• The Korean Journal of Mycology
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• v.44 no.1
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• pp.48-50
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• 2016

A previously unrecorded species, Metacordyceps chlamydosporia KNU14-22, was isolated from soil in Korea. Identification of the fungal species was based on morphological and molecular characteristics. This species has not been previously reported in Korea and herein we present data with detailed descriptions and figures.

• Journal of Biomedical Engineering Research
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• v.17 no.2
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• pp.227-234
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• 1996

This paper is the study of the diffusion constant in order to calculate the percent oxygenation and percent blood volume using reflectance light within biological tissue. The diffusion constant play major role in percent oxygenation and percent blood volume and varies with the biological material such as hemolyzed blood, whole blood, dermis and epidermis in vivo tissue. The diffusion constant can be modeled to consist of a contribution from bloodless tissue and blood present in tissue. The reflectance light for experimental are red light of 660nm, infrared light of 880nm, green light of 569nm. The correlation between the diffusion constant and biological tissue was analyzed by the intensity of reflectance light at different depth within human limb. The reflectance light was changed in response to physiological changes within biological tissue. The data for diffusion constant were obtained at different depth beneath the surface of the skin and will be utilized to amen the percent oxygenation and percent blood volume.

• The Korean Journal of Mycology
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• v.50 no.4
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• pp.347-355
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• 2022

A fungal isolate belonging to the phylum Ascomycota was isolated and identified as Talaromyces veerkampii in 2017 during a survey of fungal diversity in field soils in Korea. This fungal isolate was identified and described based on macro- and micromorphological and molecular characterization. The identification was also based on partial 18S-ITS1-5.8S-ITS2-28S rDNA and calmodulin (CaM)-encoding gene sequencing data. Talaromyces veerkampii has not been previously reported in Korea. Thus, we report here a newly discovered species from soil in Korea along with its morphological and molecular characteristics.

• Journal of Ecology and Environment
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• v.46 no.4
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• pp.292-303
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• 2022

Background: Climate change significantly influences the geographical distribution of plant species worldwide. Selecting indicator species allows for better-informed and more effective ecosystem management in response to climate change. The Korean Peninsula is the northernmost distribution zone of warm temperate evergreen broad-leaved (WTEB) species in Northeast Asia. Considering the ecological value of these species, we evaluated the current distribution range and future suitable habitat for 13 WTEB tree species designated as climate-sensitive biological indicator species. Results: Up-to-date and accurate WTEB species distribution maps were constructed using herbarium specimens and citizen science data from the Korea Biodiversity Observation Network. Current northern limits for several species have shifted to higher latitudes compared to previous records. For example, the northern latitude limit for Stauntonia hexaphylla is higher (37° 02' N, Deokjeokdo archipelago) than that reported previously (36° 13' N). The minimum temperature of the coldest month (Bio6) is the major factor influencing species distribution. Under future climate change scenarios, suitable habitats are predicted to expand toward higher latitudes inland and along the western coastal areas. Conclusions: Our results support the suitability of WTEB trees as significant biological indicators of species' responses to warming. The findings also suggest the need for consistent monitoring of species distribution shifts. This study provides an important baseline dataset for future monitoring and management of indicator species' responses to changing climate conditions in South Korea.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.25 no.2
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• pp.55-67
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• 2022

Land use is a critical factor that affects the hydrological characteristics of watersheds, thereby determining the biological condition of streams. This study analyzes the effects of land uses in the watersheds on biological indicators of streams across the Han River basin using a linear model (LM) and generalized additive model (GAM). LULC and biological monitoring data of streams were obtained from the Korean Ministry of Environment. The proportions of urban, agricultural, and forest areas in the watersheds were regressed to the three biological indicators, including diatom, benthic macroinvertebrate, and fish of streams. The estimated LM and GAM models for the biological indicators were then compared, using regression determination R² and AIC values. The results revealed that GAM models performed better than the LM models in explaining the variances of biological indicators of streams, indicating the non-linear relationships between biological indicators and land uses in watersheds. Also, the results suggested that the indicator of macroinvertebrates was the most sensitive indicator to land uses in watersheds. Although non-linear relationships between watershed land uses and biological indicators of streams could vary among biological indicators, it was consistent that streams' biological integrity significantly deteriorated by a relatively low percentage of urban areas. Meanwhile, biological indicators of streams were negatively affected by the relatively high percentage of agricultural areas. The results of this study can be integrated into effective quantitative criteria for the watershed management and land use plans to enhance the biological integrity of streams. In specific, land uses management plans in watersheds may need more close attention to urban land use changes than agricultural land uses to sustain the biological integrity of streams.

