• 제목/요약/키워드: BLAST Analysis

검색결과 985건 처리시간 0.026초

Expression of hpa1 Gene Encoding a Bacterial Harpin Protein in Xanthomonas oryzae pv. oryzae Enhances Disease Resistance to Both Fungal and Bacterial Pathogens in Rice and Arabidopsis

  • Choi, Min-Seon;Heu, Sunggi;Paek, Nam-Chon;Koh, Hee-Jong;Lee, Jung-Sook;Oh, Chang-Sik
    • The Plant Pathology Journal
    • /
    • 제28권4호
    • /
    • pp.364-372
    • /
    • 2012
  • Xanthomonas oryzae pv. oryzae causing bacterial leaf blight disease in rice produces and secretes Hpa1 protein that belongs to harpin protein family. Previously it was reported that Hpa1 induced defense responses when it was produced in tobacco. In this study, we expressed hpa1 gene in rice and Arabidopsis to examine the effects of Hpa1 expression on disease resistance to both fungal and bacterial pathogens. Expression of hpa1 gene in rice enhanced disease resistance to both X. oryzae pv. oryzae and Magnaporthe grisea. Interestingly, individual transgenic rice plants could be divided into four groups, depending on responses to both pathogens. hpa1 expression in Arabidopsis also enhanced disease resistance to both Botrytis cineria and Xanthomonas campestris pv. campestris. To examine genes that are up-regulated in the transgenic rice plants after inoculation with X. oryzae pv. oryzae, known defense-related genes were assessed, and also microarray analysis with the Rice 5 K DNA chip was performed. Interestingly, expression of OsACS1 gene, which was found as the gene that showed the highest induction, was induced earlier and stronger than that in the wild type plant. These results indicate that hpa1 expression in the diverse plant species, including monocot and dicot, can enhance disease resistance to both fungal and bacterial plant pathogens.

Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice

  • Yoo, Seung Jin;Kim, Su-Hyun;Kim, Min-Jeong;Ryu, Choong-Min;Kim, Young Cheol;Cho, Baik Ho;Yang, Kwang-Yeol
    • The Plant Pathology Journal
    • /
    • 제30권2호
    • /
    • pp.168-177
    • /
    • 2014
  • Plant has possessed diverse stress signals from outside and maintained its fitness. Out of such plant responses, it is well known that mitogen-activated protein kinase (MAPK) cascade plays important role in wounding and pathogen attack in most dicot plants. However, little is understood about its role in wounding response for the economically important monocot rice plant. In this study, therefore, the involvement of MAPK was investigated to understand the wounding signaling pathway in rice. The OsMPK1 was rapidly activated by wounding within 10 min, and OsMPK1 was also activated by challenge of rice blast fungus. Further analysis revealed that OsMKK4, the upstream kinase of OsMPK1, phosphorylated OsMPK1 by wounding in vivo. Furthermore, OsMPK1 directly interacted with a rice defense-related transcription factor OsWRKY53. To understand a functional link between MAPK and its target transcription factor, we showed that OsMPK1 activated by the constitutively active mutant $OsMKK4^{DD}$ phosphorylated OsWRKY53 in vitro. Taken together, components involving in the wounding signaling pathway, OsMKK4-OsMPK1-OsWRKY53, can be important players in regulating crosstalk between abiotic stress and biotic stress.

Roles of Forkhead-box Transcription Factors in Controlling Development, Pathogenicity, and Stress Response in Magnaporthe oryzae

