• Title/Summary/Keyword: C-4 Poaceae

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Preliminary research for molecular markers of two invasive toxic weeds, Cenchrus L. (Poaceae) species, based on NGS technique

  • Hyun, JongYoung;Jung, Joonhyung;Do, Hoang Dang Khoa;Kim, Joo-Hwan
    • Proceedings of the Plant Resources Society of Korea Conference
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    • 2019.04a
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    • pp.71-71
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    • 2019
  • The genus Cenchrus (Poaceae), containing ca. 23 species, is distributed throughout Australia, Africa, Indian sub-continent, and America. In Korea, Cenchrus longispinus (Hack.) Fernald, especially introduced to Daecheong Island in 1999, is one of the most hazardous invasive plant which causes serious environmental threats, biodiversity damages and physically negative impact on humans and animals. Based on the next-generation sequencing (NGS) technology, we characterized the chloroplast (cp) genome sequences of C. longispinus which contains a large single copy (LSC; 80,223 bp), a small single copy (SSC; 12,449 bp), separated by a pair of inverted repeats (IRs; 22,236 bp). Additionally, we analyzed the cp genome sequences of Cenchrus echinatus L. which contains a large single copy (LSC; 80,220 bp), a small single copy (SSC; 12,439 bp), separated by a pair of inverted repeats (IRs; 22,236 bp). These cp genomes consist of 75 unique genes, 4 rRNA coding genes, 33 tRNA coding genes and 21 duplicated in the IR regions, of which the gene content and organization are similar to the other Poaceae cp genomes. We selected 40 potential regions in cp genomes of two Cenchrus species and one Korean Pennisetum species to develop new single nucleotide polymorphism (SNP) markers for identifying C. longispinus based on amplification-refractory mutation system (ARMS) technique. The markers, inferred from SNP in matK and ndhF genes, show effectiveness to recognize C. longispinus from C. echinatus and Korean native species Pennisetum alopecuroides (L.) Spreng.

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Perspectives on the genomics research of important crops in the tribe Andropogoneae: Focusing on the Saccharum complex

  • Choi, Sang Chul;Chung, Yong Suk;Kim, Changsoo
    • Korean Journal of Agricultural Science
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    • v.43 no.1
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    • pp.1-13
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    • 2016
  • Climate changes are shifting the perception of C4 photosynthetic crops due to their superior adaptability to harsh conditions. The tribe Andropogoneae includes some economically important grasses, such as Zea mays, Sorghum bicolor, Miscanthus spp., and Saccharum spp., representing C4 photosynthetic grasses. Although the Andropogoneae grasses diverged fairly recently, their genomic structures are remarkably different from each other. As previously reported, the family Poaceae shares the pan-cereal duplication event occurring ca. 65 MYA. Since this event, Sorghum bicolor has never experienced any additional duplication event. However, some lineage-specific duplication events were reported in Z. mays and Saccharum spp., and, more recently, it was revealed that a shared allotetraploidization event occurred before the divergence between Miscanthus and Saccharum (but after the divergence from S. bicolor), which provided important clues to those two species having large genome sizes with complicated ploidy numbers. The complex genomic structures of sugarcane and Miscanthus (defined as the Saccharum complex along with some other taxa) have had a limiting effect on the use of their molecular information in breeding programs. For the last decade, genomics-associated technologies have become an important tool for molecular crop breeding (genomics-assisted breeding, GAB), but it has not been directly applied to sugarcane and Miscanthus due to their complicated genome structures. As genomics research advances, molecular breeding of those crops can take advantage of technical improvements at a reasonable cost through comparative genomic approaches. Active genomic research of non-model species using closely related model species will facilitate the improvement of those crops in the future.

New Stigmastane Steroids Constituents from Rice Hulls of Oryza sativa and Inhibitory Activity on Radish seed

  • Jeong, Il-Min;Ali, Mohd;Khanh, Tran Dang;Choung, Myoung-Gun;Park, Hong-Jae;Ahmad, Ateeque
    • Bulletin of the Korean Chemical Society
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    • v.27 no.1
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    • pp.93-98
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    • 2006
  • Two new compounds 1'-(stigmast-11,20(21),25-trien 3$\alpha$,9$\alpha$-diolyl)-3'-(pimara-11,15-dien-3$\alpha$-olyl) glycerol (1) and stigmast-5-en-3$\alpha$,26-diol (2) along with known fatty acids n-hexacosanoic acid (3) and hexadecanoic acid (4), have been isolated from the methanol extract of rice hulls of Oryza sativa. The structures of the compounds were elucidated using 1D and 2D NMR spectral methods, viz; $^1H, ^{13}C, ^{13}C$-DEPT, $^1H-^1H$ COSY, $^1H-^{13}C$ HETCOR, HSQC and HMBC aided by IR, EIMS, FABMS and HRFABMS. Compound (1) showed inhibition to radish germination, growth of shoot and root length.

