• Journal of Aquaculture
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• v.17 no.1
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• pp.12-23
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• 2004

Genomic DNAs were extracted from the muscle of twenty-two specimens of two shortnecked clam, Ruditapes phifippinarum populations collected in Anmyeondo and Seocheon. Genetic differences within and between populations were analysed by random amplified polymorphic DNAs-polymerase chain reaction (RAPD-PCR) using twenty arbitrary decamer primers. Out of 20 primers, 6 generated a total of 1,111 major and minor RAPD bands from individuals of two sites, producing approximately 4.2 average polymorphic bands per primer in individuals from Anmyeondo and ranging in size from less than 50 to larger than 1,500 base pairs (bp). The electrophoretic analysis of RAPD products amplified showed moderate levels of similarity among the different individuals in Seo-cheon population. The average bandsharing values (BS value) of the samples within population from Anmyeondo ranged from 0.155 to 0.684, whereas it was 0.143∼0.782 within population from Seocheon. The average BS value between individuals No. 13 and No. 14 from Seocheon was 0.782 which was higher than that of those from Anmyeondo. The single linkage dendrogram resulted from three primers (OPA-08, -09 and -20), indicating six genetic groupings composed of group 1 (No.4, 8 and 10), group 2 (No. 18), group 3 (No.2, 5 and 7), group 4 (No. 1, 3, 6, 9, 11, 12, 13, 14, 15 and 17), group 5 (16, 19 and 20) and group 6 (No. 21 and 22). In the Seocheon population, the individual No. 18 clustered distinctly from the others of this population. The observed genetic distance between the two populations from Anmyeondo and Seocheon was more than 0.209 (0.247 and 0.275). The shortest genetic distance (0.094) displaying significant molecular differences was between individuals No. 13 and No. 14. Especially, the genetic distance between individuals No. 22 and the remnants among individuals in two geographical populations was highest (0.275). This result illustrated that individual No.22 is distinct from other individuals within two shortnecked populations. The different geographical features of two sites may have caused the genetic diversity in two shortnecked clam populations.

• Parasites, Hosts and Diseases
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• v.58 no.1
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• pp.87-91
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• 2020

Gymnophallid metacercariae found in the Manila clam Ruditapes philippinarum ('Banjirak' in Korean) from Gochang-gun, Jeollabuk-do, Korea were morphologically and molecularly confirmed to be Parvatrema duboisi (Dollfus, 1923) Bartoli, 1974. The metacercariae were morphologically characterized by having a large oral sucker, small ventral sucker, genital pore some distance anterior to the ventral sucker, no ventral pit, and 1 compact or slightly lobed vitellarium, which were all compatible with P. duboisi. Some of the metacercariae were experimentally fed to mice, and adult flukes were recovered at day 7 post-infection. The morphology of the adult flukes was basically the same as that of the metacercariae except for the presence of uterine eggs; the uterus was filled with up to 40 eggs. The nucleotide sequences (1,193 bp) from ITS regions (ITS1, 5.8S rDNA, and ITS2) of the metacercariae showed 99.7% identity with P. duboisi and 75.7% identity with Gymnophalloides seoi deposited in GenBank. These results confirmed the presence of P. duboisi metacercariae in the Manila clam R. philippinarum in an estuary region of Gochang-gun, Korea.

• The Korean Journal of Malacology
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• v.32 no.3
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• pp.165-174
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• 2016

Feeding behaviour of the manila clam Ruditapes philippinarum was qualitatively and quantitatively characterized by comparing the contents composition in digestive tract of the clam and the phytoplankton community in surface sea water in Gomso Bay, west coast of Korea. The contents of digestive tract comprised diatoms (71.5%), dinoflagellates (13.1%), nannoplankton (6.6%), and detritus including mesozooplankton. The abundance of food organisms in digestive tract of the clam was high in winter and spring, while low in summer and autumn. But The biomass of phytoplankton in surface sea water revealed the highest value in autumn. Also, the larger the clam size increases the abundance of food organisms in digestive tract. The dominant species in digestive tract were Paralia sulcata and Navicula arenaria such as benthic diatoms and dinoflagellate cysts, whereas the dominant species in surface sea water were Chaetoceros, Skeletonema, Asterionellopsis such as pelagic diatoms in genus, cryptomonads, and P. sulcata. Analyses of digestive tract revealed that benthic diatoms especially represent an important constituent of food organisms in the malina clam and different of phytoplankton size and morphology explain preference for food selectivity.