  • Park, Jaejin;Kong, Sunghyung;Kim, Seryun;Kang, Seogchan;Lee, Yong-Hwan
    • The Plant Pathology Journal
    • /
    • 제30권2호
    • /
    • pp.136-150
    • /
    • 2014
  • Although multiple transcription factors (TFs) have been characterized via mutagenesis to understand their roles in controlling pathogenicity and infection-related development in Magnaporthe oryzae, the causal agent of rice blast, if and how forkhead-box (FOX) TFs contribute to these processes remain to be characterized. Four putative FOX TF genes were identified in the genome of M. oryzae, and phylogenetic analysis suggested that two of them (MoFKH1 and MoHCM1) correspond to Ascomycota-specific members of the FOX TF family while the others (MoFOX1 and MoFOX2) are Pezizomycotina-specific members. Deletion of MoFKH1 (${\Delta}Mofkh1$) resulted in reduced mycelial growth and conidial germination, abnormal septation and stress response, and reduced virulence. Similarly, ${\Delta}Mohcm1$ exhibited reduced mycelial growth and conidial germination. Conidia of ${\Delta}Mofkh1$ and ${\Delta}Mohcm1$ were more sensitive to one or both of the cell cycle inhibitors hydroxyurea and benomyl, suggesting their role in cell cycle control. On the other hand, loss of MoFOX1 (${\Delta}Mofox1$) did not show any noticeable changes in development, pathogenicity, and stress response. Deletion of MoFOX2 was not successful even after repeated attempts. Taken together, these results suggested that MoFKH1 and MoHCM1 are important in fungal development and that MoFKH1 is further implicated in pathogenicity and stress response in M. oryzae.

Efficient Target-Site Assay of Chemicals for Melanin Biosynthesis Inhibition of Magnaporthe grisea

  • Kim, Jin-Cheol;Son, Mi-Jung;Kim, Heung-Tae;Park, Gyung-Ja;Hahn, Hoh-Gyu;Nam, Kee-Dal;Cho, Kwang-Yun
    • The Plant Pathology Journal
    • /
    • 제16권3호
    • /
    • pp.125-129
    • /
    • 2000
  • A rapid and efficient assay to determine melanin biosynthesis inhibition of Magnaporthe grisea, a causal agent of the rice blast, by chemicals was developed. Wells in 24-well plates were loaded with spore suspension of the fungus and three known melanin biosynthesis inhibitors of KC10017, tricyclazole, and carpropamid. Subsequent color changes of mycelia and culture media in the wells were observed 7 days after incubation. The wells treated with KC10017 (an inhibitor of polyketide synthesis step and/or pentaketide cyclization step) became colorless, whereas tricyclazole (an inhibitor of 1, 3, 8-trihydroxynaphthalene reductase) or carpropamid (an inhibitor of scytalone dehydratase)-treated wells exhibited red color. They did not show any inhibitory effect on fungal growth. The inhibition of reaction steps prior to 1, 3, 6, 8-tetrahydroxynaphthalene formation was easily determined by colorless medium and mycelia. However, it was impossible to distinguish between inhibition of reduction steps and inhibition of dehydration steps by colors of the cultures. It was accomplished through HPLC analysis of the melanin biosynthesis-involving pentaketide metabolites accumulated by the inhibitors. Through screening of a number of synthetic chemicals using the in vitro assay, we could find a novel chemical group of melanin biosynthesis inhibitor.

  • PDF

Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice

  • Wu, Jingni;Kim, Sang Gon;Kang, Kyu Young;Kim, Ju-Gon;Park, Sang-Ryeol;Gupta, Ravi;Kim, Yong Hwan;Wang, Yiming;Kim, Sun Tae
    • The Plant Pathology Journal
    • /
    • 제32권6호
    • /
    • pp.552-562
    • /
    • 2016
  • Pathogenesis-related proteins play multiple roles in plant development and biotic and abiotic stress tolerance. Here, we characterize a rice defense related gene named "jasmonic acid inducible pathogenesis-related class 10" (JIOsPR10) to gain an insight into its functional properties. Semi-quantitative RT-PCR analysis showed up-regulation of JIOsPR10 under salt and drought stress conditions. Constitutive over-expression JIOsPR10 in rice promoted shoot and root development in transgenic plants, however, their productivity was unaltered. Further experiments exhibited that the transgenic plants showed reduced susceptibility to rice blast fungus, and enhanced salt and drought stress tolerance as compared to the wild type. A comparative proteomic profiling of wild type and transgenic plants showed that overexpression of JIOsPR10 led to the differential modulation of several proteins mainly related with oxidative stresses, carbohydrate metabolism, and plant defense. Taken together, our findings suggest that JIOsPR10 plays important roles in biotic and abiotic stresses tolerance probably by activation of stress related proteins.

