• Title/Summary/Keyword: CO1 (cytochrome C oxidase 1)

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First report of the branchiobdellidan Holtodrilus truncatus (Annelida: Clitellata) found on the freshwater atyid shrimp Neocaridina sp. from Korea

  • Ahn, Dong-Ha;Min, Gi-Sik
    • Journal of Species Research
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    • v.5 no.3
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    • pp.459-462
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    • 2016
  • The branchiobdellidan species Holtodrilus truncatus (Liang, 1963) is reported for the first time in Korea. The genus Holtodrilus Gelder and Brinkhurst, 1990 is monotypic within the family Xironodrilidae, and the genus and family of this species are also new to the Korean fauna. The branchiobdellidan specimens were collected from the exoskeletons of the freshwater atyid shrimp, Neocaridina sp., sampled from the 'Andeok Valley', Jeju-do Province, South Korea. Holtodrilus truncatus is characterized by its terete body form, 7/7 dental formula (with a large medial tooth and three pairs of smaller lateral teeth), and no trunk appendages. In addition, we determined a partial sequence of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene as a DNA barcode marker for H. truncatus. The present study is the first record of the branchiobdellidan occurrence on a non-crayfish host (shrimp) in Korea. To date, seven species (four genera in three families) of branchiobdellidans have been reported in the Korean fauna.

New record of limnoriid and asellote species(Crustacea: Malacostraca: Isopoda) from South Korea

  • Song, Ji-Hun;Min, Gi-Sik
    • Journal of Species Research
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    • v.6 no.3
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    • pp.237-240
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    • 2017
  • During a scientific survey of Korean isopod fauna, we discovered two marine isopods, Limnoria segnoides Menzies, 1957 and Munna japonica Shimomura and Mawatari, 2001, which are new records to South Korea. Limnoria segnoides and M. japonica were collected by SCUBA diving from the subtidal zone of Jeju Island and Yangyang-gun in South Korea, respectively. In this paper, we provide diagnosis and illustrations of the two isopods. Additionally, we provide GenBank accession numbers of partial sequences of mitochondrial cytochrome c oxidase subunit 1 (CO1) of two species.

DNA Barcoding of Boccardiella hamata (Annelida: Polychaeta: Spionidae) in South Korea

  • Lee, Geon Hyeok;Yoon, Seong Myeong;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.3
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    • pp.268-273
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    • 2020
  • A spionid polychaete, Boccardiella hamata (Webster, 1879) has been found from mud in crevices between the shells of oysters and adherent substrates in South Korea. The sequences of mitochondrial DNA (mtDNA) cytochrome c oxidase subunit 1 (CO1), 16S ribosomal DNA (16S), and the nuclear 18S ribosomal DNA (18S) from Korean individuals of Boccardiella hamata were determined in the present study. The molecular analysis based on the 18S rRNA gene sequences showed clear separation among the spionid polychaete species, and the sequences of Korean and Japanese individuals are completely identical. The morphological diagnosis and photographs of B. hamata are also provided.

Molecular Biological Species Identification of Imported Groupers(Epinephelus moara ♀×E. lanceolatus ♂) (수입산 바리과(Family Serranidae) 잡종 어류(Epinephelus moara ♀×E. lanceolatus ♂)의 분자생물학적 판별)

  • Kim, Yong Hwi;Park, Jong Yeon;Kim, Jae Hoon;Bang, In-Chul
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.53 no.4
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    • pp.566-571
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    • 2020
  • To classify a presumed hybrid of imported grouper species acquired from the National Fishery Products Quality Management Service, maternal and paternal lines were identified based on partial sequencing of mitochondrial cytochrome c oxidase 1 (co1) and nuclear recombination activation gene 1 (rag1) genes. The matrilineal species was identified as Epinephleus moara by a partial (760 bp) co1 sequence. Ambiguous sequences with base pairs belonging to E. moara or E. lanceolatus were found in a total of 15 different base pairs in the partial 1,159 bp of the rag1 gene, and the patrilineal species was found to be E. lanceolatus. Therefore, all of the groupers examined in the study were identified to be hybrids of E. moara and E. lanceolatus. In addition, a fast and convenient method using random amplification of polymorphic DNA (RAPD) was established for hybrid discrimination. Hybrids between E. moara ♀ and E. lanceolatus ♂ were identified through specific bands of 387 bp and 433 bp in PRIMER 6.

