• Bulletin of the Korean Chemical Society
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• 제28권9호
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• pp.1523-1530
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• 2007

The first reduction peak of the cyclic voltammogram (CV) for sulfur reduction in dimethyl sulfoxide has been studied using time resolved Fourier transform electrochemical impedance spectroscopic (FTEIS) analysis of small potential step chronoamperometric currents. The FTEIS analysis results reveal that the impedance signals obtained during short potential steps can be resolved into electron transfer reactions of two different time constants in a high frequency region. The FTEIS method provides snap shots of impedance profiles during an earlier phase of the reaction, leading to time resolved EIS measurements. Our results obtained by the FTEIS analysis are consistent with a series of electron transfer and chemical equilibrium steps of a complex reaction, making up an ECE (electrochemical-chemical-electrochemical) mechanism postulated from the results of computer simulation.

• Asian Pacific Journal of Cancer Prevention
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• 제17권3호
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• pp.1571-1576
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• 2016

Alteration of the acetylation status of chromatin and other non-histone proteins by HDAC inhibitors has evolved as an excellent epigenetic strategy in treatment of cancers. The present study was sought to identify compounds with positive pharmacological profiles targeting HDAC1. Analogues of Vorinostat synthesized by Cai et al, 2015 formed the test compounds for the present pharmacological evaluation. Hydroxamte analogue 6H showed superior pharmacological profile in comparison to all the compounds in the analogue dataset owing to its better electrostatic interactions and hydrogen bonding patterns. In order to identify compounds with even better high affinity and pharmacological profile than 6H and Vorinostat, virtual screening was performed. A total of 83 compounds similar to Vorinostat and 154 compounds akin to analogue 6H were retrieved. SCHEMBL15675695 (PubCid: 15739209) and AKOS019005527 (PubCid: 80442147) similar to Vorinostat and 6H, were the best docked compounds among the virtually screened compounds. However, in spite of having good affinity, none of the virtually screened compounds had better affinity than that of 6H. In addition SCHEMBL15675695 was predicted to be a carcinogen while AKOS019005527 is Ames toxic. From, our extensive analysis involving binding affinity analysis, ADMET properties predictions and pharmacophoric mappings, we report Vorinostat hydroxamate analogue 6H to be a potential candidate for HDAC inhibition in treatment of cancers through an epigenetic strategy.

• Structural Engineering and Mechanics
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• 제62권5호
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• pp.519-535
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• 2017

In this article, static analysis of a magneto-electro-elastic (MEE) beam subjected to various thermal loading and boundary conditions has been investigated. Influence of pyroeffects (pyroelectric and pyromagnetic) on the direct quantities (displacements and the potentials) of the MEE beam under different boundary conditions is studied. The finite element (FE) formulation of the MEE beam is developed using the total potential energy principle and the constitutive equations of the MEE material taking into account the coupling between elastic, electric, magnetic and thermal properties. Using the Maxwell electrostatic and electromagnetic relations, variation of stresses, displacements, electric and magnetic potentials along the length of the MEE beam are investigated. Effect of volume fractions, aspect ratio and boundary conditions on the direct quantities in thermal environment has been determined. The present investigation may be useful in design and analysis of magnetoelectroelastic smart structures and sensor applications.

• 대한조선학회논문집
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• 제41권1호
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• pp.15-22
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• 2004

Twin-skeg type stern shapes are recently adopted for very large commercial ships. However it is difficult to apply a CFD system to a hull form having twin-skeg, since grid topology around a twin-skeg type stern is more complicated than that of a conventional single-screw ship, or of an open-shaft type twin-screw ship with center-skeg. In the present study a surface mesh generator and a multi-block field grid generation program have been developed for twin-skeg type stern. Furthermore, multi-block flow solvers are utilized for potential and viscous flow analysis around a twin-skeg type stern The present computational system is applied to a 15,000TEU container ship with twin-skeg to prove the applicability. Wave profiles and wake distribution are calculated using the developed flow analysis tools and the results are compared with towing tank measurements.