Rapid Isolation of Cyanidin 3-Glucoside and Peonidin 3-Glucoside from Black Rice (Oryza sativa) Using High-Performance Countercurrent Chromatography and Reversed-Phase Column Chromatography

  • Jeon, Heejin;Choi, Janggyoo;Choi, Soo-Jung;Lee, Chang Uk;Yoon, Shin Hee;Kim, Jinwoong;Yoon, Kee Dong
    • Natural Product Sciences
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    • v.21 no.1
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    • pp.30-33
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    • 2015
  • Anthocyanins are water soluble plant pigments which are responsible for the blue, red, pink, violet colors in several plant organs such as flowers, fruits, leaves and roots. In recent years, anthocyanin-rich foods have been favored as dietary supplements and health care products due to diverse biological activities of anthocyanins including antioxidant, anti-allergic, anti-diabetic, anti-microbial, anti-cancer and preventing cardiovascular disease. High-performance countercurrent chromatography (HPCCC) coupled with reversed-phase medium pressure liquid chromatography (RP MPLC) method was applied for the rapid and efficient isolation of cyanidin 3-glucoside (C3G) and peonidin 3-glucoside (P3G) from black rice (Oryza sativa L., Poaceae). The crude black rice extract (500 mg) was subjected to HPCCC using two-phase solvent system composed of tert-butyl methyl ether/n-butanol/ acetonitrile/0.01% trifluoroacetic acid (TBME/B/A/0.01% TFA, 1 : 3 : 1 : 5, v/v, flow rate - 4.5 mL/min, reversed phase mode) to give enriched anthocyanin extract (37.4 mg), and enriched anthocyanin extract was sequentially chromatographed on RP-MPLC to yield C3G (16.5 mg) and P3G (8.7 mg). The recovery rate and purity of isolated C3G were 76.0% and 98.2%, respectively, and those of P3G were 58.3% and 96.3%, respectively. The present study indicates that HPCCC coupled with RP-MPLC method is more rapid and efficient than multi-step conventional column chromatography for the separation of anthocyanins.

Distribution and Botanical Characteristics of Unrecorded Alien Weed Spartina anglica in Korea (미기록 외래잡초 영국갯끈풀의 국내 분포와 식물학적 특성)

  • Kim, Eun-Kyu;Kil, Jihyon;Joo, Young-Kyoo;Jung, Young-Sang
    • Weed & Turfgrass Science
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    • v.4 no.1
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    • pp.65-70
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    • 2015
  • We have found the plants belonging to the genus Spartina which has not yet been reported for the flora of Korea. This has been distributed at Dongmak seashore in Ganghwado since 2012. These were identified as common cordgrass (Spartina anglica C. E. Hubb.) belonging to the family Poaceae, the genus Spartina. It is a perennial halophyte as an alien weed that can grow in the tidal flat, native to southern England. Here, we named it for 'Young-guk-Gaet-ggeun-pool' in Korean refer the origin, reported the distribution, spreading condition, and botanical characteristics of common cordgrass. In China, Spartina anglica was introduced in 1963, it was approved that it had benefit in a bioengineering side firstly. But it was known that as a highly invasive plant to make a monotype meadow of Spartina anglica which has deteriorate the ecological function of saltmarsh. And also it has another problem that is not easy to eradicate. The spreading of Spartina anglica which was appeared in the West coast of Korea may threaten severely to the domestic mudflat and estuary ecosystem. For the maintenance of mudflat ecosystem soundly, continuous monitoring and active eradication plans are required.

Floristic Study of Jingangsan (Ganghwa-gun), Korea (진강산(강화군)의 관속식물상)

  • Kim, Jung-Hyun;Park, Sung-Ae;Yoon, Chang-Young
    • Korean Journal of Plant Resources
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    • v.29 no.2
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    • pp.189-203
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    • 2016
  • This study was carried out to investigate the flora of Jingangsan Mt. (Ganghwa-gun). The vascular plants identified during the 11 round field surveys were a to total of 560 taxa: 114 families, 336 genera, 495 species, 7 subspecies, 53 varieties, 4 forms and 1 hybrid. A high plant diversity were Poaceae (11.0%), Asteraceae (10.8%), Cyperaceae (8.8%), Rosaceae (4.6%) and Lamiaceae (4.3%) in regular order. The four taxa of Korean endemic plants such as Viola seoulensis Nakai, Salix koriyanagi Kimura ex Goerz, Hemerocallis hakuunensis Nakai and Polygonatum infundiflorum Y. S. Kim, B. U. Oh & C. G. Jang were collected. The vascular plants on the red list according to IUCN evaluation basis were found to be four taxa: Near Threatened (NT) species of Delphinium maackianum Regel, and Not Evaluate (NE) species of Mosla japonica (Benth. ex Oliv.) Maxim., Carex paxii Kük. and Polygonatum infundiflorum Y. S. Kim, B. U. Oh & C. G. Jang. The floristic regional indicator plants found in this area were 28 taxa comprising two taxa of degree IV, three taxa of degree III, eight taxa of degree II, and 15 taxa of degree I. In addition, the naturalized plants were identified as 44 taxa and the percentage of naturalized index (NI) was 7.9%, and Urbanization Index (UI) was 13.7%.

