• Title/Summary/Keyword: Alignment Pattern

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Evaluation of Alignment Methods for Genomic Analysis in HPC Environment (HPC 환경의 대용량 유전체 분석을 위한 염기서열정렬 성능평가)

  • Lim, Myungeun;Jung, Ho-Youl;Kim, Minho;Choi, Jae-Hun;Park, Soojun;Choi, Wan;Lee, Kyu-Chul
    • KIPS Transactions on Software and Data Engineering
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    • v.2 no.2
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    • pp.107-112
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    • 2013
  • With the progress of NGS technologies, large genome data have been exploded recently. To analyze such data effectively, the assistance of HPC technique is necessary. In this paper, we organized a genome analysis pipeline to call SNP from NGS data. To organize the pipeline efficiently under HPC environment, we analyzed the CPU utilization pattern of each pipeline steps. We found that sequence alignment is computing centric and suitable for parallelization. We also analyzed the performance of parallel open source alignment tools and found that alignment method utilizing many-core processor can improve the performance of genome analysis pipeline.

Electro-optical characteristics of New Pixel structure in PVA mode. (PVA 모드에서의 새로운 화소구조의 전기광학 특성)

  • Jeon, Yeon-Mun;Kim, Youn-Sik;Kim, Sang-Gyun;Lyu, Jae-Jin;Lee, Seung-Hee
    • Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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    • 2006.04a
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    • pp.43-44
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    • 2006
  • We have studied effect of Patterned Vertical Alignment (PVA) mode on electro-optical characteristics and stability of liquid crystal director upon electrode pattering. In the present studies, LC director field and stability of conventional PVA mode electrode patterns were analyzed and new type of electrode patterns were suggested. At last, comparison between this new type of electrode patterns to conventional electrode pattern types were followed.

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miRNA Pattern Discovery from Sequence Alignment

  • Sun, Xiaohan;Zhang, Junying
    • Journal of Information Processing Systems
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    • v.13 no.6
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    • pp.1527-1543
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    • 2017
  • MiRNA is a biological short sequence, which plays a crucial role in almost all important biological process. MiRNA patterns are common sequence segments of multiple mature miRNA sequences, and they are of significance in identifying miRNAs due to the functional implication in miRNA patterns. In the proposed approach, the primary miRNA patterns are produced from sequence alignment, and they are then cut into short segment miRNA patterns. From the segment miRNA patterns, the candidate miRNA patterns are selected based on estimated probability, and from which, the potential miRNA patterns are further selected according to the classification performance between authentic and artificial miRNA sequences. Three parameters are suggested that bi-nucleotides are employed to compute the estimated probability of segment miRNA patterns, and top 1% segment miRNA patterns of length four in the order of estimated probabilities are selected as potential miRNA patterns.

Capillary Force Lithographic Patterning of a Thermoplastic Polymer Layer for Control of Azimuthal Anchoring in Liquid Crystal Alignment

  • Kim, Hak-Rin;Shin, Min-Soo;Bae, Kwang-Soo;Kim, Jae-Hoon
    • Journal of Information Display
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    • v.9 no.1
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    • pp.14-19
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    • 2008
  • We demonstrated the capillary force lithography (CFL) method for controlling the azimuthal anchoring energy of a liquid crystal (LC) alignment layer. When a thermoplastic polymer film is heated to over the glass transition temperature, the melted polymer is filled into the mold structure by the capillary action and the aspect ratio of the pattern is determined by the dewetting time of the CFL process. Here, the proposed method showed that the azimuthal anchoring energy of the LC alignment layer could be simply controlled by the surface relief patterns which were determined by the dewetting times during the CFL patterning.

Femtosecond Laser Application to PLC Optical Devices and Packaging

  • Sohn, Ik-Bu;Lee, Man-Seop;Lee, Sang-Man
    • ETRI Journal
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    • v.27 no.4
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    • pp.446-448
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    • 2005
  • Using tightly focused femtosecond laser pulses, we produce an optical waveguide and devices in transparent materials. This technique has the potential to generate not only channel waveguides, but also three-dimensional optical devices. In this paper, an optical splitter and U-grooves, which are used for fiber alignment, are simultaneously fabricated in a fused silica glass using near-IR femtosecond laser pulses. The fiber- aligned optical splitter has a low insertion loss, less than 4 dB, including an intrinsic splitting loss of 3 dB and excess loss due to the passive alignment of a single-mode fiber. Finally, we present an output field pattern, demonstrating that the splitting ratio of the optical splitter becomes approximately 1:1.