• 한국압력기기공학회 논문집
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• 제11권2호
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• pp.61-67
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• 2015

3D FEM modeling based on 3D CAD data has been performed to evaluate the efficiency of CP system in a real operating nuclear power plant. The results of it successfully produced sophisticated profiles of electrolytic potential and current distributions in the soil of an interested area. This technology is expected to be a breakthrough for detection technology of damages on buried pipes when it comes into combining with a brand of area potential earth current (APEC) and ground penetrated radar (GPR) technologies. 2D current distribution and 2D current vectors on the earth surface from the APEC survey will be used as boundary conditions with exact 3D geometry data resulting in visualization of locations and extents of corrosion damages on the buried pipes in nuclear power plants.

• BMB Reports
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• 제56권6호
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• pp.341-346
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• 2023

Acute myocardial infarction (AMI) is a multifaceted syndrome influenced by the functions of various extrinsic and intrinsic pathways and pathological processes, which can be detected in circulation using biomarkers. In this study, we investigated the secretome protein profile of induced-hypertrophy cardiomyocytes to identify next-generation biomarkers for AMI diagnosis and management. Hypertrophy was successfully induced in immortalized human cardiomyocytes (T0445) by 200 nM ET-1 and 1 μM Ang II. The protein profiles of hypertrophied cardiomyocyte secretomes were analyzed by nano-liquid chromatography with tandem mass spectrometry and differentially expressed proteins that have been identified by Ingenuity Pathway Analysis. The levels of 32 proteins increased significantly (>1.4 fold), whereas 17 proteins (<0.5 fold) showed a rapid decrease in expression. Proteomic analysis showed significant upregulation of six 14-3-3 protein isoforms in hypertrophied cardiomyocytes compared to those in control cells. Multi-reaction monitoring results of human plasma samples showed that 14-3-3 protein-zeta levels were significantly elevated in patients with AMI compared to those of healthy controls. These findings elucidated the role of 14-3-3 protein-zeta in cardiac hypertrophy and cardiovascular disorders and demonstrated its potential as a novel biomarker and therapeutic strategy.

• 전자공학회논문지CI
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• 제42권1호
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• pp.1-7
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• 2005

마이크로어레이 데이터의 클러스터 분석은 생물학적으로 연관성 있는 유전자 그룹을 찾기 위해 종종 사용되는 방법이다. 기능적으로 연관된 유전자들이 대개 유사한 발현 패턴을 나타내는 특징을 이용하여 유사한 발현 프로파일을 가진 유전자 그룹을 찾아냄으로써 알려지지 않은 유전자들의 기능을 같은 그룹에 속한 다른 유전자로부터 유추할 수 있기 때문이다. 본 논문에서는 클러스터 분석을 위해 시드 클러스터링 알고리즘을 새로이 제안하고, 이 방법을 마이크로어레이 데이터 분석에 적용해본다. 시드 클러스터링 방법은 주어진 데이터를 계산적으로 분석하여 시드 패턴을 자동 추출하고, 이러한 시드 패턴을 목적 클러스터의 프로토타입 벡터로서 간주하여 클러스터를 생성하는 방법이다. 이러한 시드 클러스터링 방법은 수학적 원리에 기초하고 있기 때문에, 매우 체계적인 방법으로 안정적이며 일관성 있는 클러스터링 결과를 생성할 수 있다. 또한, 실제 마이크로어레이 데이터 분석에 적용해본 결과 데이터에 내재된 각 클러스터를 대표하는 시드 패턴을 매우 효과적으로 자동 추출할 수 있었으며, 클러스터링 결과 또한 타 방법에 비해 다소 우월한 경향을 나타내었다.