• The Korean Journal of Malacology
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• v.26 no.4
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• pp.267-273
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• 2010

From January to December 2007, we have investigated sediment types, environmental factors and density of clam Ruditapes philippinarum inhabited at Oeri, Naeri, Jonghyeon and Bangmiri tidal flats in Gyeonggi Bay off the west coast of Korea. Sediment types of Oeri and Jonghyeon were characterized with well sorted muddy sand. In contrast, Bangmiri tidal flat was mainly composed of poorly sorted gravelly muddy silt and Naeri was characterized with very poorly sorted muddy-sandy gravel. During the course of study, the surface water temperature, salinity, dissolved oxygen and pH ranged 3.2 to $27.0^{\circ}C$, 21.7 to 33.3 ‰, 5.6 to 12.7 mg/l and 7.36 to 8.82, respectively. The suspended solid (SS) ranged from 3.2 to 1,266.0 mg/l and chlorophyll-a level in the water column ranged $0.3-36.1{\mu}g/l$, respectively. The density of clam in the study areas was mainly determined by the harvesting activities rather than the types of substrate. Relatively higher density of clam was observed in Oeri and Bangmiri where the clam seeds were sowed by the villagers. Condition factor of clams were found to be higher in Oeri where the substrate sorting was better with higher level of chlorophyll a. It was believed that sediment types and the level of available food the two governing factors controlling the density and growth of clam in Gyeonggi Bay.

• Proceedings of the Korean Society of Fisheries Technology Conference
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• 2003.05a
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• pp.388-388
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• 2003

Parasitic organisms in the Manila clam Ruditapes philippinarium were investigated from May 2001 to April 2002 from a population of clam inhabiting intertidal zone of Shi-Heung Ri on the west coast of Jeju. Perkinsus atlanticus and Cecaria tapidis were the two main parasites that occurred firequently among the clams. Occurrence of P atlanticus varied seasonally with lowest level in late September 2001 (6.0%) and highest infection level in March 2002 (86.0%). (omitted)

• Journal of Marine Life Science
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• v.3 no.2
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• pp.59-66
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• 2018

The assessment of level of health of the tidal flats can be evaluate by health of organisms inhabit the tidal flats. It is possible to evaluate the precise health level of organisms inhabit the tidal flats using analysis of expression of biomarker genes. The purpose of this research is to evaluate the health of the tidal flats on the west coast using biomarker genes such as heat shock protein 70 (Hsp70), heat shock protein 90 (Hsp90), glutathione S-transferases (GST) and thioredoxin (TRX). These genes are stress, immune, and antioxidant related genes that can be used to look at the health of an organism through gene expression. In this study, we collected manila clam (Ruditapes philippinarum) in 8 analysis areas on the west coast. Expression of the genes was analyzed by RT-qPCR method. Results showed that, the expression of Hsp70, Hsp90, GST and TRX genes were differentially expressed in the 8 analysis areas. In particular, the expression of Hsp90 and GST or the expression of Hsp70 and TRX were similar. This means that there is a substance that reacts specifically to each gene. Therefore, I think suggest that the based on the results of physicochemical analysis, it can be selected genes suitable for analysis. These results suggest that Hsp70, Hsp90, GST and TRX were played roles in biomarker for assessment of the health of tidal flats.

• The Korean Journal of Malacology
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• v.28 no.4
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• pp.305-312
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• 2012

Manila clam, Ruditapes philippinarum (SL; $32.74{\pm}2.18mm$, TW; $8.29{\pm}1.41g$, N; 450) were exposed to various concentrations of naphthalene for 20 weeks. Exposure concentrations of naphthalene established control, solvent control (ethanol), 30, 60, 90 and $120{\mu}g$ Nap $L^{-1}$ following results of 96h acute exposure. After exposure during 20 weeks, survival rate of the manila clam was lowed in 60, 90 and $120{\mu}g$ Nap $L^{-1}$ exposure group compared control group. Also, sex ratio of male was higher in $60{\mu}g$ Nap $L^{-1}$ exposure group (${\chi}^2=5.492$, P < 0.05) but lowed $90{\mu}g$ Nap $L^{-1}$ exposure group (${\chi}^2=4.214$, P < 0.05) and $120{\mu}g$ Nap $L^{-1}$ exposure group (${\chi}^2=30.118$, P < 0.05). Gonad development was delayed in female (> $60{\mu}g$ Nap $L^{-1}$) and male (> $30{\mu}g$ Nap $L^{-1}$). Intersex was 16.28% in female, 1.68% in male. In this result, naphthalene caused survival decrease, imbalance of sex ratio, delay of gonad development of the manila clam. Also, chronic exposure to naphthalene suggested abnormal effects in reproduction of the manila clam.

