• Microbiology and Biotechnology Letters
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• v.46 no.2
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• pp.102-110
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• 2018

A bacterial strain capable of metabolizing myo-inositol (MI) and converting to other substances was isolated from soil of orchard. The isolate, named YB-46, was grown on minimal medium supplemented with MI as the sole carbon source and was presumed to belonging to genus Enterobacter according to the 16S rDNA sequence. Escherichia coli transformant converting MI into unknown metabolites was selected from a metagenomic library prepared with fosmid pCC1FOS vector. Plasmid was isolated from the transformant, and the inserted gene was partially sequenced. From the nucleotide sequence, an iolG gene was identified to encode myo-inositol dehydrogenase (IolG) consisting of 336 amino residues. The IolG showed amino acid sequence similarity of about 50% with IolG of Enterobacter aerogenes and Bacillus subtilis. The His-tagged IolG (HtIolG) fused with hexahistidine at C-terminus was produced and purified from cell extract of recombinant E. coli. The purified HtIolG showed maximal activity at $45^{\circ}C$ and pH 10.5 with the highest activity for MI and D-glucose, and more than 90% of maximal activity for D-chiro-inositol, D-mannitol and D-xylose. $K_m$ and $V_{max}$ values of the HtIolG for MI were 1.83 mM and $0.724{\mu}mol/min/mg$ under the optimal reaction condition, respectively. The activity of HtIolG was increased 1.7 folds by $Zn^{2+}$, but was significantly inhibited by $Co^{2+}$ and SDS.

• Journal of Korean Society of Environmental Engineers
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• v.32 no.3
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• pp.287-295
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• 2010

Dust samples have been collected from streets, schools, subway stations and households in Daegu metropolitan city. Samples were sieved through a 100 ${\mu}m$ mesh and the concentration of 14 elements have been determined using by ICP after acid extraction. Results showed that Ca, Fe, K, Mg, Mn, Na and V were influenced by natural sources while Cd, Cr, Cu, Ni, Pb and Zn were influenced by anthropogenic sources. The measured values were remarkably higher in components from natural sources than in components from anthropogenic sources. In particular, school dust had higher levels of Ca and Pb and subway station dust had higher levels of Cu and Zn. The percentage composition of chemicals from subway stations, households, and schools were remarkably higher in components from anthropogenic sources than that from streets. It is well recognized that anthropogenic sources were affected by indoor dust. Results of pollution index of hazardous heavy metals indicated that schools, households, and subway stations were more contaminated than streets and urban areas typically had higher pollution index than rural areas. The correlation analysis among trace elements seem to suggest that there were correlations between components of soil/road dust resuspension, and components of waste incineration and fuel combustion.

• Journal of Korean Society for Atmospheric Environment
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• v.8 no.4
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• pp.221-228
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• 1992

In order to evaluate the degree of air pollution, soils from 125 and 60points of main streets of Seoul and Daejeon, respectively, were sampled and analyzed for the contents of lead, copper, iron and zinc by nitric acid($HNO_3$) extraction followed by atomic absorption spectrophotometry during June and September, 1990. The Pb contents of Seoul and Daejeon were 350.2$\mu$g/g and 175.9$\mu$g/g, respectively, which were 14.5times and 7.3times respectively higher than the control(24.0). In Seoul, the commercial area gave the highest value followed by resdential and industrial areas in the decreasing order, while the order in Daejeon was Industrial, commercial and residential areas. The Cu contents in Seoul and Daejeon were very similar(236.6 and 234.6, respectively) each other, and about 11times higher than the control(20.9). The concentration was highest in industrial, followed by commercial and the lowest in residential areas in Seoul, while the order in Daejeon was industrial, residential and commercial areas. The Fe contents were 25716.5 in Seoul and 22838.6 in Daejeon, both being similar to the control value(22537.0). The value was highest in industrial and next in commercial areas and the lowest in residential area both in Seoul and Daejeon. The Zn contents in Seoul and Daejeon were 728.2 and 404.0, respectively, wihch were 6.3 and 3.6times higher than the control(113.3). The value was highest in commercial and next in industrial areas and the lowest in residental area in Seoul, while the order was industrial, residential and commercial areas in Daejeon. The heavy metal content was higher in the soil of main streets than that of minor streets in Seoul. The content of lead in Seoul was higher in the streets of Chongro-ku(525.9) and Chung-ku(684.8), the central area of the city which had a heavy traffic, than those in Nowon-ku(320.3) and Kwanak-ku(312.6) which had relatively less traffic crowd. The similar pattern was observed in the content of zinc; it was higher in Chongro-ku(1305.0) and Chung-ku(1335.4) than in Nowon-ku(489.1) and Kwanak-ku(569.8). In Daejeon, the contents of lead and zinc were decreasing as the distance from Daejeon Railroad Station increased : they were respectively 157.8 and 447.7 within 2km from the station, 157.6 and 235.7 with in 2-4km, and 63.5 and 156.2 within 4-6km and 58.7 and 142.2 within 6-8km. In summary, the contents of lead, copper and zinc were generally higher in the central area of the city, areas of heavy traffic and areas of industry and commerce.

