• Asian-Australasian Journal of Animal Sciences
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• 제24권2호
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• pp.162-172
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• 2011

In this paper, simulation was used to determine accuracies of genomic breeding values for polygenic traits associated with many thousands of markers obtained from high density genome scans. The statistical approach was based upon stochastically simulating a pedigree with a specified base population and a specified set of population parameters including the effective and noneffective marker distances and generation time. For this population, marker and quantitative trait locus (QTL) genotypes were generated using either a single linkage group or multiple linkage group model. Single nucleotide polymorphism (SNP) was simulated for an entire bovine genome (except for the sex chromosome, n = 29) including linkage and recombination. Individuals drawn from the simulated population with specified marker and QTL genotypes were randomly mated to establish appropriate levels of linkage disequilibrium for ten generations. Phenotype and genomic SNP data sets were obtained from individuals starting after two generations. Genetic prediction was accomplished by statistically modeling the genomic relationship matrix and standard BLUP methods. The effect of the number of linkage groups was also investigated to determine its influence on the accuracy of breeding values for genomic selection. When using high density scan data (0.08 cM marker distance), accuracies of breeding values on juveniles were obtained of 0.60 and 0.82, for a low heritable trait (0.10) and high heritable trait (0.50), respectively, in the single linkage group model. Estimates of 0.38 and 0.60 were obtained for the same cases in the multiple linkage group models. Unexpectedly, use of BLUP regression methods across many chromosomes was found to give rise to reduced accuracy in breeding value determination. The reasons for this remain a target for further research, but the role of Mendelian sampling may play a fundamental role in producing this effect.

• 한국수정란이식학회지
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• 제23권2호
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• pp.119-125
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• 2008

A 3-month-old American Cocker spaniel was presented at the Veterinary Teaching Hospital, Chungbuk National University, for examination of urinary tract after dissection of vaginal mass at local clinic before 10 days. Clinical examination of the affected bitch revealed a normal sized vulva in a normal anatomical position with a grossly enlarged clitoris, which contained an os clitoris. On examinations of the genital gland, there were testis, epididymis, ductus deferens and uterus. The histology of both gonads was primarily testis. Seminiferous tubules were divided into many parts by fibrous connective tissue. A small number of spermatogonia was present, but large numbers of Leydig's cells were existed. A normal female karyotype (78, XX) was detected in metaphase spreads obtained from cultured peripheral lymphocytes. Y chromosome specific sequences were not detected in genomic DNA by PCR. After 27 months, the os clitoris was larger than 3-month-old dog and os bone was more calcified than young age. Combining the results of cytogenetic, molecular genetic and histological examinations, the dog was diagnosed as a female hermaphrodite with Sry-negative XX sex reversal.

• Reproductive and Developmental Biology
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• 제33권4호
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• pp.223-228
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• 2009

We attempted to control the maturation promoting factor (MPF) activity and investigated the subsequent reprogramming of bovine somatic cell nuclear transfer (SCNT) embryos. Serum-starved adult skin fibroblasts were fused to enucleated oocytes treated with 2.5 mM caffeine or $150\;{\mu}M$ roscovitine. The MPF activity, nuclear remodeling patterns, chromosome constitutions and development of SCNT embryos were evaluated. Methylated DNA of embryos was detected at various developmental stages. The MPF activity was increased by caffeine treatment or reduced by roscovitine treatment (p<0.05). Blastocyst development was higher in the caffeine-treated groups (27.6%) than that of the roscovitine-treated group (8.3%, p<0.05). There was no difference in the apoptotic cell index among the three groups. However, the mean cell number of blastocysts was increased in the caffeine-treated group (p<0.05). Higher methylation levels were observed in the Day 3 embryos of the roscovitine-treated group (50.8%), whereas lower methylation levels were noted at Day 5 in the caffeine-treated group (12.5%, p<0.05). These results reveal that the increase in MPF activity via a caffeine-treatment creates a more suitable condition for nuclear reprogramming after SCNT.

