• 한국미생물·생명공학회지
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• 제47권4호
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• pp.473-486
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• 2019

In the aquatic environment, microorganisms are predominantly organized as biofilms. Biofilms are formed by the aggregation of microbial cells and are surrounded by a matrix of extracellular polymeric substances (EPS) secreted by the microbial cells. Biofilms are attached to various surfaces, such as the living tissues, indwelling medical devices, and piping of the industrial potable water system. Biofilms formed from a single species has been extensively studied. However, there is an increased research focus on multispecies biofilms in recent years. It is important to assess the microbial mechanisms underlying the regulation of multispecies biofilm formation to determine the drinking water microbial composition. These mechanisms contribute to the predominance of the best-adapted species in an aquatic environment. This review focuses on the interactions in the multispecies biofilms, such as coaggregation, co-metabolism, cross-species protection, jamming of quorum sensing, lateral gene transfer, synergism, and antagonism. Further, this review explores the dynamics and the factors favoring biofilm formation and pathogen transmission within the drinking water distribution systems. The understanding of the physiology and biodiversity of microbial species in the biofilm may aid in the development of novel biofilm control and drinking water disinfection processes.

• Fisheries and Aquatic Sciences
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• 제17권2호
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• pp.215-222
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• 2014

To explore marine microorganisms with medical potential, we isolated and identified marine bacteria from floats, marine algae, animals, and sponges collected from Jeju Island, Korea. We isolated and identified 21 different strains from the marine samples by 16S rRNA analysis, cultured them in marine broth, and extracted them with ethyl acetate (EtOAc) to collect secondary metabolite fractions. Next, we evaluated their anti-oxidative and anti-inflammatory effects. Among the 21 strains, the secondary metabolite fraction of Bacillus badius had both strong antioxidant and anti-inflammatory activity, and thus was selected for further experiments. An antioxidant compound detected from the secondary metabolite fraction of B. badius was purified by preparative centrifugal partition chromatography (n-hexane:EtOAc:methanol:water, 4:6:4:6, v/v), and identified as diolmycin A2. Additionally, diolmycin A2 strongly inhibited nitric oxide production. Thus, we successfully identified a significant bioactive compound from B. badius among the bacterial strains collected from Jeju Island.

• 한국수산과학회지
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• 제46권6호
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• pp.675-681
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• 2013

There have been many studies on biofilter process regarding satisfactory water quality and the operational conditions of Recirculating Aquaculture Systems (RAS). For effective nitrification processes, it is necessary to dynamically identify and apply nitrifying microorganisms. Physical, chemical and biological processes concerning biofilms can be applied and influential factors including substrate, dissolved oxygen concentrations, organic matter, temperature, pH, alkalinity, salinity and mixing velocity intensity need to be considered. Also, designing and managing the process based on the dynamic interpretation of these factors are prerequisites for engineering applications of the biofilter process. This paper draws on current literature on the kinetics of nitrification of biofilms in the biofilter process. Influential factors for nitrification are crucial during the biofilter process and are expected to be critical in informing the design and operation of recirculating aquaculture systems.

• Fisheries and Aquatic Sciences
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• 제3권1호
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• pp.64-70
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• 2000

DNA probes for the l6S rRNA have been designed for the detection of Edwardsiella tarda. In order to accomplish this purpose, the l6S rRNA gene from E. tarda has been cloned and sequenced. Two highly feasible oligonucleotide probe sites have been determined by the database analysis programs presented by PCGENE and BLAST. These two probes have been evaluated by slot blot hybridization analysis. Hetero- and homo-trimeric templates have been synthesized using these two probe sites. The templates have been further multimerized by PCR to generate between 150 and 300 bp long DIG-11-dUTP labeled probes. Unlike 3' end labeled oligonucleotide probes or templates, multimerized probes showed no cross­hybridization in the given experimental condition. Furthermore, a significant increase in sensitivity has been observed with these probes. This method, we presented here, may be useful for the designing of probes for the detection of other fish pathogenic microorganisms also.

• Fisheries and Aquatic Sciences
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• 제4권1호
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• pp.1-9
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• 2001

This paper describes a procedure extracting feature vector of a target cell more precisely in the case of identifying specified cell. The classification of object type is based on feature vector such as area, complexity, centroid, rotation angle, effective diameter, perimeter, width and height of the object So, the feature vector plays very important role in classifying objects. Because the feature vectors is affected by noises and holes, it is necessary to remove noises contaminated in original image to get feature vector extraction exactly. In this paper, we propose the following method to do to get feature vector extraction exactly. First, by Otsu's optimal threshold selection method and morphological filters such as cleaning, filling and opening filters, we separate objects from background an get rid of isolated particles. After the labeling step by 4-adjacent neighborhood, the labeled image is filtered by the area filter. From this area-filtered image, feature vector such as area, complexity, centroid, rotation angle, effective diameter, the perimeter based on chain code and the width and height based on rotation matrix are extracted. To prove the effectiveness, the proposed method is applied for yeast Zygosaccharomyces rouxn. It is also shown that the experimental results from the proposed method is more efficient in measuring feature vectors than from only Otsu's optimal threshold detection method.

• Fisheries and Aquatic Sciences
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• 제18권1호
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• pp.7-11
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• 2015

The influence of spice (cinnamon, allspice, black pepper)-oil extract on canned seafood quality was studied. During the processing of canned seafood, the substitution of spice-oil extract for vegetable oil (refined sunflower, corn, soybean and olive oil) resulted in a decrease in the heat resistance of spore microorganisms, making it possible to reduce the duration of sterilization for canned food to 5-10 min at $115^{\circ}C$. This reduction in the sterilization duration of canned seafood with spice-oil extract inhibited residual microflora in the product, thus reducing the deleterious effect of heating on the main food compounds while preserving protein digestibility.

