• International Journal of Industrial Entomology and Biomaterials
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• v.30 no.1
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• pp.6-16
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• 2015

This study established the genetic characterisation of 10 microsporidian isolates infecting non-mulberry silkworms (Antheraea assamensis and Samia cynthia ricini) collected from biogeographical forest locations in the State of Assam, India, using PCR-based markers assays: inter simple sequence repeat (ISSR) and random amplified polymorphic DNA (RAPD). A Nosema type species (NIK-1s_mys) was used as control for comparison. The shape of mature microsporidian spores were observed oval to elongated, measuring 3.80 to $4.90{\mu}m$ in length and 2.60 to $3.05{\mu}m$ in width. Fourteen ISSR primers generated reproducible profiles and yielded 178 fragments, of which 175 were polymorphic (98%), while 16 RAPD primers generated reproducible profiles with 198 amplified fragments displaying 95% of polymorphism. Estimation of genetic distance coefficients based on dice coefficients method and clustering with un-weighted pair group method using arithmetic average (UPGMA) analysis was done to unravel the genetic diversity of microsporidians infecting Indian muga and eri silkworm. The similarity coefficients varied from 0.385 to 0.941 in ISSR and 0.083 to 0.938 in RAPD data. UPGMA analysis generated dendrograms with two microsporidian groups, which appear to be different from each other. Based on Euclidean distance matrix method, 2-dimensional distribution also revealed considerable variability among different identified microsporidians. Clustering of these microsporidian isolates was in accordance with their host and biogeographic origin. Both techniques represent a useful and efficient tool for taxonomical grouping as well as for phylogenetic classification of different microsporidians in general and genotyping of these pathogens in particular.

• Journal of Ecology and Environment
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• v.36 no.2
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• pp.131-140
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• 2013

In Korea, many paddy fields in mountainous area have been abandoned because of their low accessibility and rice price and the abandoned paddy terraces have changed into natural lentic wetlands. To understand the relationship between characteristics of environmental conditions and early development of plant community in abandoned paddy terraces, we investigated at four well-maintained abandoned paddy terraces in 3 different climatic zones in Korea. Soil texture of abandoned paddy terraces was mostly kinds of loam and electric conductivity of soil was also similar among abandoned paddy terraces. On the other hand, contents of nitrogen, phosphorus, potassium, sodium, magnesium, and calcium in soil were relatively low and significantly different among abandoned paddy terraces. Water depth was different within sites and inter-sites. Although environmental conditions including climate, soil condition and water depth were different among abandoned paddy terraces, the compositions of plant communities were relatively similar in all abandoned paddy terraces. 55 dominant taxa out of 141 recorded species were commonly recorded over sites and they were mostly perennial obligate wetland plants and facultative wetland plants. 8 taxa out of 55 dominant taxa occurred at all abandoned paddy terraces with over 10% coverage. Several site-specific species occurred at site, which have some area with deep water level. This result indicates that early development of plant community in abandoned paddy terraces of similar water regime is similar in the entire area of Korea even though environmental conditions such as climate, biogeographic history and soil are different.

• International Journal of Industrial Entomology and Biomaterials
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• v.16 no.2
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• pp.75-86
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• 2008

In order to understand geographic genetic variation and relationship among populations of the mason bee (Osmia cornifrons Radoszkowsky), which is used as pollinator for apple tree, we sequenced a portion of mitochondrial (mt) COI gene, which corresponds to "DNA Barcode" region (658 bp) from 81 O. cornifrons individuals collected over eight localities in Korea. The sequence data revealed overall moderate to low genetic diversity within species, with a maximum sequence divergence of 0.76%. Geographically, two haplotypes (BAROC01 and BAROC02) were widespread with a frequency of 82.7%, whereas several haplotypes were found in a locality as a single individual, suggesting that haplotype distribution can be summarized as coexistence of a few widespread haplotypes and several regionally restricted haplotypes. Overall, high rate of per generation female migration (Nm=$1.1{\sim}$infinite) and low level of geographic subdivision ($F_{ST}=0{\sim}0.315$) among localities were characteristic. Although two populations (p < 0.026) were genetically subdivided from the remaining localities, no clear polarity was observed. Taken together, the nature of genetic divergence of the mason bee populations is characterized as one that possessing moderate to low genetic diversity, high gene flow, and wide spread haplotypes with ahigh frequency, concordant with the capability of dispersal in connection with the lack of historical biogeographic barriers.

