• Title/Summary/Keyword: Additive Variance

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A Whole Genome Association Study on Meat Palatability in Hanwoo

  • Hyeong, K.E.;Lee, Y.M.;Kim, Y.S.;Nam, K.C.;Jo, C.;Lee, K.H.;Lee, J.E.;Kim, J.J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.27 no.9
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    • pp.1219-1227
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    • 2014
  • A whole genome association (WGA) study was carried out to find quantitative trait loci (QTL) for sensory evaluation traits in Hanwoo. Carcass samples of 250 Hanwoo steers were collected from National Agricultural Cooperative Livestock Research Institute, Ansung, Gyeonggi province, Korea, between 2011 and 2012 and genotyped with the Affymetrix Bovine Axiom Array 640K single nucleotide polymorphism (SNP) chip. Among the SNPs in the chip, a total of 322,160 SNPs were chosen after quality control tests. After adjusting for the effects of age, slaughter-year-season, and polygenic effects using genome relationship matrix, the corrected phenotypes for the sensory evaluation measurements were regressed on each SNP using a simple linear regression additive based model. A total of 1,631 SNPs were detected for color, aroma, tenderness, juiciness and palatability at 0.1% comparison-wise level. Among the significant SNPs, the best set of 52 SNP markers were chosen using a forward regression procedure at 0.05 level, among which the sets of 8, 14, 11, 10, and 9 SNPs were determined for the respectively sensory evaluation traits. The sets of significant SNPs explained 18% to 31% of phenotypic variance. Three SNPs were pleiotropic, i.e. AX-26703353 and AX-26742891 that were located at 101 and 110 Mb of BTA6, respectively, influencing tenderness, juiciness and palatability, while AX-18624743 at 3 Mb of BTA10 affected tenderness and palatability. Our results suggest that some QTL for sensory measures are segregating in a Hanwoo steer population. Additional WGA studies on fatty acid and nutritional components as well as the sensory panels are in process to characterize genetic architecture of meat quality and palatability in Hanwoo.

Land-Cover Vegetation Change Detection based on Harmonic Analysis of MODIS NDVI Time Series Data (MODIS NDVI 시계열 자료의 하모닉 분석을 통한 지표 식생 변화 탐지)

  • Jung, Myunghee;Chang, Eunmi
    • Korean Journal of Remote Sensing
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    • v.29 no.4
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    • pp.351-360
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    • 2013
  • Harmonic analysis enables to characterize patterns of variation in MODIS NDVI time series data and track changes in ground vegetation cover. In harmonic analysis, a periodic phenomenon of time series data is decomposed into the sum of a series of sinusoidal waves and an additive term. Each wave is defined by an amplitude and a phase angle and accounts for the portion of variance of complex curve. In this study, harmonic analysis was explored to tract ground vegetation variation through time for land-cover vegetation change detection. The process also enables to reconstruct observed time series data including various noise components. Harmonic model was tested with simulation data to validate its performance. Then, the suggested change detection method was applied to MODIS NDVI time series data over the study period (2006-2012) for a selected test area located in the northern plateau of Korean peninsula. The results show that the proposed approach is potentially an effective way to understand the pattern of NDVI variation and detect the change for long-term monitoring of land cover.

THE EFFECT OF PARATHYROID HORMONE ON CYCLIC AMP LEVEL AND DISTRIBUTION IN PERIODONTAL CELLS IN TENS10N SITES DURING ORTHODONTIC TREATMENT (교정적 치아이동시 부갑상선홀몬이 긴장측 치주세포의 cAMP농도에 미치는 영향)