• Fisheries and Aquatic Sciences
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• 제17권3호
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• pp.275-290
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• 2014

The marine ecosystem represents a vast and dynamic array of bio-resources attributed with its huge diversity and considered as potential untapped reservoirs for the development of functional foods for future health markets. Basically, marine microorganisms, sponges, algae, invertebrates such as crustaceans and mollusks along with marine fish species can be considered as marine bio-resources, which can be utilized to obtain different health benefits for humans, directly or after processing. Most of the bio-molecular components, such as lipids and proteins from these marine bio-resources, which can be extracted in large scale using the modern and advanced biotechnological approaches, are suitable drug candidates for the pharmaceutical industry as well as functional food ingredients for the food industry. Moreover, the furtherance of high throughput molecular biological techniques has already been incorporated with identification, mining and extraction of molecular components from marine bio-resources. In this review, potential marine bio-resources with respect to their extractable bio-molecules were described in details, while explaining the present and prospective methods of identification and extraction, which are integrated with advanced techniques in modern biotechnology. In addition, this provides an overview of future trends in marine biotechnology.

• 한국잡초학회지
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• 제18권2호
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• pp.85-94
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• 1998

Herbicides play a very important role in modern agriculture. However, the herbicide applied to the agricultural field may accumulate in the field, converting the advantages to environment pollution. Many small animals in the ecosystem such as alderfly, earthworm, butterfly, loach, frog, firefly, some birds and aquatic organisms have been known to disappear gradually. In addition, several behavior of herbicides including adsorption by soil, movement by water, photodecomposition, volatilization to air, absorption by plant, metabolism by soil microorganisms and so on, are proceeded while the herbicide remained in the environment. In this review, fate and behavior of herbicides in the environment and their effect on ecosystem after their application are focused on four aspects : the first is the absorption and metabolism of herbicides by plant; the second is the residues of herbicides in soil and water environments: the third is the accumulation and release of herbicides in aquatic organisms and the fourth is the translocation of herbicides in model agricultural ecosystem. Many factors may affect the behavior and fate of herbicides after their application, climatic conditions and soil properties seem to be the most important. Therefore, the fate and behavior of herbicide in Taiwan, located on subtropical region, may differ from those in Korea.

• Fisheries and Aquatic Sciences
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• 제25권10호
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• pp.525-536
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• 2022

Photosynthetic bacteria (PSB) attract considerable interest as useful microorganisms; nevertheless, a generalized culture technique has not been previously reported owing to difficulty in their cultivation. Therefore, a simple culture technique suitable for public use was investigated. Among the PSB tested, the strain Rhodobacter azotoformans EBN-7 was the most suitable for scale-up production because it showed the highest specific growth rate (0.20 h^-1) on basal medium. In scale-up cultivation (500 L), R. azotoformans EBN-7 showed 4.50 × 10¹⁰ colony-forming units mL^-1 (number of viable cells), dry cell weight of 26.8 g/L, and a specific growth rate of 0.15 h^-1. Cultivation using this final culture broth (as seed culture) in a 15 L simple reactor was successful, with maintenance of cell activity evident. For use as seed culture, the maximum allowable preservation period of R. azotoformans EBN-7 at 4℃ was 3 months. When R. azotoformans EBN-7 cultivated in a simple technique was applied to shrimp aquaculture water, NH₄⁺-N was reduced from 0.61 mg/L to 0.24 mg/L (by 60.7%) in 4 days in comparison with the control. Thus, this simple culture technique using R. azotoformans EBN-7 has the potential for a good removal efficiency of NH₄⁺-N, making seed culture easier and suitable for public use.

• 생명과학회지
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• 제28권10호
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• pp.1179-1185
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• 2018

최근 괭생이모자반(Sargassum horneri)은 제주의 해안가와 해변, 연근해 양식장 등 매년 대량으로 속출되어 인근 양식업자 및 주민에게 막대한 피해를 주고 있는 추세이다. 본 연구에서는 제주 인근 연안으로 흘러 들어온 괭생이 모자반에 서식하고 있는 미생물의 다양성을 탐색하고 동정을 통한 미생물의 기능을 파악함으로써 생태학적 문제에 관한 기초자료를 제공하고자 하였다. Proteobacteria는 분리 된 균주 중 88%를 차지한 우점문으로 ${\alpha}-proteobacteria$강은 6속 10종으로 Pseudorhodobacter속이 40%를 차지하고 Paracoccus속 20%, Rhizobium, Albirhodobacter, Skermanella 및 Novosphingobium 속은 각각 10%를 차지했다. ${\beta}-proteobactera$강은 5속 10종으로 Hydrogenophaga속이 50%, Azoarcus 20%, 나머지 Oxalicibacterium, Duganella, Xenophilus속은 각각 10%를 차지했다. ${\gamma}-proteobacteria$강은 13속 57종으로 Proteobacteria문에서 74%로 우점강을 차지했고, Shewanella는 23%, Pseudomonas속 12%, Cobetia 19%, Rahnella, Vibrio 및 Serratia속은 4%, 나머지 Rheinheimera, Raoultella, Pantoea, Acinetobacter, Moraxella 및 Psychrobacter속은 2%를 차지했다. Actinobacteria는 1속 2종으로 Gordonia와 Nocardioides속이 각각 50%를 나타냈다. Bacteroidetes문은 3속 5종으로 Lacihabitans, Mariniflexile속은 33%, 나머지 Dyadobacter, Cellulophaga와 Ferruginibacter속은 11%를 차지했다.