• Genomics & Informatics
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• v.10 no.1
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• pp.16-22
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• 2012

Autosomal dominant polycystic kidney disease (ADPKD) is characterized by formation of multiple fluid-filled cysts that expand over time and destroy renal architecture. The proteins encoded by the $PKD1$ and $PKD2$ genes, mutations in which account for nearly all cases of ADPKD, may help guard against cystogenesis. Previously developed mouse models of $PKD1$ and $PKD2$ demonstrated an embryonic lethal phenotype and massive cyst formation in the kidney, indicating that $PKD1$ and $PKD2$ probably play important roles during normal renal tubular development. However, their precise role in development and the cellular mechanisms of cyst formation induced by $PKD1$ and $PKD2$ mutations are not fully understood. To address this question, we presently created $Pkd2$ knockout and $PKD2$ transgenic mouse embryo fibroblasts. We used a mouse oligonucleotide microarray to identify messenger RNAs whose expression was altered by the overexpression of the $PKD2$ or knockout of the $Pkd2$. The majority of identified mutations was involved in critical biological processes, such as metabolism, transcription, cell adhesion, cell cycle, and signal transduction. Herein, we confirmed differential expressions of several genes including aquaporin-1, according to different $PKD2$ expression levels in ADPKD mouse models, through microarray analysis. These data may be helpful in $PKD2$-related mechanisms of ADPKD pathogenesis.

• Journal of the Korean Data and Information Science Society
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• v.17 no.2
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• pp.569-579
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• 2006

Recently, the amount of genome sequence is increasing rapidly due to advanced computational techniques and experimental tools in the biological area. Sequence comparisons are very useful operations to predict the functions of the genes or proteins. However, it takes too much time to compare long sequence data and there are many research results for fast sequence comparisons. In this paper, we propose a hybrid grid system to improve the performance of the sequence comparisons based on the LanLinux system. Compared with conventional approaches, hybrid grid is easy to construct, maintain, and manage because there is no need to install SWs for every node. As a real experiment, we constructed an orthologous database for 89 prokaryotes just in a week under hybrid grid; note that it requires 33 weeks on a single computer.

• Journal of Environmental Science International
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• v.14 no.12
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• pp.1155-1161
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• 2005

Anoxic-oxic process were analyzed numerically for the each unit and final TN effluent by Water Quality Management(WQM) model and the results were compared data from these sewage or wastewater treatment plants. No bugs and logic error were occurred during simulation work. All of the simulation results tried to two times were obtained and both results were almost same thus this model has good reappearance. A few of simulation results were deviated with measured data because lack of influent water qualities are reported however simulation results have wholly good relationship with measured data. Also each unit of simulation result was kept good relationship with that of measured data therefore this WQM model has good reliance. Finally, WQM model predicts final TN effluent within ${\pm}4.1\;mg/{\ell}$

• IEIE Transactions on Smart Processing and Computing
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• v.5 no.6
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• pp.395-402
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• 2016

In these days, the wearable devices have been developed for measuring biological data effectively. However, wearable devices have tissue allege and noise problem. Also, it is impossible for a remote center to identify the person whose data are measured by wearable devices, which could trigger a communication problem over treatment. To solve these problems, biometric measurement based on a non-contact method, such as face image sequencing is necessary. This makes it possible to measure biometric data without any operation and side effects. This system can monitor the biological signals of people in real time without allege and noise and simultaneously identify them. In this paper, we propose an authentication process while measuring biometric data, through a non-contact method.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.26 no.3
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• pp.263-276
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• 2021

Marine benthic organisms have been used as the indicators for the environment assessment and recently considered as a very important component in the biodiversity and ecosystem restoration. In Korean waters, the quantitative data on marine benthos was used as one of major components for the marine pollution assessment for 50 years since 1970s. The species identification which is an important factor for the quantitative biological data was mainly performed by the marine benthic ecologists. This leads to the deterioration of the data quality on marine benthos from the misidentication of major taxonomic groups due to the lack of taxonomic expertise in Korea. This taxonomic problem has not been solved until now and remains in most data from national research projects on the marine ecosystems in Korean waters. Here we introduce the quality assurance and control (QA/QC) system for the marine biological data in UK, that is, NMBAQC (Northeast Atlantic Marine Biological Analytic and Quality Control) Scheme which has been performed by private companies to solve similar species identification problems in UK. This scheme asks for all marine laboratories which want to participate to any national monitoring programs in UK to keep their identification potency at high level by the internal quality assurance systems and provides a series of taxonomic workshops and literature to increase their capability. They also performs the external quality control for the marine laboratories by performing the Ring Test using standard specimens on various faunal groups. In the case of Korea, there are few taxonomic expertise in two existing national institutions and so they can't solve the taxonomic problems in marine benthic fauna data. We would like to provide a few necessary suggestions to solve the taxonomic problems in Korean marine biological data in short-terms and long-terms: (1) the identification of all dominant species in marine biological data should be confirmed by taxonomic expertise, (2) all the national research programs should include taxonomic experts, and (3) establishing a private company, like the Korea marine organism identification association (KMOIA), which can perform the QA/QC system on the marine organisms and support all Korean marine laboratories by providing taxonomic literature and species identification workshops to enhance their potency. The last suggestion needs more efforts and time for the establishment of that taxonomic company by gathering the detailed contents and related opinions from diverse stakeholders in Korea.

