• Animal Systematics, Evolution and Diversity
• /
• 제35권1호
• /
• pp.30-32
• /
• 2019

The brachyuran crab Bythograeidae Williams, 1980 is common in hydrothermal vent fields worldwide and has recorded to sixteen species of six genera. In this study, we firstly determined the cytochrome c oxidase subunit 1 (CO1) DNA barcodes for the fifth species of Austinograea, A. hourdezi, from hydrothermal vent regions of the North Fiji Basin in southwestern Pacific Ocean. All CO1 DNA barcodes of A. hourdezi were identical. The interspecies variations of three bythograeid genera were 10.9-13.3% for Austinograea, 6.6-15.7% for Bythograea, and 9.7% for Gandalfus. These results would be helpful to understand taxonomy of brachyuran crabs living in hydrothermal vent fields using CO1 DNA barcodes.

• Journal of Species Research
• /
• 제5권3호
• /
• pp.309-312
• /
• 2016

Cleantioides rotundata (Kussakin, 1982) is reported for the first time in South Korea. Specimens of C. rotundata were collected with a small hand net from the intertidal zone of Opo-ri, Yeongdeok-gun in South Korea. This species makes tubes using seagrass debris at our sampling location and distinguished by the following characteristics: pleotelson long, length almost 1.6 times as long as width; dorsum of distal one third with deeply bilobed depression on plane. In this paper, we provide descriptions of diagnostic characteristics and illustrations of morphology of C. rotundata. Additionally, a key to the Korean species of the genus Cleantioides is provided and the partial sequences of the mitochondrial cytochrome c oxidase subunit 1 (CO1) are provided as molecular characteristics.

• Animal Systematics, Evolution and Diversity
• /
• 제35권1호
• /
• pp.37-39
• /
• 2019

We determined the cytochrome c oxidase subunit 1 (CO1) sequences of Nebalia koreana Song, Moreira & Min, 2012 (Leptostraca) collected from five locations in South Korea, and this represents the first genetic data of this species. The maximum intra-species variation was 1.2% within Nebalia hessleri Martin, Vetter & Cash-Clark, 1996, while inter-species variation ranged from 9.0% (N. hessleri and Nebalia gerkenae Haney & Martin, 2000) to 34.8% (N. hessleri and Nebalia pseudotroncosoi Song, Moreira & Min, 2013). This result is well agreed with the interspecific relationships among Nebalia species based on morphological characteristics. In conclusion, this study showed the usefulness of CO1 sequences as a DNA barcode within the genus Nebalia Leach, 1814.

• Animal Systematics, Evolution and Diversity
• /
• 제24권1호
• /
• pp.9-16
• /
• 2008

Cerapus longicervicum, a new species of ischyrocerid amphipods, was isolated from the vicinal sea of Deokjeokdo-Island, Incheon (South Korea). This species is characterized by a narrower coxal plate width of gnathopod 1 in male, which is 0.39 times as broad as pereonite 1, and antenna 2, which is longer than antenna 1. This paper also provides the partial sequence of the mitochondrial cytochrome c oxidase subunit 1 (CO1) of the new species, which was obtained from a specimen that was preserved in 4% formalin solution.

• Parasites, Hosts and Diseases
• /
• 제53권6호
• /
• pp.731-735
• /
• 2015

A 2-year-old female donkey (Equus asinus) was euthanized in the Pathology Department of Firat University, Elazig, Turkey. Necropsy disclosed the presence of 7 hydatid cysts distributed throughout the lung parenchyma. One of those cysts represented the parasite material of the present study and was molecularly identified through sequencing of a fragment of cytochrome c oxidase subunit 1 (CO1) and nicotinamide adenine dinucleotide dehydrogenase subunit 1 (NADH1) gene, as Echinococcus equinus. The generated CO1 sequence supports the presence of the dominant haplotype as has been described in Europe and Africa. The NADH1 sequence was found similar to sequences reported in equids in Egypt and the United Kingdom. The molecular identification of E. equinus in a donkey is being reported for the first time in Turkey.