  • Davidovitch, Zeev;Lee, Ki-Soo;Zwilling, Bruce S.;Lanese, Richard R.;Schanfeld, Joseph L.
    • The korean journal of orthodontics
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    • v.16 no.1
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    • pp.51-70
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    • 1986
  • Parathyroid hormone (PTH) is known to exert its effects on bone cells through the mediation of adenosine 3', 5'-monophosphate (cAMP). Orthodontic forces have also been shown to alter the cAMP content of paradental cells, particularly the alveolar bone osteoblasts. The objective of this experiment was to determine whether a combined orthodontic treatment-PTH administration regimen would have an additive effect on cAMP content in paradental cells in sites of periodontal ligament (PDL) tension. Seven groups of 4 one year old female cats each were treated for 1,3,6,12,24 h, 7 and 14 d by tipping one maxillary canine. PTH was administered twice daily, 30u/kg. Maxillary horizontal sections were stained immunohistochemically for cAMP and the degree of cellular staining intensity was determined microphotometrically as per cent light transmittance at 600nm. Alveolar bone osteoblasts, progenitor cells, PDL fibroblasts and cementoblasts in tenion sites were measured and the data were analyzed statistically by a mixed model analysis of variance. PTH administration increased the cAMP staining of nonorthodontically treated paradental cells in comparison to cells untreated by force or hormone. Cells in PDL tension sites of PTH-treated cats demonstrated significantly darker cAMP staining than cells in non-orthodontically-treated sites. Osteoblasts demonstrated the greatest response in terms of cAMP elevation, while in PDL fibroblasts orthodontic force did not increase cAMP levels above those measured in non-stretched hormonally-treated cells. These results demonstrate that PTH increases cAMP levels in paradental cells, particullarly in osteoblasts, and that the effects of PTH and orthodontic forces on paradental target cells may approach additivity.

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A Motion Detection Approach based on UAV Image Sequence

  • Cui, Hong-Xia;Wang, Ya-Qi;Zhang, FangFei;Li, TingTing
    • KSII Transactions on Internet and Information Systems (TIIS)
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    • v.12 no.3
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    • pp.1224-1242
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    • 2018
  • Aiming at motion analysis and compensation, it is essential to conduct motion detection with images. However, motion detection and tracking from low-altitude images obtained from an unmanned aerial system may pose many challenges due to degraded image quality caused by platform motion, image instability and illumination fluctuation. This research tackles these challenges by proposing a modified joint transform correlation algorithm which includes two preprocessing strategies. In spatial domain, a modified fuzzy edge detection method is proposed for preprocessing the input images. In frequency domain, to eliminate the disturbance of self-correlation items, the cross-correlation items are extracted from joint power spectrum output plane. The effectiveness and accuracy of the algorithm has been tested and evaluated by both simulation and real datasets in this research. The simulation experiments show that the proposed approach can derive satisfactory peaks of cross-correlation and achieve detection accuracy of displacement vectors with no more than 0.03pixel for image pairs with displacement smaller than 20pixels, when addition of image motion blurring in the range of 0~10pixel and 0.002variance of additive Gaussian noise. Moreover,this paper proposes quantitative analysis approach using tri-image pairs from real datasets and the experimental results show that detection accuracy can be achieved with sub-pixel level even if the sampling frequency can only attain 50 frames per second.

Genetic and Phenotypic Evaluation of Milk and Fat Production Traits and Their Interrelationship in (Zebu×European) Crossbred Cattle Using Parent Group Mixed Model

  • Singh, D.;Yadav, A.S.;Dhaka, S.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.16 no.9
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    • pp.1242-1246
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    • 2003
  • Data pertained to 335 crossbred cows comprising of 1/2 Friesian (F) + 1/2 Hariana (H), 1/2 F + 1/4 Jersey (J) + 1/4 H, 1/2 F + 1/4 Brown Swiss (BS) + 1/4 H, 1/2 F + 1/4 Red Dane (R) + 1/4 H, FR (I) and FRH (I) genetic groups extending over a period of 21 years (1970-1990) maintained at Animal Farm of CCS HAU, Hisar. The averages for first lactation milk yield was $2,486.24{\pm}80.26kg$ and peak yield of first three lactation were $11.35{\pm}0.72kg$, $13.97{\pm}0.60kg$ and $16.02{\pm}0.42kg$, respectively. The lifetime milk production was observed as $11,305.16{\pm}1,004.52kg$ in crossbred cattle. The average first lactation fat yield was observed as $102.06{\pm}0.01kg$ and peak fat yield of first three lactation were $0.458{\pm}0.01$, $0.490{\pm}0.01$ and $0.500{\pm}0.02kg$, respectively. The lifetime fat production was estimated as $502.31{\pm}45.90kg$. LTMP and LTFP had reasonably good additive genetic variance which could be exploited either through mass selection/combined with family or pedigree selection. FLMY, peak yields and LTMP had significant positive phenotypic correlation with FLFY and LTFP and the correlation at the genetic level were also higher and positive for these traits. Finally, peak week milk yield of first lactation (PMY1) was the earliest available trait having desirable and significant correlation at phenotypic and positive at genetic level with FLFY, PFY1 and PFY2, PFY3 and LTFP and selection for this trait will help in early evaluation of sires and dams and will increase genetic advancement per unit of time.

