• Title/Summary/Keyword: C-O bond

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Analysis of Higher Order Structure of 5S rRNA from Xanthomonas celebensis by Using Angiogenin (안지오제닌을 이용한 Xanthomonas celebensis 5S rRNA의 고차원 구조 분석)

  • Kim, Sang Beom;Jo, Bong Rae;Im, Ja Hye;Jang, Su Ik;Park, In Won
    • Journal of the Korean Chemical Society
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    • v.38 no.10
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    • pp.769-773
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    • 1994
  • Higher order structure of 5S rRNA isolated from Xanthomonas celebensis was examined using angiogenic extracted from milk. Angiogenin cleaved exclusively 3' P-O bonds on the far sides of pyrimidines in the single-stranded sequences of 5S rRNA. Whereas angiogenin acted only on the loop d of 5S rRNA at pH 7.0 in the presence of 10 mM $Mg^{2+}$, it acted on all the loops (a, b, c and d) except loop e in the absence of $Mg^{2+}$. In the absence of $Mg^{2+}$, bonds $U_{74}$-$G_{75}$, $U_{77}$-$A_{78}$ and $U_{103}$-$A_{104}$ were highly susceptible to the action of angiogenin both at pH 7.0 and at pH 3.5. On the other hand, at pH 3.5 in the absence of $Mg^{2+}$ angiogenin strongly cleaved the bond $C_{17}$-$G_{18}$ of loop a and the bond $U_{55}$-$G_{56}$ of loop b. The results lead us to the following conclusion. First, angiogenin can be used as one of the probes for the tertiary structure analysis of 5S rRNA. Second, the structure of loop d of 5S rRNA is variable depending on the concentrations of $Mg^{2+}$ and $H^{1+}$.

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Pressure Effect on the Solvolysis of o-Methylbenzyl Chloride in Ethanol-Water Mixtures (o-메틸염화벤질의 가용매분해반응에 대한 압력의 영향)

  • Oh Cheun Kwun;Jin Burm Kyong;Yong Kyun Shin
    • Journal of the Korean Chemical Society
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    • v.30 no.1
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    • pp.40-46
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    • 1986
  • Rate constants for the solvolysis of o-methylbenzyl chloride were determined at 30$^{\circ}$ and 40$^{\circ}$C in aqueous ethanol mixtures under various pressures up to 1600 bar. From the rate constants, the activation parameters ${\Delta}V^{\neq}$, ${\Delta}{\beta}^{\neq}$, ${\Delta}H^{\neq}$, ${\Delta}S^{\neq}$ and${\Delta}G^{\neq}$ were evaluated. The values exhibit the extremum behavior at about 0.30 mole fraction of ethanol. This behavior is discussed in terms of electrostriction. To examine the reaction mechanism by Laidler and Eyring equation, we compared the rate constants with the dielectric constants of aqueous ethanol and the number of water molecule participated in the transition state. It was concluded that solvolytic reaction proceeds via $S_N$1 mechanism.

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Aminolysis of 2,4-Dinitrophenyl 2-Furoate and 2-Thiophenecarboxylate: Effect of Modification of Nonleaving Group from Furoyl to Thiophenecarbonyl on Reactivity and Mechanism

  • Um, Ik-Hwan;Min, Se-Won;Chuna, Sun-Mee
    • Bulletin of the Korean Chemical Society
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    • v.29 no.7
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    • pp.1359-1363
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    • 2008
  • Second-order rate constants have been determined spectrophotometrically for reactions of 2,4-dinitrophenyl 2- thiophenecarboxylate (2) with a series of alicyclic secondary amines in 80 mol % $H_2O$/20 mol % DMSO at 25.0 ${\pm}$ 0.1 ${^{\circ}C}$. The Brønsted-type plot exhibits a downward curvature, i.e., the slope decreases from 0.74 to 0.34 as the amine basicity increases. The $pK_a$ at the center of the Brønsted curvature, defined as $pK_a^o$, has been determined to be 9.1. Comparison of the Brønsted-type plot for the reactions of 2 with that for the corresponding reactions of 2,4-dinitrophenyl 2-furoate (1) suggests that reactions of 1 and 2 proceed through a common mechanism, although 2 is less reactive than 1. The curved Brønsted-type plot has been interpreted as a change in RDS of a stepwise mechanism. The replacement of the O atom in the furoyl ring by an S atom (1 $\rightarrow$ 2) does not alter the reaction mechanism but causes a decrease in reactivity. Dissection of the apparent second-order rate constants into the microscopic rate constants has revealed that the $k_2/k_{-1}$ ratio is not influenced upon changing the nonleaving group from furoyl to thiophenecarbonyl. However, $k_1$ has been calculated to be smaller for the reactions of 2 than for the corresponding reactions of 1, indicating that the C=O bond in the thiophenecarboxylate 2 is less electrophilic than that in the furoate 1. The smaller k1 for the reactions of 2 is fully responsible for the fact that 2 is less reactive than 1.