• Journal of Microbiology and Biotechnology
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• v.31 no.6
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• pp.890-901
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• 2021

The 11α-hydroxylation of canrenone can be catalyzed by Aspergillus ochraceus in bioreactors, where the geometry of the impeller greatly influences the biotransformation. In this study, the effects of the blade number and impeller diameter of a Rushton turbine on the 11α-hydroxylation of canrenone were considered. The results of fermentation experiments using a 50 mm four-blade impeller showed that 3.40% and 11.43% increases in the conversion ratio were achieved by increasing the blade number and impeller diameter, respectively. However, with an impeller diameter of 60 mm, the conversion ratio with a six-blade impeller was 14.42% lower than that with a four-blade impeller. Data from cold model experiments with a large-diameter six-blade impeller indicated that the serious leakage of inclusions and a 22.08% enzyme activity retention led to a low conversion ratio. Numerical simulations suggested that there was good gas distribution and high fluid flow velocity when the fluid was stirred by large-diameter impellers, resulting in a high dissolved oxygen content and good bulk circulation, which positively affected hyphal growth and metabolism. However, a large-diameter six-blade impeller created overly high shear compared to a large-diameter four-blade impeller, thereby decreasing the conversion ratio. The average shear rates of the former and latter cases were 43.25 s^-1 and 35.31 s^-1, respectively. We therefore concluded that appropriate shear should be applied in the 11α-hydroxylation of canrenone. Overall, this study provides basic data for the scaled-up production of 11α-hydroxycanrenone.

• The Journal of the Korea Contents Association
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• v.18 no.12
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• pp.611-623
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• 2018

Ten middle-aged women who support their biological parents have been interviewed to investigate their experiences of caregiving their parents. As a qualitative research method, data were collected through in-depth interviews and analyzed by Colaizzi's phenomenological method. Consequently 244 meaningful sentences were selected from the collected interview data and then were sorted into 67 meaningful sentences and, consequently into 9 sub-themes. Finally four high-level themes are wrapped through the summarizing process. The first theme is motivation of caregiving. Inevitable cases are most common for caregiving their biological parents. And, general responsibilities to their parents are also deduced as a motivation of caregiving. The second theme is a psychological phenomenon of middle-aged women while they provide consistent caregiving their biological parents even though they have some troubles with their parents. The third theme is meaning of caregiving. For some women, caregiving their biological parents is their own happiness and gratitude such as lifelong gifts. The final theme is influence of caregiving. Further understanding their parents, and more distinct prospecting their future lives are unexpected fruits from the caregiving their biological parents.

• The Plant Pathology Journal
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• v.37 no.6
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• pp.521-532
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• 2021

Knowledge and better understanding of functions of the microbial community are pivotal for crop management. This study was conducted to study bacterial structures including Acidovorax species community structures and diversity from the watermelon cultivated soils in different regions of South Korea. In this study, soil samples were collected from watermelon cultivation areas from various places of South Korea and microbiome analysis was performed to analyze bacterial communities including Acidovorax species community. Next generation sequencing (NGS) was performed by extracting genomic DNA from 92 soil samples from 8 different provinces using a fast genomic DNA extraction kit. NGS data analysis results revealed that, total, 39,367 operational taxonomic unit (OTU), were obtained. NGS data results revealed that, most dominant phylum in all the soil samples was Proteobacteria (37.3%). In addition, most abundant genus was Acidobacterium (1.8%) in all the samples. In order to analyze species diversity among the collected soil samples, OTUs, community diversity, and Shannon index were measured. Shannon (9.297) and inverse Simpson (0.996) were found to have the highest diversity scores in the greenhouse soil sample of Gyeonggi-do province (GG4). Results from NGS sequencing suggest that, most of the soil samples consists of similar trend of bacterial community and diversity. Environmental factors play a key role in shaping the bacterial community and diversity. In order to address this statement, further correlation analysis between soil physical and chemical parameters with dominant bacterial community will be carried out to observe their interactions.

• The Microorganisms and Industry
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• v.15 no.1
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• pp.29-34
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• 1989

It is our common understanding that biological materials like microorganisms, tissue and cell cultures, seeds, plants and animals are inevitable resources for the development of science and technology. Culture collections which are reservior of biological materials now occupy a central position in life sciences and biotechnology. The World Data Center of Microorganisms (WDC) is a infrastructure of culture collections in the world realizing quick and smooth exchanges of information and microorganisms to support research and development in those fields. The WDC was relocated from University of Queensland in Australia to out institute RIKEN in 1986. This article introduces a function for WDC in RIKEN (RIKAGAKU-KENKYUUSHO, the Institute of Physical and Chemical Research)

• Genomics & Informatics
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• v.7 no.4
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• pp.212-216
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• 2009

WebChemDB is an integrated chemical database retrieval system that provides access to over 8 million publicly available chemical structures, including related information on their biological activities and direct links to other public chemical resources, such as PubChem, ChEBI, and DrugBank. The data are publicly available over the web, using two-dimensional (2D) and three-dimensional (3D) structure retrieval systems with various filters and molecular descriptors. The web services API also provides researchers with functionalities to programmatically manipulate, search, and analyze the data.