Estimation of genetic parameters and trends for production traits of dairy cattle in Thailand using a multiple-trait multiple-lactation test day model

  • Buaban, Sayan;Puangdee, Somsook;Duangjinda, Monchai;Boonkum, Wuttigrai
    • Asian-Australasian Journal of Animal Sciences
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    • v.33 no.9
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    • pp.1387-1399
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    • 2020
  • Objective: The objective of this study was to estimate the genetic parameters and trends for milk, fat, and protein yields in the first three lactations of Thai dairy cattle using a 3-trait,-3-lactation random regression test-day model. Methods: Data included 168,996, 63,388, and 27,145 test-day records from the first, second, and third lactations, respectively. Records were from 19,068 cows calving from 1993 to 2013 in 124 herds. (Co) variance components were estimated by Bayesian methods. Gibbs sampling was used to obtain posterior distributions. The model included herd-year-month of testing, breed group-season of calving-month in tested milk group, linear and quadratic age at calving as fixed effects, and random regression coefficients for additive genetic and permanent environmental effects, which were defined as modified constant, linear, quadratic, cubic and quartic Legendre coefficients. Results: Average daily heritabilities ranged from 0.36 to 0.48 for milk, 0.33 to 0.44 for fat and 0.37 to 0.48 for protein yields; they were higher in the third lactation for all traits. Heritabilities of test-day milk and protein yields for selected days in milk were higher in the middle than at the beginning or end of lactation, whereas those for test-day fat yields were high at the beginning and end of lactation. Genetics correlations (305-d yield) among production yields within lactations (0.44 to 0.69) were higher than those across lactations (0.36 to 0.68). The largest genetic correlation was observed between the first and second lactation. The genetic trends of 305-d milk, fat and protein yields were 230 to 250, 25 to 29, and 30 to 35 kg per year, respectively. Conclusion: A random regression model seems to be a flexible and reliable procedure for the genetic evaluation of production yields. It can be used to perform breeding value estimation for national genetic evaluation in the Thai dairy cattle population.

Factors Influencing Genetic Change for Milk Yield within Farms in Central Thailand

  • Sarakul, M.;Koonawootrittriron, S.;Elzo, M.A.;Suwanasopee, T.
    • Asian-Australasian Journal of Animal Sciences
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    • v.24 no.8
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    • pp.1031-1040
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    • 2011
  • The objective of this study was to characterize factors influencing genetic improvement of dairy cattle for milk production at farm level. Data were accumulated from 305-day milk yields and pedigree information from 1,921 first-lactation dairy cows that calved from 1990 to 2007 on 161 farms in Central Thailand. Variance components were estimated using average information restricted maximum likelihood procedures. Animal breeding values were predicted by an animal model that contained herd-year-season, calving age, and regression additive genetic group as fixed effects, and cow and residual as random effects. Estimated breeding values from cows that calved in a particular month were used to estimate genetic trends for each individual farm. Within-farm genetic trends (b, regression coefficient of farm milk production per month) were used to classify farms into 3 groups: i) farms with negative genetic trend (b<-0.5 kg/mo), ii) farms with no genetic trend (-0.5 kg/$mo{\leq}b{\leq}0.5$ kg/mo), and iii) farms with positive genetic trend (b>0.5 kg/mo). Questionnaires were used to gather information from individual farmers on educational background, herd characteristics, farm management, decision making practices, and opinion on dairy farming. Farmer's responses to the questionnaire were used to test the association between these factors and farm groups using Fisher's exact test. Estimated genetic trend for the complete population was $0.29{\pm}1.02$ kg/year for cows. At farm level, most farms (40%) had positive genetic trend ($0.63{\pm}4.67$ to $230.79{\pm}166.63$ kg/mo) followed by farms with negative genetic trend (35%; $-173.68{\pm}39.63$ to $-0.62{\pm}2.57$ kg/mo) and those with no genetic trend (25%; $-0.52{\pm}3.52$ to $0.55{\pm}2.68$ kg/mo). Except for educational background (p<0.05), all other factors were not significantly associated with farm group.