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The Experimental Study on GCM(General Coordinative Manipulation) which has been studied on the basis of Spine & Limb Extremity (인체 사지 및 척추관절의 운동증감패턴에 따른 전신교정치료에 관한 실증적 연구)

  • Moon, Sang-Eun
    • Journal of Korean Physical Therapy Science
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    • v.6 no.2
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    • pp.1041-1062
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    • 1999
  • This study is to stimulate the model of which top notch muscle stimuli physical therapy has been made on the basis of GCM. GCM has been studied on the hypermobility & hypomobility pattern on the part of spine & extremity, and the body characteristics of four body types, which is the tilting of seal scapular & ilium. The purpose of this study is to analysize the type of GCM which has been focused on the spine & extremity for the patients having dysfunctions of neuromuscular system, being analysized the movement. The result of this study is as following; 1) The First hypothesis: The hypermobility & hypomobility pattern assorted by the tilting of scapular & ilium, as does the former study analysize was claimed that it would be in line with the pattern for hypermobility hypomobility and physical characteristics according to each body type at the percentage of at least 60(p<.001). 2) The 2nd hypothesis : Stimuli therapy of muscle dealing with physical characteristics and joint hypermobility hypomobility has the important role in restoring the deformity and keeping anatomical postural plumb alignment also it would a highly effects on correcting the body even though the stimuli area was limited to four areas and it was lack of time compared with those applied by general physical therapy(p<.001). As above the result, the top-notch type for physical therapy based on hypermobility hypomobility pattern by 4 body types which has been studied on tilting of scapular & ilium is more specificed and specialized than those of general physical therapy technologies. So this study will be believed to dedicate to restoration ideal anatomical postural plumb alignment based on spinal Manipulation and the concept of whole person as well as to being simple and effective to apply.

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Conductivity Pattern Manufacture Technology of Solid Surface Compound Polymer Material (입체면 복합 폴리머 소재의 전도성 패턴 제작 기술)

  • Youn, Shin-Yong
    • The Transactions of the Korean Institute of Electrical Engineers P
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    • v.65 no.3
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    • pp.224-234
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    • 2016
  • This study developed the conductivity pattern of solid surface using laser direct pattern and compound polymer material technology. For development direct patterning system of solid surface, we used the laser power stabilizer, the dynamic focusing, 3D scanner S/W and the auto aligning techniques. Also For conductivity pattern, we are developed compound polymer material with additive by electro-less plating. These technologies are already used commercially. However operation and control integrated system for direct patterning of solid surface are not yet developed. The objective of this paper is to introduce the laser direct structuring for simple process improvement instead complex PCB process, and develop the operating stability and integration system. Also we implemented new application of laser direct structuring through sample manufacture.

Pattern Characteristic by Electrostatic Field Induced Drop-On-Demand Ink-jet Printing

  • Choi, J.Y.;Kim, Y.J.;Son, S.U.;Kim, Y.M.;Lee, S.H.;Byun, D.Y.;Ko, H.S.
    • Proceedings of the KSME Conference
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    • 2007.05a
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    • pp.451-454
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    • 2007
  • This paper presents the pattern characteristic using the electrostatic drop-on-demand ink-jet printing system. In order to achieve the pattern characteristic of electrostatic inkjet printing, the capillary inkjet head system is fabricated using capillary tube, Pt wire and electrode, and is packaged by acrylic board for the accurate alignment between wire and electrode-hole. The applied DC voltage of 1.4 $\sim$ 2.0 kV used for the observation of electrostatic droplet ejection. Electrostatic droplet ejection is directly observed using a high-speed camera. For investigated pattern characteristic, conductive inkjet silver ink used. The higher voltage has a good condition which has micro dripping mode. Also, the droplet size decreases with increasing the supplied DC voltage. This paper shows the pattern which is formed by about 300um. Also, capillary inkjet head system will be applied industrial area comparing conventional electrostatic inkjet head system.

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The Alignment of Measuring Data using the Pattern Matching Method (패턴매칭을 이용한 형상측정 데이터의 결합)

  • 조택동;이호영
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 2000.11a
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    • pp.307-310
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    • 2000
  • The measuring method of large object using the pattern matching is discussed in the paper. It is hard and expensive to get the complete 3D data when the object is large or exceeds the limit of measuring devices. The large object is divided into several smaller areas and is scanned several times to get the data of all the pieces. These data are aligned to get the complete 3D data using the pattern matching method. The point pattern matching method and transform matrix algorithm are used for aligning. The laser slit beam and CCD camera is applied for experimental measurement. Visual C++ on Window98 is implemented in processing the algorithm.

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A Study on the One-leg Drop landing Pattern and Muscular Activity depending on Chronic Ankle instability among Basketball Club members (농구동호인의 만성발목관절불안정성에 따른 한발착지패턴과 근활성도에 관한 연구)

  • Jeong, Kyoung-Yeol;Kim, Tae-Gyu
    • Journal of Digital Convergence
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    • v.19 no.2
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    • pp.481-488
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    • 2021
  • This study aimed to identify and to compare the difference the changes of one-leg drop landing pattern depending on chronic ankle instability (CAI) among basketball club members. For 30 basketball club members who are currently participating in recreational basketball games in Busan Metropolitan City, 21 CAI groups and 9 CON groups were classified according to the CAI standards provided by the International Ankle Consortium. The one-leg drop landing pattern was measured with the alignment of the lower extremity and joint movement at the initial contact (IC), and the point of peak knee flexion. In addition, the one-leg drop landing pattern was tested with the muscular activity of tibialis anterior, peroneus longus, medial gastrocnemius and gluteus medius at the initial contact (IC), heel contact (HC), and the point of peak knee flexion. The results of this study showed that there was no significant difference in lower limb alignment and lower limb muscular activity among single leg drop landing. These results showed no significant differences in the one leg drop landing pattern and muscular activity depending on CAI. The further studies should classify the types of chronic ankle instability and consider the physical demands and movement characteristics depending on their playing position for providing useful information on prevention of CAI in basketball club members.