• 한국약용작물학회:학술대회논문집
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• 한국약용작물학회 2009년도 심포지엄 및 춘계학술발표회
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• pp.175-176
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• 2009

• BMB Reports
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• 제46권9호
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• pp.439-447
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• 2013

Rice is a monocot gramineous crop, and one of the most important staple foods. Rice is considered a model species for most gramineous crops. Extensive research on rice has provided critical guidance for other crops, such as maize and wheat. In recent years, climate change and exacerbated soil degradation have resulted in a variety of abiotic stresses, such as greenhouse effects, lower temperatures, drought, floods, soil salinization and heavy metal pollution. As such, there is an extremely high demand for additional research, in order to address these negative factors. Studies have shown that the alternative splicing of many genes in rice is affected by stress conditions, suggesting that manipulation of the alternative splicing of specific genes may be an effective approach for rice to adapt to abiotic stress. With the advancement of microarrays, and more recently, next generation sequencing technology, several studies have shown that more than half of the genes in the rice genome undergo alternative splicing. This mini-review summarizes the latest progress in the research of splicing and alternative splicing in rice, compared to splicing in humans. Furthermore, we discuss how additional studies may change the landscape of investigation of rice functional genomics and genetically improved rice.

• Journal of Plant Biotechnology
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• 제43권1호
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• pp.1-11
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• 2016

Single nucleotide polymorphism (SNP) is an abundant form of genetic variation within individuals of species. DNA polymorphism can arise throughout the whole genome at different frequencies in different species. SNP may cause phenotypic diversity among individuals, such as individuals with different color of plants or fruits, fruit size, ripening, flowering time adaptation, quality of crops, grain yields, or tolerance to various abiotic and biotic factors. SNP may result in changes in amino acids in the exon of a gene (asynonymous). SNP can also be silent (present in coding region but synonymous). It may simply occur in the noncoding regions without having any effect. SNP may influence the promoter activity for gene expression and finally produce functional protein through transcription. Therefore, the identification of functional SNP in genes and analysis of their effects on phenotype may lead to better understanding of their impact on gene function for varietal improvement. In this mini-review, we focused on evidences revealing the role of functional SNPs in genes and their phenotypic effects for the purpose of crop improvements.

• Journal of Plant Biotechnology
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• 제39권3호
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• pp.175-181
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• 2012

Drought and high salinity stresses often imposes adverse effects on crop yield. MYB transcription factors have been shown to be an important regulator in defense responses to these environmental stresses. In this study, we have cloned and characterized a soybean gene GmMYB184 (Glycine max MYB transcription factor 184). Deduced amino acid sequences of GmMYB184 show highest homology with that from Vitis vinifera legume plant (75%). Different expression patterns of GmMYB184 mRNA were observed subjected to drought, cold, high salinity stress and abscisic acid treatment, suggesting its role in the signaling events in the osmotic stress-related defense response. Subcellular localization studies demonstrated that the GFP-GmMYB184 fusion protein was localized in the nucleus. Using the yeast assay system, the C-terminal region of GmMYB184 was found to be essential for the transactivation activity. These results indicate that the GmMYB184 may play a role in abiotic stress tolerance in plant.

• Fisheries and Aquatic Sciences
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• 제2권2호
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• pp.199-209
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• 1999

Before investigating the long-term variations in macrobenthic communities sampled in the Chokchon macrotidal flat in Inchon, Korea, from 1989 to 1996, we need to understand how environmental factors in the area vary. As potential governing agents of tidal flat communities, abiotic factors such as mean sea level, seawater, air temperature, and precipitation were considered. Data for these factors were collected at equal intervals from 1976 or 1980 to 1996, and were analyzed using a decomposition method. In this analysis, all the above variables showed strong seasonal nature, and yielded a significant trend and cyclical variation. Positive trends were seen in the seawater and air temperatures, and based upon this relationship, it was found that the biological sampling period of our program has been carried out during warmer periods in succession. This paper puts forth some hypotheses concerning the response of tidal flat macrobenthos communities to the changing environment including mild winters in succession.