• The Korean Journal of Malacology
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• v.29 no.3
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• pp.207-216
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• 2013

Changes in density of manila clam, Ruditapes philippinarum to environment, catch and recruitment were studied in a few stations (Seonjae, Seongam, Hwangdo and Padori) in the West coast area of Korea from January, 2007 to December, 2009. Water temperature, salinity, dissolved oxygen and pH in the study stations were 0.8 to $31.2^{\circ}C$, 22.1 to 33.7 psu, 5.0 to 12.0 mg/L and 7.39 to 8.99, respectively. The concentrations of dissolved inorganic nitrogen, phosphate and silicate were 0.016 to 1.281 mg/L, 0.004 to 0.093 mg/L and 0.016 to 1.617 mg/L, respectively. Chlorophyll-a ranged from 0.2 to 12.1 ${\mu}g/L$, respectively. Substrata were mainly composed of muddy sand and very poorly sorted in Padori, muddy sand and well sorted in Seonjae and Hwangdo, gravelly muddy sand and poorly sorted in Seongam. Density was high in Seonjae and Seongam, but low in Hwangdo and Padori. In clam culture station, in which spat was naturally produced without sowing seedlings, the living density was decreased by increasing of death and a catch of shellfish, and recruitment was changed. Also, Density affected condition factor and shape of clam. Condition factor was the highest in Hwangdo, in which temperature in the winter and chlorophyll-a were high, and was the lowest in Padori. In the shape of clam, the shape in Seongam was a elongated form, but in Padori was a stunted form.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.34 no.3
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• pp.245-253
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• 2001

To investigate the effects of hydromechanical and textural characteristics of sediment deposits on the cultivation of Manila clam, Ruditapes philippinarum surface and sub-surface core sediments were collected seasonally in Gomso tidal flat. Grain size distribution were analyzed to investigate the annual variation of sediment texture. In winter unimodal distribution of grain size with the peak at $5\phi$ is dominant However, during the summer sediment texture become a little bit coarser and grain size distribution shows the peaks at $4\~5 \phi$. Optimum sediment texture for the cultivation of manila clam, R. philippinarum was found to be sandy silt in which mean Brain size was between 4 and $5 \phi$ with the sand content less than $50\%$ and clay content of $5\~10\%$. Mechanical and hydrological characteristics of sediment deposits were also studied in the laboratory and the results were applied to the numerical simulation for the behavior of surface sediment subjected to the cyclic loading from sea-water level change. Results of numerical simulation illustrate that the permeability of sediment had to be maintained in the range of $10^{-11}\sim10^{-12}m^2$ to ensure the proper sedimentological environment for the cultivation of manila clam, R. philippinarum. The deposits of virtually impermeable mud layer, with the threshold thickness of 4 cm, would be very hazardous to clam habitat.

• The Korean Journal of Malacology
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• v.21 no.1
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• pp.13-17
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• 2005

In this study, the influence of water temperature and salinity on sand ejection of Manila clams, Ruditapes philippinarum, was investigated. The result showed that, under different water temperature, the highest quantity of sand ejection was at $20^{\circ}C$, the value of which was 0.091 g, while the smallest one was only 0.058 g at 0$^{\circ}C$. The highest releasing rate, 95.79%, could be seen in $20^{\circ}C$ group, while $0^{\circ}C$ group was the lowest one, 85.29%. Under different salinity, 30 psu group had the highest value, 0.057 g, and 0 psu (freshwater) group was the lowest one, only 0.026 g. At the same time, the highest releasing rate appeared at 25 psu, which was 90%. 0 psu group was the lowest one in releasing rate, 60.47%. According to these results, we recommend that the clams should be placed into the clear seawater with about 25 psu of salinity at near $20^{\circ}C$ to let the clams perform the self-depuration. Better quality of clams containing less impurity in the aquaculture and commerce could be obtained from this pre-treatment.