Preparation and Structure of $[Cu(L)]I_2\cdot2H_2O(L: 3,14-dimethyl-2,6,13,17-tetraazatricyclo [14,4,$0^{1.18},0^{7.12}$]docosane) ($[Cu(L)]I_2\cdot2H_2O(L: 3,14-dimethyl-2,6,13,17-tetraazatricyclo [14,4,$0^{1.18},0^{7.12}$docosane) 착물의 합성 및 구조)

  • Choe, Gi-Yeong;Kim, Dong-Un;Seo, Il-Hwan
    • Korean Journal of Crystallography
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    • v.9 no.1
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    • pp.1-5
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    • 1998
  • The complex[Cu(L)I2, 2H2O(1) (L:3,14-Dimethyl-2,6,13,17-tetraazatricyclo [14,4,01.18, 07.12]docosane) has been prepared and structurally characterized. The complex (1) crystallizes in the triclinic system, space group P1, a=8.400(1)Å, b=8.986(3) Å, c=9.156(1) Å, α=82.42(1)˚, β=73.61(1)˚ λ=81.04(2)˚, Z=1, R for 1926 observed reflections of [F0>40(F0)], measured at 288K, was 0.042. The tetracoordination around Cu atom of complex(1) is square plane and the average bond distance of Cu-N is 2.029 (11) Å. Both six-membered chelate rings adopts a chair conformation and the five-membered ring are gauche with the sec-NH centers having the RRSS configuration.

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A Study on the Steam Reforming Reaction of DME on Cu/ZnO/Al2O3 Catalyst for Hydrogen Production (수소 생산을 위한 Cu/ZnO/Al2O3 촉매상에서 DME의 수증기 개질 반응 연구)

  • HYUNSEUNG BYUN;YUNJI KU;JUHEE OH;JAESUNG BAN;YOUNGJIN RAH;JESEOL LEE;WONJUN CHO
    • Transactions of the Korean hydrogen and new energy society
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    • v.34 no.6
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    • pp.581-586
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    • 2023
  • As the development of alternative energy is required due to the depletion of fossil fuels, interest in the use of hydrogen energy is increasing. Hydrogen is a promising clean energy source with high energy density and can lead to the application of environmentally friendly technologies. However, due to difficulties in production, storage, and transportation that prevent the application of hydrogen-based eco-friendly technology, research on reforming reactions using dimethyl ether (DME) is being conducted. Unlike other hydrocarbons, DME is attracting attention as a hydrogen carrier because it has excellent storage stability and transportability, and there is no C-C bond in the molecule. The reaction between DME and steam is one of the reforming processes with the highest hydrogen yield in theory at a temperature lower than that of other hydrocarbons. In this study, a hydrogen reforming device using DME was developed and a catalyst prepared by supporting Cu in alumina was put into a reactor to find optimal hydrogen production conditions for supplying hydrogen to fuel cells while changing reaction temperature (300-500℃), pressure (5-10 bar), and steam/carbon ratio (3:1 to 5:1).

Effect of Heat Treatment of Fatigue Crack Growth of Plasma-Sprayed Coating Steels (플라즈마 용사코팅강재의 피로균열성장에 미치는 감화열처리의 영향)

  • Kim, G.S.;Hyun, C.H.;Kim, Y.S.
    • Journal of Power System Engineering
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    • v.7 no.4
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    • pp.55-60
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    • 2003
  • This paper is to investigate the fatigue crack growth of plasma-sprayed coating steels according to heat treatments. The experimental materials are carbon steels(substrate: S45C) with plasma-sprayed coating layers of Ni-4.5%Al and $TiO_2$. The fatigue test is conducted on compact tension specimen by a servo-hydraulic fatigue testing machine. The specimens are heat-treated at $400^{\circ}C\;and\;800^{\circ}C$, respectively. Loading condition is a constant amplitude sinusoidal wave with a frequency of 10Hz and a load ratio of 0.1. The fatigue crack growth length is automatically measured by a compliance method. In the case of non-heat treated specimens, the fatigue crack growth rates of both substrate and coating specimen are almost same. The crack growth rates of substrates and coating steels by heat treatment are larger than those of the non-heat treated one, because the ductile property increase by heat treatment. In ${\Delta}K<18MPa{\cdot}m^{1/2}$, the crack growth rates of the heat-treated specimens are slightly taster than non-heat treated one. But the both heated and non-heated one are almost same in ${\Delta}K>18MPa{\cdot}m^{1/2}$.

