• Title/Summary/Keyword: BLB

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Combining In Silico Mapping and Arraying: an Approach to Identifying Common Candidate Genes for Submergence Tolerance and Resistance to Bacterial Leaf Blight in Rice

  • Kottapalli, Kameswara Rao;Satoh, Kouji;Rakwal, Randeep;Shibato, Junko;Doi, Koji;Nagata, Toshifumi;Kikuchi, Shoshi
    • Molecules and Cells
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    • v.24 no.3
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    • pp.394-408
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    • 2007
  • Several genes/QTLs governing resistance/tolerance to abiotic and biotic stresses have been reported and mapped in rice. A QTL for submergence tolerance was found to be co-located with a major QTL for broad-spectrum bacterial leaf blight (bs-blb) resistance on the long arm of chromosome 5 in indica cultivars FR13A and IET8585. Using the Nipponbare (japonica) and 93-11 (indica) genome sequences, we identified, in silico, candidate genes in the chromosomal region [Kottapalli et al. (2006)]. Transcriptional profiling of FR13A and IET8585 using a rice 22K oligo array validated the above findings. Based on in silico analysis and arraying we observed that both cultivars respond to the above stresses through a common signaling system involving protein kinases, adenosine mono phosphate kinase, leucine rich repeat, PDZ/DHR/GLGF, and response regulator receiver protein. The combined approaches suggest that transcription factor EREBP on long arm of chromosome 5 regulates both submergence tolerance and blb resistance. Pyruvate decarboxylase and alcohol dehydrogenase, co-located in the same region, are candidate downstream genes for submergence tolerance at the seedling stage, and t-snare for bs-blb resistance. We also detected up-regulation of novel defense/stress-related genes including those encoding fumaryl aceto acetate (FAA) hydrolase, scramblase, and galactose oxidase, in response to the imposed stresses.

Controlling Tyrophagus putrescentiae Adults in LED-Equipped Y-Maze Chamber (LED-Equipped Y-Maze Chamber에 대한 긴털가루응애 성충의 방제효과)

  • Lee, Sang-Min;Lee, Jeong-Bin;Lee, Hoi-Seon
    • Journal of Applied Biological Chemistry
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    • v.58 no.2
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    • pp.101-104
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    • 2015
  • To evaluate four different light-emitting diodes (LEDs) as potential attractants for Tyrophagus putrescentiae adults, attractiveness of blue (470 nm), green (520 nm), yellow (590 nm), and red (625 nm) LEDs were investigated at 20, 40, and 60 lx luminance intensity in LED-equipped Y-maze chamber and compared with the response to black light bulb (BLB), which is used in commercial traps. The BLB, the blue LED, the green LED, the yellow LED, and the red LED did not show the attractive to T. putrescentiae adults. These results suggested that four LEDs tested could not be used for environment-friendly control of T. putrescentiae adults.

Nutritional Characterization of the Uncooked Skipjack Tuna Katsuwonus pelamis Frame as a Basic Resource for Flavor-enriching Concentrates (향미강화농축물 소재로서 비가열 가다랑어(Katsuwonus pelamis) 프레임의 영양학적 품질 특성)

  • Lim, Chi-Won;Sung, Sang Wook;Heu, Min Soo;Kim, Jin-Soo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.50 no.5
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    • pp.473-480
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    • 2017
  • We investigated the nutritional characteristics of the uncooked Skipjack tuna Katsuwonus pelamis frame (U-STF) as a basic resource for preparing flavor-enriching concentrates. The bone rate based on the fish frame (FF) was 53.2% in U-STF, thus lower than those of cooked skipjack tuna frame (C-STF), the uncooked salmon frame (U-SF), and beef leg bone (BLB). The composition of FF had 48.6-58.0% moisture, 18.4-21.3% crude protein, 7.0-15.0% crude lipid, and 12.8-22.1% ash. Compared to the proximate composition of BLB, that of FF was higher moisture and crude protein but lower solids, crude lipids, and ash. The total amino acid contents of FF was 17.6-20.8 g/100 g, which was higher than that of BLB. The levels of calcium and phosphorus of FF were 4.7-8.5 g/100 g and 2.4-4.2 g/100 g, respectively, thus lower than those of BLB. The brix concentration of FF extract was $5.0-8.2^{\circ}$, being highest in U-STF extracts, followed by extracts of U-SF and then extracts of C-STF. Our results indicate that U-STF is an optimal resource for preparing flavor-enriching concentrates.

