• Journal of Microbiology and Biotechnology
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• v.30 no.9
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• pp.1335-1342
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• 2020

The identification of bacterial pathogens to humans is critical for environmental microbial risk assessment. However, current methods for identifying pathogens in environmental samples are limited in their ability to detect highly diverse bacterial communities and accurately differentiate pathogens from commensal bacteria. In the present study, we suggest an improved approach using a combination of identification results obtained from multiple databases, including the multilocus sequence typing (MLST) database, virulence factor database (VFDB), and pathosystems resource integration center (PATRIC) databases to resolve current challenges. By integrating the identification results from multiple databases, potential bacterial pathogens in metagenomes were identified and classified into eight different groups. Based on the distribution of genes in each group, we proposed an equation to calculate the metagenomic pathogen identification index (MPII) of each metagenome based on the weighted abundance of identified sequences in each database. We found that the accuracy of pathogen identification was improved by using combinations of multiple databases compared to that of individual databases. When the approach was applied to environmental metagenomes, metagenomes associated with activated sludge were estimated with higher MPII than other environments (i.e., drinking water, ocean water, ocean sediment, and freshwater sediment). The calculated MPII values were statistically distinguishable among different environments (p < 0.05). These results demonstrate that the suggested approach allows more for more accurate identification of the pathogens associated with metagenomes.

• Mycobiology
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• v.45 no.4
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• pp.392-400
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• 2017

Peanut yield and quality are seriously affected by pod rot pathogens worldwide, especially in China in recent years. The goals of this study are to analyze the structure of fungal communities of peanut pod rot in soil in three peanut cultivars and the correlation of pod rot with environmental variables using 454 pyrosequencing. A total of 46,723 internal transcribed spacer high-quality sequences were obtained and grouped into 1,706 operational taxonomic units at the 97% similarity cut-off level. The coverage, rank abundance, and the Chao 1 and Shannon diversity indices of the operational taxonomic units were analyzed. Members of the phylum Ascomycota were dominant, such as Fusarium, Chaetomium, Alternaria, and Sordariomycetes, followed by Basidiomycota. The results of the heatmap and redundancy analysis revealed significant variation in the composition of the fungal community among the three cultivar samples. The environmental conditions in different peanut cultivars may also influence on the structure of the fungal community. The results of this study suggest that the causal agent of peanut pod rot may be more complex, and cultivars and environmental conditions are both important contributors to the community structure of peanut pod rot fungi.

• Journal of The Korean Society of Agricultural Engineers
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• v.61 no.6
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• pp.21-30
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• 2019

Livestock odor is comprised of mixed type of odorous compounds. Among these, ammonia ($NH_3$) and hydrogen sulfide ($H_2S$) are the two known major odor causing substances. Because high odor concentration reduces productivity of livestock and causes damage to the surrounding communities, quantitative analysis is needed to manage the odor inside and outside the livestock facilities. It is also necessary to evaluate odor dispersion according to the distance between the receptors taking into account the influence of odor source and weather condition. Therefore, in this study, we tried to evaluate the internal environment and odor dispersion from experimental pig house considering weather conditions. An experimental farm was specifically selected to eliminate the interference of odors generated by adjacent farms. $NH_3$ and complex odor were quantitatively analyzed using a gas detector and air dilution sensory method. The concentration of $NH_3$ and complex odor in pig house showed a distinct concentration difference according to the cleaning and ventilation conditions. $NH_3$ concentration and complex odor was lower than emission standard in the pig house and at the site boundary. The average $NH_3$ concentration (P1~P3) and the $NH_3$ concentration at the site boundary (S1) were strongly correlated with R=0.77. While the correlation for complex odor inside and at the site boundary had R=0.52. The correlation coefficient between $NH_3$ and the complex odor was 0.80.