First Report of Rust Disease Caused by Puccinia phragmitis on Rumex japonicus in Korea (Puccinia phragmitis에 의한 참소리쟁이 잎녹병 발생 보고)

  • Lee, Seung-Yeol;Park, Ji-Won;Kang, In-Kyu;Jung, Hee-Young
    • Research in Plant Disease
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    • v.26 no.1
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    • pp.53-56
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    • 2020
  • Red spots symptoms were observed on the leaves of Rumex japonicus Houtt. in Goesan, Korea, in May 2019. Diseased leaf showing red spot and white-colored sori were found behind of diseased leaves. Aeciospores were confirmed and observed using a stereomicroscope, light microscope, and scanning electron microscope. They were globose or ovoid and measured 19.0-24.4×19.0-24.5 ㎛, with verrucae ornamentation. For the phylogenetic analysis, partial of large subunit rDNA region and cytochrome c oxidase subunit III were sequenced. As a result, the isolated fungus species showed high similarities with Puccinia prizeliana. Based on the previous report, morphological characters, phylogenetic analysis, it was confirmed as Puccinia phragmitis which have not been reported in Korea, and we firstly report this fungal agent on R. japonicus as P. phragmitis in Korea.

The First Record of the Marphysa victori (Polychaeta, Eunicida, Eunicidae) from Korea, with DNA Barcode Data

  • Kim, Hana;Kim, Keun-Yong;Phoo, War War;Kim, Chang-Hoon
    • Animal Systematics, Evolution and Diversity
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    • v.37 no.1
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    • pp.1-8
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    • 2021
  • A eunicid polychaete, Marphysa victori Lavesque, Daffe, Bonifácio & Hutchings, 2017 is described for the first time from the intertidal zones of the Korean coasts. It is characterized by having three types of pectinate chaetae (INS, isodont-narrow-slender; AWS, anodont-wide-slender; and AWT, anodont-wide-thick), appearance of pectinate chaetae from chaetiger 2, the chaetae consisted of pectinate and compound spinigers, and pygidium with one pair of pygidial cirri. In genetic analysis based on cytochrome c oxidase subunit I (COI), intra-specific genetic distance between the specimens of M. victori from its type locality, France and Korea are in the range of 0.000-0.013. This paper includes the morphological description and photographs of M. victori new to Korean fauna, with partial sequences of the mitochondrial COI as DNA barcode data on this species.

A New Record of Prionospio depauperata (Annelida: Polychaeta: Spionidae) with DNA Barcoding Data of Four Prionospio Species in South Korea

  • Lee, Geon Hyeok;Yoon, Seong Myeong;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.36 no.4
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    • pp.382-386
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    • 2020
  • In this study, Prionospio depauperata Imajima, 1990 is newly reported in Korean fauna. Prionospio depauperata can be distinguished from other relatives by the four pairs of branchiae which are pinnate on chaetigers 2 and 5, and apinnate on chaetigers 3 and 4; caruncle extending to the end of chaetiger 2; and moderate dorsal crest present on chaetigers 7-13. The morphological diagnosis of P. depauperata are provided with the photographs of four Prionospio species. The mitochondrial cytochrome c oxidase subunit 1 (CO1), 16S ribosomal DNA (16S rDNA), and the nuclear 18S ribosomal DNA (18S rDNA) sequences of four Prionospio species from Korean waters, P. depauperata Imajima, 1990, P. japonica Okuda, 1935, P. krusadensis Fauvel, 1929, and P. membranacea Imajima, 1990, were determined for the first time. The inter-specific genetic distances among the congeners of four Prionospio species were 22.3-29.6% in CO1, 10.5-25.0% in 16S rDNA, and 0.3-3.6% in 18S rDNA.

