification tasks.

Delineation of Provenance Regions of Forests Based on Climate Factors in Korea (기상인자(氣象因子)에 의한 우리 나라 산림(山林)의 산지구분(産地區分))

  • Choi, Wan Yong;Tak, Woo Sik;Yim, Kyong Bin;Jang, Suk Seong
    • Journal of Korean Society of Forest Science
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    • v.88 no.3
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    • pp.379-388
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    • 1999
  • As a first step for delineating the provenance regions of the forest trees in Korea, horizontal zones have been deduced primarily from the various climatic factors such as annual mean temperature, extremely low temperature, relative humidity, annual gum of possible growing days, duration of sunshine and dry index. The basic concept to the delineation of the provenance regions was based on the ecological regions, which was likely to be more practical than that on the basis of the typical provenance regions at the species level. Primary classification of the regions has been based on the forest zones(sub-tropical, warm-temperate, mid-temperate and cool-temperate) as a broad geographic region. Further classification has been carried out using cluster analyses among the basic regions within forest zone. On the basis of clustering, a total of 19 regions including 3 from sub-tropical, 6 from warm-temperate, 8 from mid-temperate and 2 from cool-temperate was horizontally delineated. Of the mean values of 6 climate factors at the broad geographic region level, three factors such as annual mean temperature, extremely low temperature, annual growing days showed directional tendencies from subtropical to cool-temperate, while the others didn't. The values of relative humidity, duration of sunshine and dry index varied among the provenance regions within forest zone. These three factors might he more sensitive by the micro-environment condition than by the macro-environment condition. Present study aimed to delineate the primary provenance regions for tentative application to forest practices. These will be stepwise revised through the supplement using accumulated information regard to genecological data.

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Vegetation Structure of Deciduous Broad-leaved Forest at the Beomeosa(Temple) Valley in Kumjungsan, Busan (부산 금정산 범어사계곡 낙엽활엽수림의 식생구조)

  • Kim, Jeong-Ho;Choi, Song-Hyun;Choi, In-Tae;Yang, Soon-Ja;Lee, Sang-Cheol
    • Korean Journal of Environment and Ecology
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    • v.25 no.4
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    • pp.581-589
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    • 2011
  • The purpose of this study is to investigate the structure of vegetation dominated by deciduous broad-leaved trees at the Beomeosa(Temple) Valley of Mt. Kumjungsan in Busan. To this end, 28 plots were set up and surveyed. The result analyzed by TWINSPAN, one of the classification technique, showed that the communities were divided into six groups which are Carpinus tschonoskii-Deciduous broad-leaved forest community(I), Quercus serrata-C. tschonoskii community(II), C. tschonoskii-Q.s serrata-Pinus densiflora community(III), C. tschonoskii-Quercus serrata-Q. mongolica communtiy(IV), Q. serrata-Deciduous broadleaved forest community(V) and Chamaecyparis obtusa-C. tschonoskii community (VI). Species diversity ranged from 0.3832 to 0.0450. The lowest diversity was Chamaecyparis obtusa community(VI) but the highest was Carpinus tschonoskii-Deciduous broad-leaved forest community(I) and Q. serrata-Deciduous broadleaved forest community(V). The average number of species was 6.8${\pm}$3.2 in the unit area(100$m^2$). Carpinus tschonoskii community at the Beomeosa Valley of Mt. Geumjeongsan was a climatic climax forest having a value to preserve, so a continuous management will be needed.

Analysis of Genetic and Pathogenic Diversity of Ralstonia solanacearum Causing Potato Bacterial Wilt in Korea

  • Cho, Heejung;Song, Eun-Sung;Lee, Young Kee;Lee, Seungdon;Lee, Seon-Woo;Jo, Ara;Lee, Byoung-Moo;Kim, Jeong-Gu;Hwang, Ingyu
    • The Plant Pathology Journal
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    • v.34 no.1
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    • pp.23-34
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    • 2018
  • The Ralstonia solanacearum species complex (RSSC) can be divided into four phylotypes, and includes phenotypically diverse bacterial strains that cause bacterial wilt on various host plants. This study used 93 RSSC isolates responsible for potato bacterial wilt in Korea, and investigated their phylogenetic relatedness based on the analysis of phylotype, biovar, and host range. Of the 93 isolates, twenty-two were identified as biovar 2, eight as biovar 3, and sixty-three as biovar 4. Applied to the phylotype scheme, biovar 3 and 4 isolates belonged to phylotype I, and biovar 2 isolates belonged to phylotype IV. This classification was consistent with phylogenetic trees based on 16S rRNA and egl gene sequences, in which biovar 3 and 4 isolates clustered to phylotype I, and biovar 2 isolates clustered to phylotype IV. Korean biovar 2 isolates were distinct from biovar 3 and 4 isolates pathologically as well as genetically - all biovar 2 isolates were nonpathogenic to peppers. Additionally, in host-determining assays, we found uncommon strains among biovar 2 of phylotype IV, which were the tomato-nonpathogenic strains. Since tomatoes are known to be highly susceptible to RSSC, to the best of our knowledge this is the first report of tomato-nonpathogenic potato strains. These results imply the potential prevalence of greater RSSC diversity in terms of host range than would be predicted based on phylogenetic analysis.

A Study on the Node Split in Decision Tree with Multivariate Target Variables (다변량 목표변수를 갖는 의사결정나무의 노드분리에 관한 연구)

  • Kim, Seong-Jun
    • Journal of the Korean Institute of Intelligent Systems
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    • v.13 no.4
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    • pp.386-390
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    • 2003
  • Data mining is a process of discovering useful patterns for decision making from an amount of data. It has recently received much attention in a wide range of business and engineering fields. Classifying a group into subgroups is one of the most important subjects in data mining. Tree-based methods, known as decision trees, provide an efficient way to finding the classification model. The primary concern in tree learning is to minimize a node impurity, which is evaluated using a target variable in the data set. However, there are situations where multiple target variable should be taken into account, for example, such as manufacturing process monitoring, marketing science, and clinical and health analysis. The purpose of this article is to present some methods for measuring the node impurity, which are applicable to data sets with multivariate target variables. For illustration, a numerical cxample is given with discussion.

Main SNP Identification of Hanwoo Carcass Weight with Multifactor Dimensionality Reduction(MDR) Method (MULTIFACTOR DIMENSIONALITY REDUCTION(MDR)을 이용한 한우 도체중에서의 주요 SNP 규명)

  • Lee, Jea-Young;Kim, Dong-Chul
    • The Korean Journal of Applied Statistics
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    • v.21 no.1
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    • pp.53-63
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    • 2008
  • It is commonly believed that disease of human or economic traits of livestock are caused not by single gene acting alone, but by multiple genes interacting with one an-other. This issue is difficult due to the limitations of parametric statistical method like as logistic regression for detection of gene effects that are dependent solely on interactions with other genes and with environmental exposures. Multifactor dimensionality reduction (MDR) nonparametric statistical method, to improve the identification of single nucleotide polymorphism (SNP) associated with the Hanwoo(Korean cattle) carcass cold weight, is applied and compared with ANOVA results.