• Journal of The Korean Society of Agricultural Engineers
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• v.64 no.6
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• pp.55-63
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• 2022

Odors emitted from pig houses have been a constant root of legal issues in pig farming. These gases are among the main causes of health and mental stresses to nearby communities, so policymakers and researchers continuously study to reduce the concentration of odorous gases from pig facilities. A continuous field experiment proved that the concentration of odor emissions inside the pig houses is highly dependent on ventilation rate, breeding details, and animal activities. However, the standard odor emission rate worldwide widely varies due to differences in pig house designs and ventilation requirements. Thus, this study aimed to measure the odor emission rates, considering the actual condition of selected Korean pig houses, through field measurement. The odor measurements were performed at three different pig production facilities without odor abatement technologies. The target experimental pig houses were buildings for weaning, growing, and fattening pigs. Results showed that the actual ventilation rate in target pig houses falls below the standard ventilation requirement of pigs, resulting in high odor concentrations inside the pig houses.

• Journal of Microbiology and Biotechnology
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• v.34 no.3
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• pp.516-524
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• 2024

This study aimed to investigate the effects of dietary spray-dried plasma (SDP) on the gut microbiota of lactating sows and their piglets. A total of 12 sows were randomly assigned to one of two dietary treatment groups in a completely randomized design. The treatments were a sow diet based on corn and soybean meal (CON), and a CON diet with an added 1% SDP. The sows were fed the dietary treatments from d 30 before farrowing to weaning (d 28). The fecal samples of three sows from each treatment and two of their randomly selected piglets were collected to verify their fecal microbiota. There were no differences in the alpha diversity and distinct clustering of the microbial communities in the sows and their piglets when SDP was added to the sow diets from late gestation to weaning. The fecal microbiota of the lactating sows and their piglets showed a higher relative abundance of the phylum Bacteroidota and genus Lactobacillus and Ruminococcus and showed a lower relative abundance of the phylum Bacillota and genus Bacteroides, Escherichia/Shigella, and Clostridium in the sows fed the SDP diet than those fed the CON diet. Overall, these results show that the addition of SDP to the sow diet during lactation altered the gut environment with positive microbial composition changes. These results were similar in the nursing piglets, suggesting that the control of the sow diets during lactation may contribute to the intestinal health and growth in piglets after weaning.

• Korean Journal of Environmental Biology
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• v.35 no.3
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• pp.398-412
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• 2017

The aim of this study was to collect the basic data for effective creation and management of hilly pasture. The investigation of flora and vegetation was conducted at 59 $relev\acute{e}s$ in hilly pasture of Daegwallyeong from 2014 to 2016. The vascular plants of the hilly pasture were 121 listed taxa which contain 38 families, 90 genera, 104 species, 13 varieties, and 12 subspecies. The biological type of the hilly pasture was determined as the $Th-D_4-R_5-e$ type. Twelve taxa were of naturalized plants composed of 5 families, 9 genera, 12 species. The urbanization index and the naturalized index were 3.7% and 9.9%, respectively. The vegetation types in the hilly pasture were classified into the following 3 communities: the Spiraea miyabei-Spiraea salicifolia community, the Persicaria thunbergii community, and the Agrostis alba-Phleum pratense community. The Agrostis alba-Phleum pratense community was classified into the following 5 subcommunities: the Poa pratensis subcommunity, the Artemisia princeps subcommunity, the Festuca ovina subcommunity, the Rumex acetosella subcommunity, and the typical subcommunity. Two factors (slope and EC) had the strongest impact on plant community distribution. Especially, the steep sloping sites (over $40^{\circ}$) did not play a crucial role in maintaining adequate pasture because of the invasion and establishment of shrubs.

