• 한국미생물·생명공학회지
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• 제51권3호
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• pp.314-316
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• 2023

Colistin is one of the last-resort antibiotics used to treat multidrug-resistant Gram-negative bacterial infection in both human and animals. Here, we report the complete genome sequence of colistin-resistant Salmonella enterica serotype Enteritidis strain CRSE-01 isolated from poultry carcass in South Korea. The assembled genome consists of a 4,783,907-bp circular chromosome containing numerous antimicrobial resistance genes and a 59,372-bp plasmid.

• 한국미생물·생명공학회지
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• 제51권4호
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• pp.545-547
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• 2023

Staphylococcus epidermidis is a normal flora of human skin and is occasionally associated with pathogenic infections. We report the complete genome sequence of methicillin-resistant Staphylococcus epidermidis strain Z0118SE0272 isolated from the residential environment sharing by a companion dog and dwellers. Resistance to cefoxitin was observed in the strain, whereas it was susceptible to erythromycin, clindamycin, quinupristin-dalfopristin, trimethoprim-sulfamethoxazole, mupirocin, vancomycin, teicoplanin, linezolid, and tigecycline. The strain Z0118SE0272 identified as sequence type 130 possessed the mecA gene responsible for methicillin resistance, which composed the new type of staphylococcal cassette chromosome mec elements lacking mecRI.

• Journal of Dairy Science and Biotechnology
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• 제42권1호
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• pp.18-22
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• 2024

In this study, we performed whole-genome sequencing of Levilactobacillus brevis KL251 (KL251) isolated from kimchi. The KL251 genome, characterized by a circular chromosome spanning 2,345,062 base pairs with a GC content of 45.78%, was analyzed. KL251 contains 2,275 coding DNA sequences (CDSs), 56 transfer RNAs (tRNAs), and 4 ribosomal RNAs (rRNAs). Genes associated with gamma-aminobutyric acid (GABA) production and CRISPR-Cas systems were identified and could potentially be used for GABA synthesis and defense against foreign DNA. Additionally, the presence of functional genes involved in isoprenoid biosynthesis, glutathione generation, and redox sensing showed that cellular metabolism and stress responses were important characteristics of this genome. These genomic findings suggest that the KL251 strain could potentially have several applications, including food fermentation, probiotics, dairy product starters, and the development of health-enhancing products.

• 한국미생물·생명공학회지
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• 제52권3호
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• pp.325-327
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• 2024

We report the complete genome sequence of an extended-spectrum beta-lactamase-producing Salmonella enterica subsp. enterica Serovar Infantis strain IJCS5-22 that harbors bla_CTX-M-65, which was isolated from whole chicken meat purchased from a retail market in South Korea. The assembled IJCS5-22 genome comprised a 4,727,133 bp circular chromosome and a 318,349 bp plasmid that encoded several antimicrobial resistance genes, including bla_CTX-M-65, with 52.27% and 50.39% GC contents, respectively.

• 농약과학회지
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• 제17권4호
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• pp.335-342
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• 2013