Investigation of Weed Flora in Pastures in Jeju Island (제주지역 목초지에 발생하는 잡초양상)

  • Lee, In-Yong;Kim, Chang-Seok;Lee, Jeongran;Hwang, Kyung-Jun;Kim, Kyung-Hoon;Kim, Mi-Seon;Song, Hee-Kun
    • Weed & Turfgrass Science
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    • v.4 no.1
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    • pp.10-17
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    • 2015
  • This study was conducted to investigate the occurrence of weed flora in pastures in Jeju island of Korea and to establish the basic data for controlling them occurred in the pastures. Weed flora was investigated twice, May and July on 2003. There were a total of 207 weed species including 49 families. Among them 67 species were annual, 39 species were biennial and 101 species were perennial. The compositions of major plant families, Asteraceae, Poaceae, Polygonaceae, Rosaceae, Fabaceae were 17, 15, 8, 7, 6%, respectively. Sixty-eight species of exotics were occurred, as well. Rumex obtusifolius was the highest in importance analysis and the followings were in order of Trifolium repens, Artemisia princeps, Plantago asiatica, Potentilla anemonefolia and Rumex acetosella etc. Among the exotic weeds, R. obtusifolius, T. repens, R. acetosella and C. holosteoides var. hallaisanense might be most problematic weeds species in pastures in Jeju island in the future. And at the boundary of some pastures and mountains Smilax china, Duchesnea indica, Rosa maximowicziana, etc. 17 shrub species were also occurred.

Human Impact on the Environment of Highland Central Mexico during the Pre-and Post-Conquest (멕시코 중부 고산 지역에서 스페인 식민 통치 시기를 전후하여 일어난 인위적 환경 변화)

  • Park, Jung-Jae
    • Journal of the Korean Geographical Society
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    • v.40 no.4 s.109
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    • pp.428-440
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    • 2005
  • There is currently no agreement among archaeologists, environmental historians, and paleoecologists as to the relative significance of pre- and post-Conquest human impact on the environments of Highland Mexico. This paper presents the results of pollen, microscopic charcoal, dung fungal spore, isotope, and magnetic susceptibility analyses on ca. 4m sediment core. The coring site is Hoya Rincon de Parangueo, one of the seven maar lakes in the Valle do Santiago. Amaranthaceae pollen, one of important disturbance indicators and Zea mays pollen obviously indicate two periods of agricultural activities. The first period begins ca. 400 B.C. and ends ca. A.D. 850. The second begins around A.D. 1550 and continues to the present. During the first period, the degree of agricultural activities was related to periodical sunspot cycles and the most intense activities were present between ca. A.D. 150-ca. A.D. 400. The abrupt increase of $\delta^{18}O$ around 280cm may reflect that an important transition to a dry phase took place around A.D. 450. People probably stopped cultivating crops due to dry conditions prevailing since ca. A.D. 450. The second period, the post-Conquest, exhibits a dramatic increase of sporormiella, dung fungal spores resulted fron the introduction of cattle. Low Poaceae frequency and charcoal production and high $\delta^{13}C$ values, magnetic susceptibility, and organic contents all indicate the arrival of the Spanish. Most importantly, it seems that mesquite (Prosopis juliflora) could have benefits from declined fire frequencies caused by cattle grazing. The study area is now entirely dominated by woody plants like mesquite, which clearly demonstrates that serious vegetation change occurred in the study area.

Weed Flora Diversity and Composition on Upland Field of Korea (우리나라 밭작물 재배지 잡초 발생 및 분포현황)

  • Lee, In-Yong;Oh, Young-Ju;Hong, Sun-Hee;Choi, Jun-Keun;Heo, Su-Jeoung;Lee, Chae-Young;Hwang, Ki-Seon;Park, Kee-Woong;Cho, Seng-Hyun;Kwon, Oh-Do;Im, Il-Bin;Kim, Sang-Kuk;Seong, Deok-Gyeong;Chung, Young-Jae;Kim, Chang-Seok;Lee, Jeongran;Seo, Hyun-A;Jang, Hyung-Mok
    • Weed & Turfgrass Science
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    • v.4 no.3
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    • pp.159-175
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    • 2015
  • Surveys of weed species on upland fields were conducted in Korea to investigate the occurrence of weed flora from April to May 2014 for winter crop fields and from July to August 2014 for summer crop fields. From the nation-wide survey, 375 weed species in 50 families were identified and classified to 162 annuals, 78 biennials and 135 perennials. Based on the occurrence ratio, the most weed species belonged to Compositae (73 species). 44 and 25 weed species belonged to Poaceae and Polygonaceae, respectively, and these 183 weed species in the most five families accounted for 49% of total weed occurrence. While 287 weed species in 45 families occurred in the winter crop fields, 339 weed species in 47 families occurred in summer crop fields. The most dominant weed species in Korean upland fields were Digitaria ciliaris, followed by Portulaca oleracea, Acalypha australis, Chenopodium album, Rorippa palustris etc. 129 weed species in 25 families were considered as exotic weeds. Based on the importance analysis, the highest value was C. album followed by Amaranthus lividus, Conyza canadensis etc. This information could be useful for estimation of future weed occurrence, weed population dynamics and establishment of weed control methods in upland fields of Korea.