• Korean journal of applied entomology
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• v.56 no.1
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• pp.29-39
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• 2017

To compare the features of ground-dwelling invertebrates according agroecosystems, we selected paddy fields, dry fields, orchards in the Eastern region of Korea. The surveys were performed by using pit-fall traps twice per year from 2013 to 2015. Total 6,420 individuals of 172 species belonging to 13 orders, 58 families were investigated in the Eastern region, the species of Hymenoptera (38.26%), Orthoptera (16.28%) accounted large portion of the communities. In the geographical observation, invertebrates were caught was 2,983 individuals in Gyeongsangnam-do, the diversity index of Gyeongsangbuk-do community was higher than of the others and abundance and species richness of paddy field were higher than from dry field or orchard. To understand the relation between taxonomic groups and environmental factors, we carried out the canonical correspondence analysis and hierarchical clustering. As a result, Homoptera, Blattaria, Isoptera, and Coleoptera were positively related to soil pH, soil temperature, and moisture contents, and negatively related to the others. Invertebrate community also were patterned dependently by type of ecosystems. This results were shown that distribution of invertebrates is a few influenced the relationship of the space habituated invertebrates and environmental factors.

• Journal of Korean Society of Environmental Engineers
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• v.35 no.12
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• pp.973-977
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• 2013

These studies were attempted to investigate the change of microbial community of anode of microbial fuel cell using swine wastewater in the enrichment step with the lapse of time. Microbial fuel cells enriched by a 1 : 1 mixture of anaerobic digestive juices of the sewage treatment plant and livestock wastewater. Enrichment culture step was divided into three stages to indentify the microorganisms. It was separated by each lag phase, exponential phase, and stationary phase. These steps were determined by the change of the current value. The current after enrichment was generated about $0.84{\pm}0.06mA$. We were cut out the different 17 bands in the DGGE fingerprint gel to do sequencing. The bands which the concentration was increasing or newly appearing with the lapse of time were included for this study. In the lag and exponential phase, Clostridium, Rhodocyclaceae, Bacteriodetes, and Uncultured bacterium etc. were detected. There were in the stationary phase Geobacter sp., Rhodocyclaceae, Candidatus, Nitrospira, Flavobactriaceae and uncultured bacterium etc. Geobactor among microorganisms detected in this study is known as the Electrochemically active microorganisms. It may include electrochemically active microorganisms to be considered as electrical activity microorganisms.

• Asian-Australasian Journal of Animal Sciences
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• v.18 no.11
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• pp.1662-1668
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• 2005

This review has been done to examine sex-linked dwarf gene in broiler production in hot-humid climates. Introduction of sex-linked dwarf gene especially in hot harsh tropical environments brings a great advantage for broiler production. The heavy broiler parent suffers due to the stress of these adverse climates. Sex-linked dwarf genes reduce body weight, egg weight, but are superior for adaptability under harsh tropical environments, with a lower requirement for housing and feed, better survivability and reproductive fitness giving fewer defective eggs, more hatching eggs, better fertility, hatchability, feed conversion efficiency and resistance to disease. Overall the cost of chick production from dwarf hens is lower than from their normal siblings. Market weights of broilers from sexlinked dwarf dams is almost similar to those of broilers from normal dams with normal sires. But the net benefit of broiler production from sex-linked dwarf dams is found to be greater than that of broilers from normal dams. This will be the most important to the rural communities in Bangladesh and in other countries where the similar environment and socio-economic conditions exist. Therefore, sexlinked dwarf hens might be used in broiler breeding plan as well as broiler production in the tropics.

• Journal of Forest and Environmental Science
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• v.33 no.1
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• pp.1-7
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• 2017

In the present exploration we identified perception of forest dependent communities in relation to impact of climate change on forest ecosystem in and around Chilapatta reserve forest in northern part of West Bengal, India. Purposive sampling method was used for selection of area and random sampling method was used for selection of respondent. The data collection in this study was through questionnaire based personal in-depth interviews. Almost all the respondents (94%) were farmers and rest had occupation other than farming. Almost all the respondents perceived negative impact of climate change on forest though the level of perception varies from very low to medium (0.23-0.52) based on average perception score after assigning score to individual statements. The level of perception on impact of climate change on forest ecology and forest flora of the community is low and very low as the average perception score is 0.39 and 0.23, respectively while, it is medium (0.52) for forest fauna. Alternately their perception on decreased stream/river flow and quick drying of seasonal streams or water bodies is based on their livelihood experience as they depend on these for their domestic and irrigation water use and fish catch for family diet.