• 한국응용곤충학회지
• /
• 제61권4호
• /
• pp.641-649
• /
• 2022

미토콘드리아 시토크롬 c 산화효소 1 (COX1) 유전자 염기서열(658 bp)을 사용하여, 콩 포장에서 채집된 어리팥나방(Matsumuraeses falcana)과 팥나방(Matsumuraeses phaseoli)의 종을 실험실 집단의 종들과 비교하여 동정하였다. COX1 염기서열 분석에서, 어리팥나방 47개체로부터 10개의 하플로타입이 발견되었고, 종내 유전적 거리는 0.15~0.46%이었다. 이중 하프로타입 A형이 약 70%로 우점형이었다. 팥나방의 30개체로부터는 모두 동일한 하나의 서열만이 확인되었고, 어리팥나방과의 종간 유전적 거리는 4.11~4.61%이었다. 두 종의 COX1 염기서열을 번역한 아미노산 서열은 모두 동일하여 동의적 염기서열 변이(동의치환, 同義置換, synonymous substitution)를 확인할 수 있었다. 포장 조사에서 두 종의 유충이 콩의 잎과 꼬투리를 가해하였고, 한 포장에서 동시에 발생하였다. 전체 포장에서 어리팥나방의 평균 밀도는 팥나방보다 약 1.5배 높았다. 이 결과는 콩이 두 종의 동일 기주임을 명백하게 제시하였다. 별도로 이 속의 유충 기생파리로서 Elodia flavipalpis (파리목: 기생파리과)가 발견되었고, COX1 서열로 동정되었다.

• Parasites, Hosts and Diseases
• /
• 제55권1호
• /
• pp.31-37
• /
• 2017

This study aimed to investigate the morphology and reconstruct the phylogenetic relationships of Centrocestus formosanus originating from 5 species of freshwater fish, i.e., Esomus metallicus, Puntius brevis, Anabas testudineus, Parambassis siamensis, and Carassius auratus, in Chiang Mai province, Thailand. Sequence-related amplified polymorphism (SRAP) and phylogeny based on internal transcribed spacer 2 (ITS2) and mitochondrial cytochrome c oxidase subunit 1 (CO1) were performed. The results showed similar morphologies of adult C. formosanus from day 5 after infection in chicks. C. formosanus originated from 4 species of freshwater fish had the same number of circumoral spines on the oral sucker, except for those from C. auratus which revealed 34 circumoral spines. The phylogenetic tree obtained from SRAP profile and the combination of ITS2 and CO1 sequence showed similar results that were correlated with the number of circumoral spines in adult worms. Genetic variability of C. formosanus also occurred in different species of freshwater fish hosts. However, more details of adult worm morphologies and more sensitive genetic markers are needed to confirm the species validity of C. formosanus with 34 circumoral spines originating from C. auratus in the future.

• Molecules and Cells
• /
• 제23권2호
• /
• pp.220-227
• /
• 2007

The development of suitable genetic markers would be useful for defining species and delineating the species boundaries of morphologically indistinguishable sponges. In this study, genetic variation in the sequences of nuclear rDNA and the mitochondrial cytochrome c oxidase subunit 1 and 3 (CO1 and CO3) regions were compared in morphologically indistinguishable Korean Halichondriidae sponges in order to determine the most suitable species-specific molecular marker region. The maximal congeneric nucleotide divergences of Halichondriidae sponges in CO1 and CO3 are similar to those found among anthozoan cnidarians, but they are 2- to 8-fold lower than those found among genera of other triploblastic metazoans. Ribosomal internal transcribed spacer regions (ITS: ITS1 + ITS2) showed higher congeneric variation (17.28% in ITS1 and 10.29% in ITS2) than those of CO1 and CO3. Use of the guidelines for species thresholds suggested in the recent literature indicates that the mtDNA regions are not appropriate for use as species-specific DNA markers for the Halichondriidae sponges, whereas the rDNA ITS regions are suitable because ITS exhibits a low level of intraspecific variation and a relatively high level of interspecific variation. In addition, to test the reliability of the ITS regions for identifying Halichondriidae sponges by PCR, a species-specific multiplex PCR primer set was developed.

• Animal Systematics, Evolution and Diversity
• /
• 제27권3호
• /
• pp.205-212
• /
• 2011

Platorchestia monodi (Mateus et al., 1986), the beach hopper, commonly lives in sea shores and was previously reported only from the Atlantic regions, such as Mid-Atlantic islands, Brazilian coast, and Israel. We present the first record of this species in the Pacific region. The present species can be clearly distinguished from related species by the shapes of gnathopods 1-2 and development of sexual dimorphism in antenna 2 and pereopod 7. Descriptions of the diagnostic characteristics of the species are provided on the text. In addition, this paper also provided the partial sequence of the mitochondrial cytochrome c oxidase subunit 1 (CO1) gene of the species for its molecular characteristics.

• Journal of Species Research
• /
• 제5권3호
• /
• pp.313-317
• /
• 2016

Two marine isopods, Elaphognathia sugashimaensis (Nunomura, 1981) and Metacirolana shijikiensis Nunomura, 2008, have been reported for the first time in South Korea. Specimens of E. sugashimaensis and M. shijikiensis were collected using light traps from Yeongdeok-gun and Gageo-do Island in South Korea, respectively. The genera Elaphognathia Monod, 1926 and Metacirolana Kussakin, 1979 are new to South Korea. In this paper, we provide descriptions of diagnostic characteristics and illustrations of their morphologies. Additionally, the partial sequences of mitochondrial cytochrome c oxidase subunit 1 (CO1) of two species are provided as molecular characteristics.