Agrobacterium에 의한 식물형질전환에 관여하는 Arabidopsis RAT3 유전자의 분리와 분석 (Molecular cloning of the Arabidopsis gene rat3 that is involving in the Agobacterium-mediated planttransformation)

  • 남재성;양보경;김도훈;정순재;이영병
    • 생명과학회지
    • /
    • 제11권5호
    • /
    • pp.423-431
    • /
    • 2001
  • Agrobacterium에 의한 식물형질전환은 가장 일반적으로 많은 사용되는 식물형질전환 기술이냐 이 과정에서 관여하는 식물 유전자들에 대한 관여하는 식물 유전자들에게 대한 연구는 거의 전무한 상태다. 본 연구는 Agrobacterium의 감염에 저항성을 보이는 새로운 돌연변이들의 분리와 분석 연구에 연속하여 Agrobacterium에 의한 식물형질전환에 관여하는 Arabidopsis RAT3 유전자의 cDNA와 gemonic clone을 plasmid rescue 기술을 이용하여 분리하였다. 염기서열 분석결과, 매우 유사한 2개의 유전자가 (RAT3-1과 RAT3-2)약 600bp 간격을 두고 연속하여 존재함을 밝혔다. 그중 RAT3-1 이 mutagen으로 사용된 T-DNA에 의해 손상을 받아 rat3 돌연변이 형질이 유도되었다. RAT3 유전자의 단백질의 분자량은 15 kDa 정도이며 아미노 밀단에 분비를 위한 signal peptide를 가지며 단백질이 전체적인 매우 친수성인 것으로 미루어 세포막 밖으로 분비될 것으로 생각된다. 이들 유전자의 정확한 생물학적 기능에 대한 연구들이 수행 중이며, 이러한 기초연구는 식물형질전환 기술의 개발에 기여할 것이다.

  • PDF

A STUDY ON THE CORRELATION BETWEEN IMPLANT STABILITY VALUES AND INITIAL INSERTION TORQUE

  • Lee Jong-Hyuk;Yang Jae-Ho
    • 대한치과보철학회지
    • /
    • 제44권3호
    • /
    • pp.314-324
    • /
    • 2006
  • Statement of problem. Osseointegration is important mechanism of dental implant but it is not easy to evaluate. Indirect measurement is non-invasive and clinically applicable but they need more study about correlation between indirect values and degree of osseointegration. Purpose. The aims of this study were to evaluate the coefficient of correlation between indirect measurement and direct measurement under different healing time, and assessment of effect of initial insertion torque to the implant stability. Material and Methods. 20 rabbits received 3 implants on each side of tibia. Three kinds of implants (machined surface implant, Sandblasted with Large grit and Acid etched implant, Resorbable Blast Media treated implant) were used. During the surgery implant insertion torque were measured with $Osseocare^{TM}$. After the 1, 4, 8, 12 weeks of healing time, animals were sacrificed and stability values (Implant Stability Quotient with $Osstell^{TM}$, removal torque with torque gauge) were measured. Results. The Bone quality of rabbit tibia was classified into 2 groups according to the insertion torque. Resonance frequency analysis (ISQ) and removal torque showed positive correlation until $4^{th}$ week (r=0.555, p=0.040). After $8^{th}$ week (r=0.011, p=0.970) the correlation became weak and it turned negative at $12^{th}$ week (r=-0.074, p=0.801). Insertion torque and ISQ showed changing correlation upon the healing time ($1^{st}$ week: r=0.301, p=0.033, $4^{th}$ week: r=-0.429, p=0.018, $8^{th}$ week: r=0.032, p=0.865, $12^{th}$ week: r=-0.398, p=0.029). Insertion torque and removal torque has positive correlation but it was not statistically significant ($1^{st}$ week: r=0.410, p=0.129, $4^{th}$ week: r=0.156, p=0.578, $8^{th}$ week: r=0.236, p=0.398, $12^{th}$ week: r=0.260, p=0.350). Conclusion. In this study, bone quality may affect the degree of osseointegration positively during healing time and correlation between ISQ and degree of osseointegration can be different according to the healing time and bone quality.