• Journal of Microbiology and Biotechnology
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• v.24 no.10
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• pp.1319-1326
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• 2014

Rapamycin, produced by the soil bacterium Streptomyces hygroscopicus, has the ability to suppress the immune system and is used as an antifungal, anti-inflammatory, antitumor, and immunosuppressive agent. In an attempt to increase the productivity of rapamycin, mutagenesis of wild-type Streptomyces hygroscopicus was performed using ultraviolet radiation, and the medium composition was optimized using glycerol (which is one of the cheapest starting substrates) by applying Plackett-Burman design and response surface methodology. Plackett-Burman design was used to analyze 14 medium constituents: M100 (maltodextrin), glycerol, soybean meal, soytone, yeast extract, $(NH_4)_2SO_4$, $\small{L}$-lysine, $KH_2PO_4$, $K_2HPO_4$, NaCl, $FeSO_4{cdot}7H_2O$, $CaCO_3$, 2-(N-morpholino) ethanesulfonic acid, and the initial pH level. Glycerol, soytone, yeast extract, and $CaCO_3$ were analyzed to evaluate their effect on rapamycin production. The individual and interaction effects of the four selected variables were determined by Box-Behnken design, suggesting $CaCO_3$, soytone, and yeast extract have negative effects, but glycerol was a positive factor to determine rapamycin productivity. Medium optimization using statistical design resulted in a 45% ($220.7{\pm}5.7mg/l$) increase in rapamycin production for the Streptomyces hygroscopicus mutant, compared with the unoptimized production medium ($151.9{\pm}22.6mg/l$), and nearly 588% compared with wild-type Streptomyces hygroscopicus ($37.5{\pm}2.8mg/l$). The change in pH showed that $CaCO_3$ is a critical and negative factor for rapamycin production.

• Korean Journal of Plant Resources
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• v.24 no.5
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• pp.483-488
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• 2011

Cacalia firma recently has been used increasingly as leaf vegetables but endangered in natural forest. In this work, we established the plant regeneration via adventitious shoot formation from petiole segments of seedling and in vitro plantlets. Wounding of seed coats and $GA_3$ treatments were effective to induce in vitro germination of seeds, whereas, seed did not germinate at all without these treatment. When cotyledon, leaf, petiole, and root segments of seedling were cultured on medium with 2 $mg{\cdot}L^{-1}$ benzyl adenine (BA) and 0.5 $mg{\cdot}L^{-1}$ naphthaleneacetic acid (NAA), petiole segments showed highest number of shoots per explant among the other segments. Among the various kinds of cytokinins, BA, isopentyl adenine (2-ip), kinetin, zeatin, thidiazuron (TDZ), TDZ and BA treatments were effective to induce high frequency of adventitious shoot formation from petiole segments of in vitro propagated plants. NAA stimulated the frequency of adventitious shoot formation but not for number of adventitious shoots per explants compared to TDZ or BA treatment alone. Most of adventitious shoots were developed directly from surfaces of explants. Adventitious shoots were transferred on medium with IBA for root formation, thereafter the plantlets were successfully transferred to soil.