• Animal cells and systems
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• v.6 no.1
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• pp.45-51
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• 2002

We compared the complete mitochondrial cytochrome b gene sequences of Korean and European cobitids to provide independent evidence for assessment of systematic and biogeographic relationships of species in the genus Cobitis. The data suggested monophyly of the genus Cobitis and the inclusion of Korean Cobitis species within the group having one lamina circularis, a primitive condition. Also, all the phylogenetic analyses using maximum parsimony, maximum likelihood, and neighbor joining methods showed a monophyletic relationship among Cobitis. The basal position of the Caspian C. cf. sibirica reported here reflects the eastern Asiatic origin cf. the European Cobitis and establishes C. cf. sibirica as an independent lineage. The Korean C. pacifica diverged next to C. cf. sibirica in basal group from the genus Cobitis. This result is in agreement with the hypothesized Asiatic origin of some European freshwater fish lineages. The phylogenetic relationships in this study showed a close affinity between C. zanadreai and C. sinensis. Two new species, C. tetralineata and C. pacifica in Korea also are closely related to monophyletic group clustering the type species of the Acanestrinia subgenus (C. elongata) with all the endemic Italian species (C. bilineata and C. zanandreai). This may suggest that the affinity between the Korean and Danubian-Italian imply genetic convergence or genetic plesiomorphic state between allopatric species that are separated for the Miocene. The mtDNA-based phylogeny for the species of the genus Cobitis from Kores and Europe permits phylogenetic assessment of the morphological transitions of Iamina circularis.

• 한국해양학회지
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• v.28 no.3
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• pp.202-211
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• 1993

SEM and LM studies were made to examine the frustule of the marine epizoic diatom Pseudohimantidium pacificum Hustedt & Krasske and to examine the variability of frustule morphology. The length of the apical axis and the transapical axis were similar to other reports. but Number of labiate processes showed a variation. the Number of striae of Korean specimens were similar to those of other regions, but the areolae shape of striae showed elliptical type. Pseudohimantidium pacificum were palnktonic, tychopelagic or epizoic attached to the prosome, the genital segment and abdomen of corycaeus affinis. this species was newly recorded I Korean waters and the biogeographic boundary of this species can therefore be extended to the northern Pacific Ocean.

• International Journal of Industrial Entomology and Biomaterials
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• v.23 no.1
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• pp.155-166
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• 2011

The leaf beetle, $Chrysolina$ $aurichalcea$ (Coleoptera: Chysomelidae), is a pest damaging plants of Compositae. In order to understand the genetic diversity and geographic variation we sequenced a portion of mitochondrial COI gene (658 bp) and complete nuclear internal transcribed spacer 2 (ITS2) of the species collected from seven Korean localities. A total of 17 haplotypes (CACOI01~CACOI17), with the maximum sequence divergence of 3.04% (20 bp) were obtained from COI gene sequence, whereas 16 sequence types (ITS2CA01~ITS2CA16), with the maximum sequence divergence of 2.013% (9 bp) were obtained from ITS2, indicating substantially larger sequence divergence in COI gene sequence. Phylogenetically, the COI gene provided two haplotype groups with a high nodal support (${\geq}87%$), whereas ITS2 provided only one sequence type group with a high nodal support (${\geq}92%$). The result of COI gene sequence may suggest the presence of historical biogeographic barriers that bolstered genetic subdivision in the species. Different grouping pattern between COI gene and ITS2 sequences were interpreted in terms of recent dispersal, reflected in the ITS2 sequence. Finding of unique haplotypes and sequence types only from Beakryeng-Islet population was interpreted as an intact remnant of ancient polymorphism. As more samples are analyzed using further hyper-variable marker, further fruitful inference on the geographic contour of the species might be available.

• Animal Systematics, Evolution and Diversity
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• v.29 no.2
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• pp.99-114
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• 2013