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Synthesis of Aromatic and Aliphatic Compound from Kraft Oak Lignin and Acetosolve Straw Lignin by Thermochemical Liquefaction (참나무 크라프트 리그닌과 볏짚 아세토솔브 리그닌의 열-화학적 분해에 의한 방향족(Aromatic)과 지방족(Aliphatic)화합물의 합성)

  • Lee, Byung-G.
    • Journal of the Korean Wood Science and Technology
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    • v.25 no.1
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    • pp.1-7
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    • 1997
  • Kraft oak lignin and ricestraw lignin from acetosolve pulping were dissolved in 50/50 mixture of tetralin/m-cresol solvent. The dissolved lignin was reacted in the pressurized autoclave which was operating at $350{\sim}500^{\circ}C$ of reaction temperature and 10~20 atms of reaction pressure respectively_Hydrogen pressure of 60~80kg/$cm^2$ was exercising into the pressurized autoclave reactor to create thermochemical hydrogenolysis reaction. It was identified by GLC, GC-MS and HPLC that the alkyl-aryl-${\beta}$-O-4 ether bond of lignin was cleaved and degraded into various smaller molecules of aromatic compound such as phenols and cresols under the reaction conditions around $300^{\circ}C$ and 10 atms of reaction temoerature and pressure. Hydrogenolysis reaction of lignin compound which was done above $500^{\circ}C$ of reaction temperature and 20 atms of reaction pressure showed that the amount of aromatic compound such as phenols and cresols degraded from reactant lignin was decreasing with newly present and increasing water out of product mixtures. It was supposed that new aliphatic compound of high molecular weight hydrocarbon is composed due to higher reaction temperature and pressure of hydrogenolysis reaction such as $500^{\circ}C$ and 20 atms, even though it was almost impossible, to identify what kind of degraded products it was by HPLC.

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Ginsenoside $Rg_5$, A Genuine Dammarane Glycoside from Korean Red Ginseng

  • Kim, Shin-Il;Park, Jeong-Hill;Ryu, Jae-Ha;Park, Jong-Dae;Lee, You-Hui;Park, Jae-Hyun;Kim, Tae-Hee;Kim, Jong-Moon;Baek, Nam-In
    • Archives of Pharmacal Research
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    • v.19 no.6
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    • pp.551-553
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    • 1996
  • A genuine dammarane glycoside, named ginsenoside $Rg_{5}$, has been isolated by repeated column chromatography and preparative HPLC from the MeOH extract of Korean red ginseng (Panax ginseng C.A. Meyer). The chemical structure of ginsenoside$ Rg_{5}$ was determined as $3-O-[{\beta}-D-glucopyranosyl (1{\rightarrow}2)-{\beta}-D-glucopyranosyl]$ dammar-20(22), $24-diene-3{\beta},12{\beta}-diol$ by spectral and chemical methods. The stereostructure of a double bond at C-20(22) of ginsenoside $Rg_{5}$ was characterized as (E) from the chemical shift of C-21 in the $^{13}C-NMR $and a NOESY experiment in the $^{1}H-NMR$.

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Synthesis and Characterization of the Layered Type $(C_nH_{2n+1}NH_3)_2PbCl_4$ System

  • Lee, Su Jong;Kim, Gye Ya;O, Eun Ju;Kim, Gyu Hong;Yeo, Cheol Hyeon
    • Bulletin of the Korean Chemical Society
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    • v.21 no.3
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    • pp.317-320
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    • 2000
  • Layered $K_2NiF_4$type ($C_nH_{2n+1}NH_3)_2PbCl_4$(n=6, 8 and 10) system, or alkylammonium tetrachloroplumbate compound, has been synthesized from $PbCl_2$ and $C_nH_{2n+1}NH_3Cl$ solutions under argon ambient pressure for 12hrs at $90^{\circ}C$. The crystal structure of the compound has been analyzed using X-ray powder diffaction in the range of $5^{\circ}{\leq}2{\theta}{\leq}55^{\circ}$, and all samples assigned to an orthorhombic system. Local distances of the Pb-Cl bond have been determined by Pb $L_{III}$-edge extended X-ray absorption fine structure (EXAFS) spectroscopy. The vibration modes of alkylammonium chains and the absorpton peaks of an excition have been examined by FT-IR and UV-Vis. reflectance spectra, respectively. The phase transition temperatures of the compounds have been studied by using DSC. According to the thermal analysis, two phase transition temperatures have been observed in the compositons of n=8 and 10.

Crystal Structure of N[1(benzotriazol-1-yl)butyl]-p-nitroaniline (N-[1-(benzotriazol-1-yl)butyl]-p-nitroaniline의 구조)

  • Jo, So-Ra;Kim, Mun-Jip;Seong, Nak-Do
    • Korean Journal of Crystallography
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    • v.5 no.2
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    • pp.78-84
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    • 1994
  • The crystal structure of N-11-(benzotriazol-1-yl)butyl]-P-nitroaniline ( C16H17N502) has been determinedfromsingle crystal x-ray diffractionstudy:C16H17N502 monoclinic, P21/n, a=17542(2)A, b=10.755(3)A, c=8.891(1)A, β=104.58(1)˚, V=1623.4(5)A3, 7=293(2)K, Z=4, Cuka(A = 1.5418A) , The molecular structure was solved was by direct meshed refined by full-matrix least squares to a final R =0.0411 for 2248 unique observed [F≥4o(p) ] reflections and 255 Parameters. The crystal structure is stabilized by intermolecular N (11) -Hl 1 (Nl 1) ‥‥N (3) hydrogen bond with N(11) ‥‥ N(3) =3.136(2)A and N(11)-Hll(Nll)‥‥N(3) =164.1(15) ˚.

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