• Proceedings of the Korean Institute of Intelligent Systems Conference
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• 2003.09a
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• pp.11-15
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• 2003

Amount of biological data information has been increasing exponentially. In order to cope with this bio-information explosion, it is necessary to construct a biological data information integration system. The integration system could provide useful services for bio-application developers by answering general complex queries that require accessing information from heterogeneous bio data sources, and easily accommodate a new database into the integrated systems. In this paper, we analyze architectures and mechanisms of existing integration systems with their advantages and disadvantages. Based on this analysis and user requirement studies, we propose an integration system framework that embraces advantages of the existing systems. More specifically, we propose an integration system architecture composed of a mediator and wrappers, which can offer a service interface layer for various other applications as well as independent biologists, thus playing the role of database management system for biology applications. In other words, the system can help abstract the heterogeneous information structures and formats from the application layer. In the system, the wrappers send database-specific queries and report the result to the mediator using XML. The proposed system could facilitate in silico knowledge discovery by allowing combination of numerous discrete biological information databases.

• Journal of the Korean Institute of Intelligent Systems
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• v.11 no.4
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• pp.302-306
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• 2001

Because face Images have many variations(expression, illumination, orientation of face, etc), there has been no popular method which has high recognition rate. To solve this difficulty, data fusion that fuses various information has been studied. But previous research for data fusion fused additional biological informationUingerplint, voice, del with face image. In this paper, cooperative results from several face image recognition modules are fused without using additional biological information. To fuse results from individual face image recognition modules, we use re-defined mass function based on Dempster-Shafer s fusion theory.Experimental results from fusing several face recognition modules are presented, to show that proposed fusion model has better performance than single face recognition module without using additional biological information.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.53 no.2
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• pp.160-168
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• 2017

In this study, we propose a method of optimal placement technique of artificial reef considering characteristics of sea areas and provide basic data for efficient budget execution. In addition, we will contribute to increasing the economic efficiency by improving the fisheries productivity by suggesting the scientific basis for the policy data and the increase of the catch through the resource creation based on the ecological information about the biology. Especially, in order to establish the effective disposition (optimum separation distance) of artificial reef considering characteristics of biological and engineering factors, it is necessary to review the artificial reef installation management regulations and investigate the biological effects of artificial reef facilities, is needed. Through this, it is expected that the ground data of the direction of the policy promotion will be derived by suggesting the placement condition of the artificial reef complex which can maximize the resource composition effect according to the target fish species.

• Proceedings of the Korean Society of Agricultural Engineers Conference
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• 2005.10a
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• pp.156-163
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• 2005

This study was attempted to provide some fundamental data for safety structrural design of biological production facility. Wind load and snow load, acting on agricultural structures is working more sensitive than any other load. Therefore, wind speed and snow depth according to return periods for design load estimation were calculated by frequency analysis using the weather data(maximum instantaneous wind speed, maximum wind speed, maximum depth of snow cover and fall) of 68 regions in Korea. Equations for estimating maximum instantaneous wind speed with maximum wind speed were developed for all, inland and seaside regions. The results were about the same as the current eqution in general. Design wind speed and snow depth according to return periods were calculated and Local design wind load and snow load depending on return periods were presented together with iso-wind speed and iso-snow depth maps. The calculated design snow depth by maximum depth of snow cover were higher than design snow depth by maximum depth of snow fall. Considering wind speed and snow depth, protected cultivation is very difficult in Ullungdo, Gangwon seaside and contiguity inland regions, and strong structural design is needed in the west-south seaside against wind speed, and structure design of biological production facility in these regions need special consideration.

• BMB Reports
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• v.45 no.3
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• pp.189-193
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• 2012

Cyst formation is a major characteristic of ADPKD and is caused by the abnormal proliferation of epithelial cells. Renal cyst formation disrupts renal function and induces diverse complications. The mechanism of cyst formation is unclear. mIMCD-3 cells were established to develop simple epithelial cell cysts in 3-D culture. We confirmed previously that Mxi1 plays a role in cyst formation in Mxi1-deficient mice. Cysts in Mxi1 transfectanted cells were showed by collagen or mebiol gels in 3-D cell culture system. Causative genes of ADPKD were measured by q RT-PCR. Herein, Mxi1 transfectants rarely formed a simple epithelial cyst and induced cell death. Overexpression of Mxi1 resulted in a decrease in the PKD1, PKD2 and c-myc mRNA relating to the pathway of cyst formation. These data indicate that Mxi1 influences cyst formation of mIMCD-3 cells in 3-D culture and that Mxi1 may control the mechanism of renal cyst formation.