An Adaptive Gradient-Projection Image Restoration using Spatial Local Constraints and Estimated Noise (국부 공간 제약 정보 및 예측 노이즈 특성을 이용한 적응 Gradient-Projection 영상 복원 방식)

  • Hong, Min-Cheol
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.32 no.10C
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    • pp.975-981
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    • 2007
  • In this paper, we propose a spatially adaptive image restoration algorithm using local and statistics and estimated noise. The ratio of local mean, variance, and maximum values with different window size is used to constrain the solution space, and these parameters are computed at each iteration step using partially restored image. In addition, the additive noise estimated from partially restored image and the local constraints are used to determine a parameter for controlling the degree of local smoothness on the solution. The resulting iterative algorithm exhibits increased convergence speed when compared to the non-adaptive algorithm. In addition, a smooth solution with a controlled degree of smoothness is obtained without a prior knowledge about the noise. Experimental results demonstrate that the proposed algorithm requires the similar iteration number to converge, but there is the improvement of SNR more than 0.2 dB comparing to the previous approach.

Optimization of Aqueous Methanol Extraction Condition of Total Polyphenol from Spent $Lycium$ $chinense$ Miller to Develop Feed Additives for Pig (양돈용 사료 첨가제 개발을 위하여 구기자 부산물로부터 메탄올수용액을 이용한 총 폴리페놀 추출조건 최적화)

  • Shim, Kwan-Seob;Na, Chong-Sam;Oh, Sung-Jin;Choi, Nag-Jin
    • Korean Journal of Organic Agriculture
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    • v.20 no.1
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    • pp.91-99
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    • 2012
  • This study was conducted to develop a functional feed additive for pig with spent $Lycium$ $chinense$ Mill fruit. We investigated the optimum conditions for the extraction of polyphenol from spent $Lycium$ $chinense$ Mill using methanol. Methanol concentration as a solvent for extraction, extraction time and the volume of solvent per a gram of solid (ground spent Lyceum chinense Mill) were selected as parameters. Three levels of parameters were configured according to Box Behnken experiment design, a fractional factorial design, and total 15 trials were employed. Total polyphenol concentration from each trial was used as response from experiment system and effects of parameters on total polyphenol extraction efficiency were determined using response surface model. As a result, all terms in analysis of variance, regression ($p$ = 0.001), linear ($p$ = 0.002), square ($p$ = 0.017) and interaction ($p$ = 0.047) was significant and adjusted determination coefficient ($R^2$) was 94.7%. Total polyphenol extraction efficiency was elevated along increased methanol content and decreased solvent to solid ratio. However extraction time did not affect the efficiency. This study provides a primary information for the optimum extraction conditions to maximize total polyphenol recovery from spent Lycium chinens Mill fruit and this result could be applied to re-use of argo-industrial by-products and to develop of functional feed additives in organic farming.

Analysis of nonlinear distortions in OFDM systems (OFDM 시스템의 비선형 왜곡 분석)

  • 전원기;조용수
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.23 no.4
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    • pp.976-987
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    • 1998
  • In this paper, the effect of nonllinear distortion, caused by a high-power amplifier(HPA) in an orthogonal frequency division multiplexing (OFDM) system, on the receiver part is analyzed. Since the HPA, which can be modeled by a memeoryless Volterra system, distorts OFDM signals in a nonlinear fashion, the received signal at each subchannel includes the multiplicative distortion of 1-st order as well as additive nonlinear distortion of high-order. the nonlinear distortion can be viewed as a nonlinear interchannel interference (NICI) since it consists of harmonic distortions and intermodulation distortions, produced by oother subchannels affecting the subchannel of interest. In this paper, we analytically derive the variance of NICI in terms of average input power using the volterra model for HPA, and then calculate the bit-effor rate(BER) performance of an OFDM system. Also, we propose a simple method to compensate for the phase distortion in OFDM system amplified by HPA, OFDM system employing 16-QAM constellation input.

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