고삼추출물은 한국에서 유기농업자재로 등록되어 있어 친환경농산물 재배시에 널리 사용되고 있다. 고삼추출물의 유효성분인 matrine은 쥐의 신경계에 독성을 나타낸다고 보고된 바 있으나 다른 안전성 확인 연구는 미비한 상황이다. 따라서 본 연구는 고삼추출물 2종을 이용하여 항돌연변이원성 시험과 유전독성시험 2종(복귀돌연변이 및 염색체이상 시험)을 실시하였다. 항돌연변이원성 시험은 복귀돌연변이 시험방법을 이용하여 실시하였으며, 복귀돌연변이 시험으로는 Salmonella Typhimurium TA98, TA1535와 TA1537을 이용하여, S-9 mix를 사용한 대사활성계 처리군과 PBS를 사용한 대사활성계 미처리군으로 구분하여 진행하였다. 염색체이상 시험은 Chinese hamster lung cells을 이용하여 고삼추출물 시료에 대사활성계 처리군은 6시간 노출시켰고, 대사활성계 미처리군은 각각 6시간과 24시간 노출시켜 시험하였다. 항돌연변이 시험 결과, 4-NQO에 의해 유도된 돌연변이 집락수는 고삼추출물 시료 처리에 의해 감소되어 항돌연변이 효과가 있는 것으로 나타났다. 시험결과, 복귀돌연변이 시험에서는 고삼추출물의 모든 시험 농도군에서 대사활성계의 처리 유무와 관계없이 독성이 나타나지 않았다. 반면, 염색체이상시험 결과 고삼추출물 시료 1종에서 대사활성계 미처리군에서는 250 ${\mu}g/mL$, 대사활성 처리군에서는 500 ${\mu}g/mL$ 의 농도에서 의양성이 나타났고 이 이하의 농도에서는 모두 음성으로 나타났으며, 나머지 시료 1종에서는 모든 처리농도군에서 음성으로 판정되었다. 고삼추출물의 유전독성 가능성을 더 정밀히 평가하기 위해서는 향후 battery system에 포함된 다른 in vivo 유전독성 시험을 추가로 시행하여 유전독성 여부를 최종 확인할 필요가 있다고 판단된다.

• Journal of Genetic Medicine
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• 제8권2호
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• pp.119-124
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• 2011

목적: 표지염색체(supernumerary marker chromosome, SMC)는 유래한 염색체에 따라서 임상 증상이 다양하다. 본 연구는 염색체 마이크로어레이를 이용하여 SMC의 기원을 밝히고 각 증례마다 분자세포유전학적 특성과 임상 표현형을 분석하고자 하였다. 대상 및 방법: 염색체 검사에서 SMC가 검출된 환자들 중에서 15번 염색체 유래를 제외한 4명의 환자에서 CGH 기법의 올리고 뉴클레오티드 염색체 마이크로어레이를 시행하였다. 결과: 3명의 환자에서 유래된 염색체 부위를 확인할 수 있었다. 증례1은 1q21.1-q23.3에서 16.1 Mb의 SMC를 가졌고, 증례2는 19p13.11-q13.12에서 21 Mb, 증례3은 22q11.1-q11.21과 22q11.22-q11.23의 두 구간에서 각각 2.5Mb와 2.0Mb로 재배열된 4.5 Mb의 SMC를 나타내었다. 결론: 증례1은 1q21.1 중복증후군을 포함하여 광범위한 임상표 현형을 나타내었다. 증례2는 아스퍼거 증후군과 유사한 정신행동 이상 소견은 19p12-q13.11, 청력장애와 사시는 19p13.11, 그 외 증상은 19q13.12의 유전자와 연관 가능성이 높다. 증례３은 묘안 증후군 type I 및 22q11.2 미세중복증후군과 비교했을 때 항문폐쇄는 22q11.1-q11.21, 그 외 증상들은 22q11.22-q11.23과 연관성을 시사하였다. 고해상도 염색체 마이크로어레이 분석은 SMC의 유래를 확인할 수 있고 유전형-표현형 상관성을 이해함으로써 유전상담에 도움이 된다.

• 제어로봇시스템학회:학술대회논문집
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• 제어로봇시스템학회 2003년도 ICCAS
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• pp.2226-2229
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• 2003

A new method is presented to construct a classifier. This was accomplished by combining a generalized regression neural network (GRNN) and a genetic algorithm (GA). The classifier constructed in this way is referred to as a GA-GRNN. The GA played a role of controlling training factors simultaneously. In GA optimization, neuron spreads were represented in a chromosome. The proposed optimization method was applied to a data set, consisted of 4 different promoter sequences. The training and test data were composed of 115 and 58 sequence patterns, respectively. The range of neuron spreads was experimentally varied from 0.4 to 1.4 with an increment of 0.1. The GA-GRNN was compared to a conventional GRNN. The classifier performance was investigated in terms of the classification sensitivity and prediction accuracy. The GA-GRNN significantly improved the total classification sensitivity compared to the conventional GRNN. Also, the GA-GRNN demonstrated an improvement of about 10.1% in the total prediction accuracy. As a result, the proposed GA-GRNN illustrated improved classification sensitivity and prediction accuracy over the conventional GRNN.