• Korean Journal of Medicinal Crop Science
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• v.20 no.5
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• pp.359-364
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• 2012

This study were carried out to find bolting response of cultivation in different regions and to isolate FLC (FLOWERING LOCUS C) homologs in Angelica gigas Nakai. The mean temperature of different regions, ordering in altitude, were as follows: 100 m > 350 m > 530 m > 700 m. The largest amount of rainfall was occurred in the region of 350 m while the longest time of sunshine was occurred in the region of 100 m. The content of soil chemical properties in regions showed pH 6.2 ~ 7.4, T-N 0.17 ~ 26, organic mater $1{\sim}32gkg^{-1}$, $P_2O_5$ ${151{\sim}664_{mgkg}}^{-1}$, exchangeable potassium and calcium and magnesium were 0.78 ~ 1.15, 3.9 ~ 10.0, ${0.7{\sim}3.2_{cmol}}^{+kg-1}$. L5 line of A. gigas was occurred in bolting at all regions, but the bolting ratio was 60.0% in 700 m region with non-mulching treatment. Manchu of A. gigas was not occurred in bolting at all regions. The accumulation bolting ratio of L5 line by non-mulching was higher than that of mulching as 90.4% and 72.8% in 100 m region. The MADS-box transcription factor FLC is one of the well-known examples as a strong floral repressor. We decided to isolate FLC homologs from A. gigas as a starting point of flowering mechanism research of this plant. We have isolated two RT-PCR products which showed very high amino acid sequence homology to Arabidopsis FLC.

• Journal of Life Science
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• v.8 no.5
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• pp.614-621
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• 1998

An extracellular inulinase from Penicillium sp. which isolated from soil sample was purified to a single protein th-rough ammonium sulfate fractionation, DEAE-Sephacel ion exchange chromatography and Toyopearl HW 65 F gel filtration. The temperature and pH for the enzyme reaction were around 6$0^{\circ}C$ and 4.0, respectively. The enzyme was stable at 3$0^{\circ}C$-5$0^{\circ}C$ and in the pH range of 4 to 5. $CuCl_2$, $HgCl_2$ and EDTA inhibited the enzyme activity strongly. By contrast, $MnCl_2$ and $CaCl_2$ activated the enzyme activity. The molecular weight of the purified enzyme was esti-mated to be 77,000 dalton by SDS-polyacrylamide gel electrophoresis. The Km values of the enzyme for inulin were calculated to be $2.2\times10^{-3}$M. TLC analysis suggested that purified enzyme is exo-type inulinase. The NH2-terminal amino acid sequences of the purified enzyme was determined to be $NH_2$-X-Glu-Ser-Tyr-Thr-Glu-Lys/Leu-Tyr-Arg-Pro.

• Journal of Korean Society of Forest Science
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• v.98 no.6
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• pp.712-718
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• 2009

To look into the degree of the long distance movement of the air pollution within Mt. Kyebang, Hongcheon, one of the clean regions, major ions, components of collected wet precipitation, were analyzed by using the ion chromatography after measuring pH and electrical conductivity. The quality assurance of chemical composition data was checked by considering the ion balance and electrical conductivity. Also, the pH of precipitation showed in the pH5.0~5.5 range, less than the pH5.6 in which the standards of the acid precipitation. On the whole, the more precipitation got, the less ion concentration became.: It could showed what it influenced on the fluctuation of the precipitation pH according to fluctuation and neutralization of the according materials. In the meantime, as composition ratios of wet deposition, ${SO_4}^{2-}$ and $nss-{SO_4}^{2-}$, ${NH_4}^+$ and $nss-Ca^{2+}$ accounted for high percentage. Especially, as the concentration of ${SO_4}^{2-}$, the artificial pollutant, and $Ca^{2+}$, the soil substance, showed high, Mt. Kyebang, Hongcheon having barely fixed air-pollutants sources was most likely to be influenced by the pollutants moved from long distances.