Morphological and Molecular Characteristics of Anisakis typica Larvae in Two Species of Threadfin Bream, Nemipterus hexodon and N. japonicus, from the Gulf of Thailand

  • Tunya, Rattanachai;Wongsawad, Chalobol;Wongsawad, Pheravut;Chai, Jong-Yil
    • Parasites, Hosts and Diseases
    • /
    • 제58권1호
    • /
    • pp.15-25
    • /
    • 2020
  • The third stage larvae (L3) of Anisakis typica were detected in 2 species of threadfin bream, Nemipterus hexodon and N. japonicus, from the Gulf of Thailand, and were morphologically and molecularly characterized. Total 100 threadfin breams, 50 Nemipterus hexodon and 50 N. japonicus, were examined with naked eyes after the opening of abdominal cavity with scissors. Almost all infected larvae remained alive and active even the fish were transported for 1-2 days. Anisakid larvae were exclusively distributed in the body cavity and rarely in the liver. The prevalence of A. typica L3 were 68.0% and 60.0% in N. hexodon and N. japonicus and their infection intensities were 3.5 and 4.2 per fish infected each. Morphological and morphometric analysis were performed by viewing specimens under both a light microscope and a scanning electron microscope. Interestingly, the protruded mucron of Anisakis typica under SEM showed a distinct cylindrical shape that differed from the cone shape of A. simplex. The protruded mucron could be used to identify A. typica L3 larvae in the future. A comparison of the ITS1-5.8S-ITS2 rDNA nucleotide sequences of these species revealed high blast scores with A. typica. Conclusively, it was confirmed that A. typica L3 are prevalent in threadfin breams from the Gulf of Thailand, and their morphological and molecular characters are something different from those of other anisakid larvae, including A. simplex and A. pegreffii.

흑연 노즐목 삽입재의 삭마율에 미치는 영향 인자 연구 (A Study on the Influence Factors for Ablation Rate of Graphite Nozzle Throat Insert)

  • 함희철;강윤구;서상규
    • 한국추진공학회지
    • /
    • 제21권4호
    • /
    • pp.12-20
    • /
    • 2017
  • 고체 로켓 추진기관의 노즐목 삽입재에 적용하는 흑연의 삭마율 특성을 분석하였다. 지상연소시험은 3 종류의 일반적인 노즐형태를 갖는 추진기관을 사용하여 수행하였다. 즉, De-Laval 형태, 토출관 형태, 내삽 형태이다. 10 종류의 서로 다른 형상의 추진기관에 다양한 추진제를 적용하였고, 노즐목 위치에 흑연을 적용하여 총 48회의 연소시험을 수행하였다. 분석결과 흑연의 삭마율은 연소실 평균압력이 상승함에 따라, 산화제 몰분율이 증가함에 따라 증가함을 알 수 있었다. 또한, 연소실 압력, 산화제 몰분율, 노즐목 크기 등 3 가지의 영향인자를 고려한 노즐목 삭마율 관계식을 유도하였으며, 측정치와 비교한 결과 ${\pm}0.10mm/s$ 이내로 일치하였다.

제주도 토양에서 효모의 분리 및 동정 (Isolation and Identification of Yeasts from Jeju Island Soils)

  • 한상민;배상민;한재원;김지윤;이종수;김하근
    • 한국균학회지
    • /
    • 제43권4호
    • /
    • pp.267-271
    • /
    • 2015
  • 제주도 토양에 서식하는 야생효모들의 분포 특성을 조사하기 위해, 동부지역 7곳, 서부지역 5곳에서 토양을 채취하여 효모를 분리한 후, 콜로니 PCR에 의해 증폭된 26S rDNA D1/D2 지역의 염기서열을 결정하여 BLAST를 이용하여 효모를 동정하였다. 동부지역에서 채집한 토양에서 12종에 속하는 20균주를, 서부지역에서 6종에 속하는 13균주를 분리하였다. 분리되는 효모 종은 강수량 차이를 보이는 지역에 따라서 현저한 차이가 있는 것을 알 수 있었다.