• 식물분류학회지
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• 제34권2호
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• pp.75-85
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• 2004

한국의 남부지방에서 발견된 부추속(부추과)의 새로운 두 분류군을 기재 및 도해하였다. 신종으로 처리된 돌부추(A. koreanum H.J. Choi et B.U. Oh)는 크기가 보다 크며, 별모양으로 완전히 벌어진 옅은 분홍색의 화피, 현저하게 돌출된 화사, 그리고 원추형의 주두 및 염색체 수 등의 특징으로 동북아시아에 널리 분포하는 돌부추절(sect. Reticulato-bulbosa)의 가는산부추(A. splendens)와 명확히 구분되었다. 또한 신변종으로 처리된 둥근산부추(A. thunbergii var. teretifolium H.J. Choi et B.U. Oh)는 원통형의 속이 비어있는 엽신 등의 특징으로 근연인 산부추(var. thunbergii) 및 세모산부추(var. deltoides)와 쉽게 구별되었다. 한국산 돌부추절의 두 종과 산부추(산부추절)의 세 변종에 대한 검색표를 제시하였다.

• 농업과학연구
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• 제45권2호
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• pp.238-247
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• 2018

The overall consumption of meat is increasing as the level of national income increases. The end weight is a trait closely associated with dressed meat. Genome-wide association study (GWAS) is an effective method of analyzing genetic variation and gene identification associated with a number of natural alternative traits because it can detect variations. So this paper did a GWAS analysis to identity the location on the genome related to the end weight in purebred landrace pigs and to explore the relevant candidate gene. This study identified a significant single nucleotide poly morphism (SNP) marker in chromosome 6 (ASGA0029422, $p=1.22{\times}10^{-6}$). Adhesion G protein-coupled receptor L2 (ADGRL2) was found to be the candidate gene at the identified SNP marker location. ADGRL2 genes have been found to be associated with cell development in relation to the external and internal environment of a cell. In addition, genotype and statistical analyses were done on nine variations on the exon of ADGRL2. The results show that the SNP marker (ASGA0029422, $p=1.32{\times}10^{-6}$) was significant, but the significance of the nine variations on the ADGRL2 exon was not verified. However, by performing further experiments and functional studies on other SNPs showing possible genetic ADGRL-Exon mutations, objects with high associations of high-end weights can be selected.

• 한국동물학회지
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• 제33권1호
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• pp.45-52
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• 1990

성장중인 포유동물의 난자에 존재하는 성숙억제요인이 배아의 난하레 미치는 효과를 세포융합방법을 사용하여 조사하였다. 생쥐에서 성장중인 난자와 간기에 있는 2세포기 할구와 1 : 1로 융합하여 배양했을 때 60% 이상의 융합체들이 두개의 핵을 간직하고 있었으며 4세포기의 할구와 융합했을 때에는 90% 이상이 두개으 핵을 간직하고 있었다. 같은 조건으로 배양한 융합되지 않은 할구들이나 단독으로 배양한 할구들은 한 주기의 난할을 일으키었다. 이에대해 이미 유사분열기로 들어간 후기 2세포기 할구와 성장중인 난자와 융합을 했을 때에는 오히려 난자의 핵붕괴와 함께 염색체의 응축이 일어났다. 쥐의 성장중인 난자와 간기에 있는 생쥐 2세포기 할구와 1 : 1로 융합했을 때에도 역시 거의 모든 융합체들이 핵을 간직하고 있어서 분열이 정지되어 있었다. 이러한 결과는 생쥐나 쥐의 성장중인 난자에는 배아의 난할을 억제하는 성질이 있음을 보여주는 것이며 이미 분열기로 들어간 배아의 세포질에는 효과를 나타내지 못한다는 것을 보여주고 있다.

• Journal of Genetic Medicine
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• 제8권1호
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• pp.62-66
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• 2011

14q32.33을 포함한 14번 염색체 장완 결실은 드문 질환이다. 14번 염색체의 말단 결실은 여러 임상증상을 공통적으로 보일 수 있으나 결실 절단부 (breakpoint)에 따라 표현형이 다양하게 발생할 수 있다. 저자들은 경련을 동반한 5세 여아에서 array comparative genomic hybridization (array-CGH)와 fluorescence in situ hybridization (FISH) 방법을 이용하여 이전 보고에 비해 가장 작은 14q32.33부위의 0.33 Mb 크기의 말단 결실과 심하지 않은 표현형을 보이는 1례를 경험 하였기에 문헌고찰과 함께 보고하는 바이다.