Phylogeographic and feeding ecological studies of seven terrestrial mustelid species (Carnivora, Mustelidae), the Japanese marten Martes melampus, the sable Martes zibellina, the Japanese badger Meles anakuma, the ermine or the stoat Mustela erminea, the Japanese weasel Mustela itatsi, the least weasel Mustela nivalis, and the Siberian weasel Mustela sibirica, representing four biogeographic patterns in the Japanese archipelagos (Hokkaido, Honshu-Shikoku-Kyushu, Tsushima, and Hokkaido-Honshu), were reviewed in order to clarify causes for the faunal assemblage processes of those mustelid species in Japan. Here, three main constraints were extracted as important factors on the mustelid assemblage. First, fundamental evolutionary differences maintained by niche conservatism in each ecologically diversified lineage ("evolutionary constraint") would enable the species to co-occur without any major problem (coexistence among Martes, Meles, and Mustela species). Second, "ecological constraints" would force two closely related species to be allopatric by competitive exclusion (Mu. itatsi and Mu. sibirica) or to be sympatric by resource partitions (Mu. erminea and Mu. nivalis). Third and most importantly, "geological constraints" would allow specific species to be embraced by a particular geographic region, primarily deciding which species co-occurs. The allopatric distribution of two Martes species in Japan would have been established by the strong effect of the geological separation in Tsugaru Strait. Elucidating both phylogeny and ecology of co-existing species in a community assemblage is important to know which species possess distinct lineage and which ecological traits are adapted to local environments, fulfilling the requirement of the field of conservation biology that endemism and adaptation should both be considered. The Japanese archipelagos would, therefore, provide valuable insight into the conservation for small carnivoran species.

• Korean Journal of Ichthyology
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• v.22 no.2
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• pp.115-120
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• 2010

Genetic variation and population structure of the slender bitterling Acheilognathus lanceolatus of Korea (the Han, Geum, Dongjin, Seomjin and Nakdong Rivers) and Japan (the Katsura River) were assessed by amplified fragment length polymorphism (AFLP) analysis. Five combinations of selective primers generated 345~374 DNA fragments, of which 55~131 were polymorphic. The Nakdong River population had the highest genetic diversity and the Han River population had the lowest genetic diversity. Dendrogram based on the distance matrix revealed that individuals from each population consistently clustered together and bifurcated into two distinct clades (or population groups) composed of the Han, Geum, Dongjin and Seomjin River populations and of the Nakdong and Katsura River populations, supported with high bootstrap values. The pairwise genetic differentiation ($F_{ST}$) estimates showed that the six populations were genetically well differentiated (P<0.01). The analysis of molecular variance (AMOVA) after partitioning the six populations into two population groups revealed very strong biogeographic structuring between them with 25.49% of total variance (P<0.01). Taken together, the AFLP markers clearly divided six A. lanceolatus populations into two population groups.

• Korean Journal of Ecology and Environment
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• v.40 no.2
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• pp.303-317
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• 2007

The fish community of small freshwater ecosystems gets easily disturbed by direct or indirect human induced disturbances during the period of urbanization. Urbanization is one of factors that generate changes in stream and influences fish fauna in developed countries. This study was conducted in Busan Metropolitan City from 2001 to 2004. In order to investigate the fish community, the city was divided into 3 parts, eastern, central and western. A total of 3,206 individuals of 46 species from 19 families were collected from 55 sites. The dominant species was Rhynchocypris oxycephalus, whereas Zacco temminckii was the subdominant species. Cluster analysis was conducted using primary freshwater fish species collected from each stream. As a result of the analysis, study sites were well differentiated into 3 parts. Two species of Z. temminckii and R. oxycephalus represented the upper part of the stream and Carassius cuvieri, Acheilognathus rhombeus, Hemiculter eigenmanni and Micropterus salmoides represented the middle and lower parts of the stream. When compared with previous studies, fish community of the eastern part of the Busan city where urbanization is in progress, showed similar patterns to the central part. At the time of the habitat restoration of fish fauna in stream, appropriate selection of fish species should be made through analysis of stream character and biogeographic distribution of fish, and long-term monitoring is also needed for sustaining the management of fish fauna.

• Journal of Korean Society of Forest Science
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• v.104 no.3
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• pp.476-487
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• 2015

This study was conducted to analyze the potential of Baekdu-daegan Mountain System (BDMS) in the Republic of Korea for World Heritage inscription and undertook preliminary global comparative analysis. UNEP WCMC global datasets, World Heritage global gap analyses and thematic studies conducted by IUCN were reviewed to see if the BDMS could have been identified within these as a priority area for World Heritage. With respect to potential Outstanding Universal Value this study found that the case for BDMS was weak. The BDMS lies within biogeographic regions which are already represented on the World Heritage List and at a global scale its natural values do not stand out. It was emphasized that a more fine scale analysis of the values should be undertaken. The BDMS stands out at a global scale in terms of the degree of contiguity between protected areas along its length and the legal and institutional frameworks established in the Republic of Korea. The BDMS has potential for a trans-national and serial properties along the full length of the BDMS, if two Koreas agree to work together.