Control Efficacy of Controlled Atmosphere and Temperature Treatment System Against the Hawthorn Spider Mite, Tetranychus viennensis (환경조절열처리 기술을 이용한 벚나무응애(Tetranychus viennensis) 살비 효과)

  • Son, Ye-Rim;Lee, Jong-Ho;Kim, Yong-Gyun
    • Korean journal of applied entomology
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    • v.51 no.2
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    • pp.131-140
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    • 2012
  • The hawthorn spider mite, Tetranychus viennensis, is a pest of apples and a quarantine pest from some countries that import apples from Korea. A controlled atmosphere and temperature treatment system (CATTS) was developed as an alternative disinfestation method to methyl bromide fumigation treatment, and has been applied to control various insects and other arthropod pests on fruits. We applied CATTS to disinfect T. viennensis under conditions that were previously developed to control the peach fruit moth, Carposina sasakii. First, T. viennensis was sampled from Japanese apricot, Prunus mume, and identified by its morphological characters. In addition, both cytochrome oxidase I (COI) and internal transcribed spacer (ITS) sequences supported the morphological identification. Second, the heat-tolerant developmental stage was determined in T. viennensis. When a $46^{\circ}C$ heat treatment was applied to egg, nymph, and adult stages of T. viennensis, adults were the most tolerant stage. Third, when heat temperature was used along with 1% $O_2$ and 15% $CO_2$, the mites showed a significant increase in susceptibility to the heat treatment. Finally, CATTS at $46^{\circ}C$ with 15% $CO_2$ and 1% $O_2$ for 30 min resulted in 100% mortality of all T. viennensis development stages. These results indicated that CATTS isapplicable to disinfest T. viennensis in post-harvest apples.

DNA Barcoding of Allobathynella yecheonensis (Bathynellacea: Parabathynellidae) from Interstitial Groundwater, South Korea

  • Ji, Su-Jung;Min, Gi-Sik
    • Animal Systematics, Evolution and Diversity
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    • v.38 no.4
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    • pp.283-286
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    • 2022
  • Bathynellacea is a stygobitic group that is commonly associated with subterranean habitats. Allobathynella Morimoto and Miura, 1957, which is a genus of parabathynellid Bathynellacea, has the widest range of distribution and is rich in species from the Korean peninsula among Korean Bathynellacea genera. The material of Allobathynella yecheonensis Park and Cho, 2016, was found in the type locality of interstitial groundwater in the Nakdonggang River in South Korea. In this study, we determined the sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) and nuclear 18S ribosomal DNA of A. yecheonensis and compared them with those of A. hongcheonensis, A. wonjuensis, and A. danyangensis. In addition, we provided photographs of A. yecheonensis and diagnosis including a note on morphological observations.

DNA Barcoding of Allobathynella cheongdoensis and Hangangbathynella taechooni of Family Parabathynellidae (Crustacea, Bathynellacea)

  • Su-Jung Ji;Gi-Sik Min
    • Animal Systematics, Evolution and Diversity
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    • v.39 no.3
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    • pp.123-126
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    • 2023
  • Members of Allobathynella Morimoto and Miura, 1957 and Hangangbathynella Park and Cho, 2013 belong to the family Parabathynellidae Noodt, 1965 exclusively inhabit subterranean environments including caves, springs, and interstitial groundwater. Among them, two parabathynellid species, Allobathynella cheongdoensis Park and Cho, 2016 and Hangangbathynella taechooni Park and Cho, 2013, have been reported in the hyporheic zones of the Nakdonggang and Namhangang Rivers in South Korea, respectively. To evaluate gene markers as diagnostic characters, we determined mitochondrial cytochrome c oxidase subunit 1 (CO1) and nuclear 18S rDNA from the topotypes of two Korean parabathynellid species, and then analyzed the genetic divergence among the two parabathynellids and their congeners. Additionally, we provided their habitus photographs and a brief discussion of the usefulness of the two marker regions for both genera as DNA barcodes.