Effect of LED trap on controlling Sitophilus zeamais and Tribolium castaneum in granary (곡물저장창고에서 LED 트랩을 이용한 어리쌀바구미와 거짓쌀도둑거저리의 실증 유인효과)

  • Song, Ja-Eun;Lee, Sang-Guei;Lee, Hoi-Seon
    • Journal of Applied Biological Chemistry
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    • v.59 no.2
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    • pp.129-132
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    • 2016
  • This study was conducted to evaluate the attraction effects of Sitophilus zeamais and Tribolium castaneum to light emitting diode (LED) trap in granary and compared with the black light bulb (BLB) trap, which is typical used in commercial trap. The red LED trap showed more attractive to S. zeamais and T. castaneum than that of the BLB. Moreover, the external condition of granary was about 1.5 times more attractive to S. zeamais and T. castaneum than the internal condition of granary. These results suggested that red LED trap could be useful to control S. zeamais and T. castaneum in granary.

Bacteriophages: A New Weapon for the Control of Bacterial Blight Disease in Rice Caused by Xanthomonas oryzae

  • Ranjani, Pandurangan;Gowthami, Yaram;Gnanamanickam, Samuel S;Palani, Perumal
    • Microbiology and Biotechnology Letters
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    • v.46 no.4
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    • pp.346-359
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    • 2018
  • Xanthomonas oryzae, a bacterial pathogen causing leaf blight disease (BLB) in rice, can cause widespread disease and has caused epidemics globally, resulting in severe crop losses of 50% in Asia. The pathogen is seed-borne and is transmitted through seeds. Thus, control of BLB requires the elimination of the pathogen from seeds. Concern about environment-friendly organic production has spurred improvements in a variety of biological disease control methods, including the use of bacteriophages, against bacterial plant pathogens. The present study explored the potential of bacteriophages isolated from diseased plant leaves and soil samples in killing the bacterial pathogen in rice seeds. Eight different phages were isolated and evaluated for their bacteriolytic activity against different pathogenic X. oryzae strains. Of these, a phage designated ${\varphi}XOF4$ killed all the pathogenic X. oryzae strains and showed the broadest host range. Transmission electron microscopy of ${\varphi}XOF4$ revealed it to be a tailed phage with an icosahedral head. The virus was assigned to the family Siphoviridae, order Caudovirales. Seedlings raised from the seeds treated with $1{\times}10^8pfu/ml$ of ${\varphi}XOF4$ phage displayed reduced incidence of BLB disease and complete bacterial growth inhibition. The findings indicate the potential of the ${\varphi}XOF4$ phage as a potential biological control agent against BLB disease in rice.

Phototactic behavior 10: phototactic behavioral effects of Plodia interpunctella (Hübner) (Lepidoptera: Pyralidae) adults to different light-emitting diodes of seven wavelengths

  • Park, Jun-Hwan;Lee, Hoi-Seon
    • Journal of Applied Biological Chemistry
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    • v.59 no.2
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    • pp.95-98
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    • 2016
  • Phototactic behavioral responses of the Indian meal moth, Plodia interpunctella ($H{\ddot{u}}bner$), adults were determined to different light-emitting diodes (LEDs) of seven wavelengths, and their behavioral responses were compared to that using a commercial luring lamp (BLB) under laboratory conditions. Based on the attractive responses under optimal light conditions (60 lx luminance intensity and 30 min light exposure time), the green LED ($520{\pm}5nm$) showed the highest attractive rate ($520{\pm}5nm$, 52.2 %), followed by the blue LED ($470{\pm}10nm$, 33.9 %), the yellow LED ($590{\pm}5nm$, 32.2 %), BLB (28.9 %), UV LED (365 nm, 22.8 %), the red LED ($625{\pm}10nm$, 14.5 %), the white LED (450-620 nm, 10.6 %), and IR LED (730 nm, 9.5 %). In addition, the green LED to P. interpunctella adults was approximately 1.81 times more attractive than BLB. These results indicate that the green LED could be most useful for monitoring of P. interpunctella adults.