• The Plant Pathology Journal
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• 제40권1호
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• pp.83-97
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• 2024

Fusarium graminearum, the causal agent of Fusarium head blight (FHB) in cereal crops, employs the production of sexual fruiting bodies (perithecia) on plant debris as a strategy for overwintering and dissemination. In an artificial condition (e.g., carrot agar medium), the F. graminearum Z3643 strain was capable of producing perithecia predominantly in the central region of the fungal culture where aerial hyphae naturally collapsed. To unravel the intricate relationship between natural aerial hyphae collapse and sexual development in this fungus, we focused on 699 genes differentially expressed during aerial hyphae collapse, with 26 selected for further analysis. Targeted gene deletion and quantitative real-time PCR analyses elucidated the functions of specific genes during natural aerial hyphae collapse and perithecium formation. Furthermore, comparative gene expression analyses between natural collapse and artificial removal conditions reveal distinct temporal profiles, with the latter inducing a more rapid and pronounced response, particularly in MAT gene expression. Notably, FGSG_09210 and FGSG_09896 play crucial roles in sexual development and aerial hyphae growth, respectively. Taken together, it is plausible that if aerial hyphae collapse occurs on plant debris, it may serve as a physical cue for inducing perithecium formation in crop fields, representing a survival strategy for F. graminearum during winter. Insights into the molecular mechanisms underlying aerial hyphae collapse provides offer potential strategies for disease control against FHB caused by F. graminearum.

• Molecular & Cellular Toxicology
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• 제1권1호
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• pp.52-61
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• 2005

Transcript profiling is a particularly valuable tool in the field of steroid receptor biology, as these receptors are ligand-activated transcription factors and therefore exert their initial effects through altering gene expression in responsive cells. Also, an awareness of endocrine disrupting chemicals (EDCs) and their potential screening methods to identify endocrine activity have been increased. Here we developed an in-house cDNA microarray, named KISTCHIP-400 ver. 1.0, with 416 clones, based on public database and research papers. These clones contained estrogen, androgen, thyroid hormone & receptors, sex hormone signal transduction & regulation, c-fos, c-myc, ps2 gene, metabolism related genes etc. Also, to validate the KISTCHIP-400 ver. 1.0, we investigated gene expression profiles with reference hormones, $10^{8}\;M\;17{\beta}-estradiol,\;10^{-7}\;M\;testosterone\;and\;10^{-7}\;M$ progesterone in MCF-7 cell line. As the results, gene expression profiles of three reference hormones were distinguished from each other with significant and identified 33 $17{\beta}-estradiol$ responsive genes. This study is in first step of validation for KISTCHIP-400 ver. 1.0, as following step transcriptional profile analysis on not only low concentrations of EDCs but suspected EDCs using KISTCHIP-400 ver. 1.0 is processing. Our results indicate that the developed microarray may be a useful laboratory tool for screening EDCs and elucidating endocrine disrupting mechanism.

• Nutrition Research and Practice
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• 제10권1호
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• pp.67-73
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• 2016

BACKGROUND/OBJECTIVES: This study was aimed at examining the association between dietary flavanones intake and lipid profiles according to the presence of metabolic syndrome (MetS) in Korean women with type 2 diabetes mellitus (T2DM). SUBJECTS/METHODS: A cross-sectional analysis was performed among 502 female T2DM patients (non-MetS group; n = 129, MetS group; n = 373) who were recruited from the Huh's Diabetes Clinic in Seoul, Korea between 2005 and 2011. The dietary intake was assessed by a validated semi-quantitative food frequency questionnaire (FFQ) and the data was analyzed using the Computer Aided Nutritional Analysis program (CAN-Pro) version 4.0 software. The intake of flavanones was estimated on the basis of the flavonoid database. RESULTS: In the multiple linear regression analysis after adjustment for confounding factors, daily flavanones intake was negatively associated with CVD risk factors such as total cholesterol, LDL-cholesterol, and apoB and apoB/apoA1 ratio only in the MetS group but not in the non-MetS group. Multiple logistic regression analysis revealed that the odds ratio for a higher apoB/apoA1 ratio above the median (${\geq}0.74$) was significantly low in the $4^{th}$ quartile compared to that in the $1^{st}$ quartile of dietary flavanones intake [OR: 0.477, 95% CI: 0.255-0.894, P for trend = 0.0377] in the MetS group. CONCLUSIONS: Dietary flavanones intake was inversely associated with the apoB/apoA1 ratio, suggesting a potential protective effect of flavanones against CVD in T2DM women with MetS.