• Preventive Nutrition and Food Science
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• v.15 no.2
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• pp.105-112
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• 2010

Thirty-four strains of Lactobacillus species were isolated from soil and eight of these isolates (M1-4 and P1-4) were capable of growing on red ginseng agar. The M1 and P2 strains were determined to be L. plantarum and other strains (M2, M3, M4, P1, P3 and P4) were determined to be L. brevis. Fermentation of red ginseng extract (RGE) with strains M1, M2, P2 and P4 resulted in a low level of total carbohydrate content (174.3, 170.0, 158.8 and 164.8 mg/mL, respectively). RGE fermented by M3 showed a higher level of uronic acid than the control. The polyphenol levels in RGE fermented by M1, P1 and P2 (964.9, 941.7 and $965.3\;{\mu}g/mL$, respectively) were higher than the control ($936.8\;{\mu}g/mL$). Total saponin contents in fermented RGE (except M1) were higher than the control. RGE fermented by M2 and M3 had the highest levels of total ginsenosides (31.7 and 32.7 mg/mL, respectively). The levels of the ginsenoside Rg3 increased from 2.6 mg/mL (control) to 3.0 mg/mL (M2) or 3.1 mg/mL (M3). RGE fermented by M2 and M3 also had the highest levels of Rg5+Rk1 (7.7 and 8.3 mg/mL, respectively). Metabolite contents of ginsenoside (sum of CK, Rh1, Rg5, Rk1, Rg3 and Rg2) of M2 (13.0 mg/mL) and M3 (13.9 mg/mL) were also at a high level among the fermented RGE. Protopanaxadiol and protopanaxatriol content of ginsenoside of M2 (10.9 and 5.4 mg/mL, respectively) and M3 (11.0 and 5.7 mg/mL, respectively) were at higher levels than other fermented RGE.

• Asian-Australasian Journal of Animal Sciences
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• v.28 no.1
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• pp.143-150
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• 2015

The objective of this study was to evaluate the effects of different litter mixture compositions on bedding system temperature, pH and volatile fatty acid and ammonia-N ($NH_3$-N) content, and the serum physico-chemical parameters and growth indices of calves. Thirty-two Limousin calves ($280{\pm}20kg$) were randomly assigned to four groups (n = 8 for each group) according to the bedding system used: i) control with soil only (CTR); ii) mixture with 50% paddy hulls (PH), 30% saw dusts (SD), 10% peat moss (PM) and 10% corn cobs (CC) (TRT1); iii) mixture with 15% PH, 15% SD, 10% PM, 40% CC, and 20% corn stover (CS) (TRT2); iv) mixture with 30% PH, 10% PM, 40% CC, and 20% CS (TRT3). The litter material combinations of different treatments were based on the cost of bedding system materials in China. The cost of four treatments from low to high: Control$NH_3$-N level (271.83 to 894.72 mg/kg) was lowest for TRT1 (p<0.0001) and highest for TRT2 (p<0.0001). The acetate, propionate and butyrate levels were highest for the control group (p<0.0001). In all the groups, the pH value (6.90 to 9.09) increased at the beginning and later remained stable at below 9.09. The temperature of deep litter increased at the first week and reached the maximum ($42.1^{\circ}C$) on day 38. 3,5,3'-Triiodothyronine ($T_3$) levels in the TRT1 group animals (p<0.0001) were lower than those in the control and TRT2 animals. 3,5,3',5'-Tetraiodothyronine ($T_4$) in the TRT1 group (p = 0.006) was lower than that in the other treatment groups. Cortisol (COR) in the control and TRT1 group was lower (p<0.0001) than that in the TRT2 and TRT3 groups. Corticosterone (CORt) in the control group was higher (p<0.0001) than that in the treatment groups. The findings indicate that the deep litter bedding systems provided better conditions for animal health and growth performance compared with the control system. Furthermore, the litter composition of TRT1 was found to be optimal among the three treatment groups.