Diversity of Bacteriophages Infecting Xanthomonas oryzae pv. oryzae in Paddy Fields and Its Potential to Control Bacterial Leaf Blight of Rice

  • Chae, Jong-Chan;Nguyen, Bao Hung;Yu, Sang-Mi;Lee, Ha Kyung;Lee, Yong Hoon
    • Journal of Microbiology and Biotechnology
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    • v.24 no.6
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    • pp.740-747
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    • 2014
  • Bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is a very serious disease in rice-growing regions of the world. In spite of their economic importance, there are no effective ways of protecting rice plants from this disease. Bacteriophages infecting Xoo affect the population dynamics of the pathogen and consequently the occurrence of the disease. In this study, we investigated the diversity, host range, and infectivity of Xoo phages, and their use as a bicontrol agent on BLB was tested. Among the 34 phages that were isolated from floodwater in paddy fields, 29 belonged to the Myoviridae family, which suggests that the dominant phage in the ecosystem was Myoviridae. The isolated phages were classified into two groups based on plaque size produced on the lawn of Xoo. In general, there was a negative relationship between plaque size and host range, and interestingly the phages having a narrow host range had low efficiency of infectivity. The deduced protein sequence analysis of htf genes indicated that the gene was not a determinant of host specificity. Although the difference in host range and infectivity depending on morphotype needs to be addressed, the results revealed deeper understanding of the interaction between the phages and Xoo strains in floodwater and damp soil environments. The phage mixtures reduced the occurrence of BLB when they were treated with skim milk. The results indicate that the Xoo phages could be used as an alternative control method to increase the control efficacy and reduce the use of agrochemicals.

Disease Incidence, Yield and Quality Comparisons among Rice Varieties with Different Resistance to Bacterial Leaf Blight (벼 흰잎마름병 저항성 차이에 따른 병 발생정도와 수량 및 미질의 비교)

  • Noh, Tae-Hwan;Kim, Ki-Young;Lee, Du-Ku;Shim, Hyeong-Kwon;Kang, Mi-Hyung;Park, Jong-Chul
    • Research in Plant Disease
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    • v.14 no.3
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    • pp.171-175
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    • 2008
  • The influence of rice bacterial leaf blight (BLB) disease incidence on yield and quality of Nampyung, Gang-baek and Iksan493 was investigated in three areas, Gimje, Yeongam and Jangheung, frequently found BLB infested rice. The infection rate of Nampyung, susceptible to BLB disease, was higher ($23{\sim}93%$) than Gang-baek ($2{\sim}15%$) and Iksan493 ($2{\sim}6%$), have resistant gene Xa7 and xa5, respectively. BLB disease incidence was severely found in Gimj and then yield of Nampyung was reduced 65% (352 kg/10a) compared to Iksan493 (540 kg/10a) due to the decrease in the ripen grain filling, brown/rough ratio and 1,000 grain weight. There was no difference of rice yield among Nampyung, Gangbaek and Iksan493 in Yeongam and Jangheung. The occurrence time of disease in Yeongam and Jangheung was later than Gimje and BLB disease was less infected in these areas. BLB infected rice grain showed inferior grain appearance and taste index to sound grain. independent of rice with resistant gene. In Yeongam and Jangheung, Gangbaek and Iksan493 cultivated showed lower ratio of white color to belly than Nampyung. Iksan493 showed better grain appearance and lower ratio of white core to belly than Gangbaek. In protein content of rice grain, the range of Gangbaek and Iksan493 was $6.9{\sim}9.8%$, but Nampyung showed unstable ranged from undetermined to 9.0%.

Atypical Fruiting Structure Formation of White Fruitbody-Forming Isolates in Ganoderma lucidum (백색자실체를 형성하는 영지 균주의 비정형(非定型) 자실체 구조의 형성)

  • Seo, Geon-Sik
    • The Korean Journal of Mycology
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    • v.27 no.5 s.92
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    • pp.322-327
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    • 1999
  • Five white fruitbodies of Ganoderma lucidum found from two different mushroom farms, and the characteristics of atypical fruiting structure formation of these strains were described. The white fruitbodies were spontaneously generated on Quercus-log during the cultivation. They did not differentiate to the normal fruitbodies with pileus, hymenium, stipe and coloration, and fruitbodies remained non-laccateed even after 3 months. Dikaryotic mycelia isolated from the five white fruitbodies differed from wild-type strains in the mycelial growth rate, colony color, and the capacity of atypical fruiting structure (AFS) formation on agar media. These white mutants readily induced brown colored AFSs on the colonies under ventilation and illumination conditions. Both isolates Gl-010 and Gl-011 that were obtained from a normal and white fruitbody, respectively, did not form AFSs in the dark and/or under black light blue (BLB) light illumination, but induced under the visible light. They required dim light for the AFS formation, and the AFS formation was inhibited up to $0.5{\mu}mol\;m^{-2}\;S^{-1}$ in light intensity. However, the other four isolates induced AFSs even in the dark and BLB illumination, although their parent strain, isolate Gl-030, did not form AFSs under any light conditions. The monokaryotic mycelia derived from basidiospores of the AFSs of the white mutants were compatible with the original culture (dikaryon) on a dual culture.

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