• Journal of Microbiology and Biotechnology
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• 제20권4호
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• pp.775-778
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• 2010

A total of 2,858 meat samples collected during 2003-2008 in Korea were investigated, and methicillin-resistant Staphylococcus aureus (MRSA) isolates were isolated from 1.0% (9/890) of beef, 0.3% (4/1,055) of pork, and 0.3% (3/913) of chicken meat samples, respectively. MRSA isolates showed the two sequence types (STs), ST72 from beef and pork and ST692 from chicken meat. MRSA isolates from beef and pork were Panton-Valentine leukocidin-negative, staphylococcal cassette chromosome mec type IVa strain with ST72, which is the most prevalent type of communityacquired MRSA in Korea. An identical pulse-field gel electrophoresis pattern was detected among 10 of 16 MRSA isolates: 9 strains from beef (n=5) and pork (n=4) in 2008, and one strain from beef in 2005.

• 대한임상검사과학회지
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• 제47권1호
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• pp.51-58
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• 2015

Ethanol has long been implicated in triggering apoptotic neurodegeneration. Alcohol also may indirectly harm the fetus by imparing the mother's physiology. We examined the effects of ethanol on immature brain of mice. Three-weeks-old female ICR strain mice daily intraperitoneally injected with ethanol at the concentration of 4 and 20% in saline for 0, 6, and 24 hours and 1 and 4 weeks. The mice were weighted and sacrificed, and the brains were ectomized for the present histological, immunohistochemical and TUNEL assays. Based on the histologic hematoxylin and eosin stain, immunohistochemical expression of glutamate receptor protein and neuronal cell adhesion molecule (NCAM) were evaluated. The cerebral cortex of the ethanol-treated group showed few typical symptoms of apoptosis such as chromosome condensation and disintegration of the cell bodies. TUNEL staining revealed DNA fragmentation in the 6 and 24 hours. This results demonstrated that acute ethanol administration causes neuronal cell death. I found that either glutamate receptor inhibition or activation could induce cerebellar degeneration as ethanol effect. Neuronal death also can be induced by excess activity of certain neurotransmitter, including glutamate. Neurons must establish cell-to-cell contact during growth and development in order to survive, migrate to their final destination, and develop appropriate connections with neighboring cell. Purkinje cell in cerebellar are especially vulnerable to the cell death and degeneration. After ethanol treatment in cerebellar, NCAM had decreased by 4 weeks. This result suggest that apoptosis seems to be involved in the slow elimination of neuron and cerebellar degeneration.

• BMB Reports
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• 제29권4호
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• pp.308-313
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• 1996

An 1.4 kb of the fad3 cDNA encoding microsomal linoleic acid desaturase catalyzing the conversion of linoleic acid (18:2, ${\omega}-6$) to linolenic acid (18:2, ${\omega}-3$) was introduced into tobacco plants by the Agrobacterium-mediated plant transformation, Among the transgenic tobacco plants conferring kanamycin resistance, five transformants showing increment in unsaturated fatty acid contents were selected and further analyzed for the transgenecity, In genomic Southern blot analyses, copy numbers of the integrated fad3 DNA in chromosomal DNA of the five transgenic tobacco plants were varied among the transgenic lines. By Northern blot analyses, the abundancy of the fad3 mRNA transcript directed by Cauliflower Mosaic Virus 35S promoter was consistent with the relative copy number of the fad3 DNA integrated in the chromosome of transgenic tobacco plants. When compared with the wild type, accumulation of linolenic acid in transgenic tobacco roots was elevated 3.7- to 4.7-fold showing a corresponding decrease in the linoleic acid contents; however, slight increments for linolenic acid were noticed in transgenic leaf tissues. These results indicated that the elevated level of fad3 expression is achieved in transgenic tobacco plants.