• KSBB Journal
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• 제5권2호
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• pp.175-182
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• 1990

N. tabacum $NR^-/SR^+$과 N. glutinosa의 엽육세포로부터 원형질체를 분리하여 전기적으로 융합 및 배양하였으며 AAPI 9M 배지에서 이 원형질체의 plating effici-ency는 30~35%였다. 분열 중인 소형 세포괴는 1.2mg / ml의 streptomycin이 포함된 $MSNO_3$배지에 치상하여 계속 분열을 유지하는 녹색 칼루스 계통을 선발하였다. 이 녹색 칼루스 계통에서 유래된 4계통의 식물들은 꽃의 형태, 화관의 길이와 염신의 모양에서 양쪽 모식물체의 중간형을 보였고, 엽조직의 peroxidase와 esterase의 isozyme분석에서도 양쪽 모식물체의 특성을 부분적으로 함께 나타냈으며 또한 결실되거나 새로운 isozyme band도 보였다. 이 융합체 추정계통들의 염색체 분석에서 L22계통에서 2n=66, L44계통에서 2n=54개가 조사되어 N.tabacum(2n=48)과 N.glutinosa(2n=24)의 융합체는 염색체의 부분적 감소현상을 보였다.

• Genomics & Informatics
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• 제3권4호
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• pp.149-153
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• 2005

Asthma is an inflammatory airways disease characterized by bronchial hyperresponsiveness and airways obstruction, which results from a complex interaction of genetic and environmental factors. Interleukin (IL)-13 and IL-4 are important in IgE synthesis and allergic inflammation, therefore genes encoding IL-13 and IL-4 are candidates for predisposition to asthma. In the present study, we screened single-nucleotide polymorphisms (SNPs) in IL-13 and IL-4 and examined whether they are risk factors for asthma. We resequenced all exons and the promoter region in 12 asthma patients and 12 normal controls, and identified 18 SNPs including 2 novel SNPs. The linkage disequilibrium(LD) pattern was evaluated with 16 common SNPs, and haplotypes were also estimated within the block. Although IL-13 and IL-4 are localized within 27 kb on chromosome 5q31 and share many biological profiles, this region was partitioned into 2 blocks. One SNP and three SNPs were determined as haplotype-taggingSNPs (htSNPs) within IL-13 and IL-4 haplotype-block, respectively. No significant associations were observed between any of the SNPs or haplotypes and development of asthma in small number of Korean subjects. However, the genetic variants of IL-13 and IL-4 would provide valuable strategies for the genotyping studies in large population.

• Journal of Electrical Engineering and Technology
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• 제4권1호
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• pp.55-65
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• 2009

Due to the rapid increase of electricity demand, consideration of environmental constraints in optimal power flow (OPF) problems is increasingly important. In Algeria, up to 90% of electricity is produced by thermal generators (vapor, gas). In order to keep the emission of gaseous pollutants like sulfur dioxide (SO2) and Nitrogen (NO2) under the admissible ecological limits, many conventional and global optimization methods have been proposed to study the trade-off relation between fuel cost and emissions. This paper presents an efficient decomposed Parallel GA to solve the multi-objective environmental/economic dispatch problem. At the decomposed stage the length of the original chromosome is reduced successively and adapted to the topology of the new partition. Two subproblems are proposed: the first subproblem is related to the active power planning to minimize the total fuel cost, and the second subproblem is a reactive power planning design based in practical rules to make fine corrections to the voltage deviation and reactive power violation using a specified number of shunt dynamic compensators named Static Var Compensators (SVC). To validate the robustness of the proposed approach, the algorithm proposed was tested on the Algerian 59-bus network test and compared with conventional methods and with global optimization methods (GA, FGA, and ACO). The results show that the approach proposed can converge to the near solution and obtain a competitive solution at a critical situation and within a reasonable time.