• Mycobiology
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• 제38권4호
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• pp.238-248
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• 2010

This review provides background information on the importance of bioremediation approaches. It describes the roles of fungi, specifically white rot fungi, and their extracellular enzymes, laccases, ligninases, and peroxidises, in the degradation of xenobiotic compounds such as single and mixtures of pesticides. We discuss the importance of abiotic factors such as water potential, temperature, and pH stress when considering an environmental screening approach, and examples are provided of the differential effect of white rot fungi on the degradation of single and mixtures of pesticides using fungi such as Trametes versicolor and Phanerochaete chrysosporium. We also explore the formulation and delivery of fungal bioremedial inoculants to terrestrial ecosystems as well as the use of spent mushroom compost as an approach. Future areas for research and potential exploitation of new techniques are also considered.

• Journal of the korean society of oceanography
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• 제37권4호
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• pp.201-211
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• 2002

We investigated the abundance and biomass of dinoflagellates and factors controlling their abundance in marine planktonic ecosystems in Korean coastal waters. The abundance of photosynthetic (PDNF) and heterotrophic dinoflagellates (HDNF) was in the range of 0.7${\times}$10$^2$ cells/1-14.0${\times}$10$^6$ cells/1 and in the range of 3.0${\times}$10$^2$ cells/1-6.47${\times}$10$^5$ cells/I, respectively. Their biomass was 0.5${\times}$10$^{-1}$-2.56${\times}$10$^4$ ${\mu}gC/I$ and 2.0${\times}$10$^{-1}$-1.5${\times}$10$^{2}$ ${\mu}gC/I$, respectively. In order to find factors controlling their abundance, stepwise regression and best subsets regression analyses were used. We found that during the summer the most important factors controlling PDNF abundance are DO, P, N and S (abiotic factors), and for HDNF, the abundance of zooplankton, ciliates and HF (biotic factors), and that high turbidity may effect the distribution of dinoflagellate species.

• 한국수산과학회지
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• 제50권1호
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• pp.65-76
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• 2017

Since the late 1990s, walleye pollock Gadus chalcogrammus fisheries in Korean waters have been considered collapsed. Although many fisheries scientists suspect that the collapse might have been triggered by overexploitation of juvenile pollock or environmental changes, such conjectures have been neither tested nor investigated, partially because of limited data on the population. There has been no survey of the population, and the ages of fish in fishery catch have rarely been identified. Instead, fishery catch data from 1975-1997 included information about two life stages, 'juveniles and adults,' and data on catch-per-unit-effort (CPUE) during 1963-2007 and those on fish length and weight during 1965-2003 had been sporadically collected from commercial fisheries. To test hypotheses about the collapse of the pollock fisheries, we used a statistical linear model with juvenile CPUE as the response variable, and abiotic (e.g., water temperatures) and biotic factors [e.g., adult pollock, flatfishes (Pleuronectidae sp.), and sandfish (Arctoscopus japonicus) CPUEs] as the explanatory variables. The model results indicated that depletion of the pollock population was associated with both biotic (adult pollock and flatfishes abundance) and abiotic factors (mid-water temperatures in February and October). We further interpreted the results from ecological and biological perspectives, suggesting possible mechanisms.

• 한국균학회지
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• 제20권2호
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• pp.109-117
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• 1992

운동성을 띠는 5가지 부생균과 1종류의 식물병원세균으로 Agrobacterium radiobacter, Bacillus subtilis, B. polymyxa, Pseudomonas aeruginosa, P. fluorescens 및 Xanthomonas malvacearum을 공시하여 이들 세균이 Cochliobolus sativus 분생포자, Fusarium oxysporum f. sp. ciceri의 후막포자, Macrophomina phaseolina의 균핵 및 Phytophthora drechsleri f. sp. cajani 난포자의 분비물에 미치는 화학주성을 서로 다른 무생물적 조건하에서 실험하였다. 균의 분비물의 농도와 세균세포의 끌리는 유인사이에는 정상관$(r=0.76{\sim}0.89)$이 있었다. 유사한 결과로서 화학주성반응과 배양간격에서도 통계적인 정상관이 있다$(r=0.82{\sim}0.95)$. 세균의 화학주성반응은 온도와 pH에 크게 영향을 받는다. 최적 화학주성을 나타내는 온도로서 A. radiobacter는 $25^{\circ}C$, B. polymyxa, P. aerugionosa, p. fluorescens and X. madracearum은 $30^{\circ}C$이었고, B. subtilis는 $35^{\circ}C$가 최적이었다. 최대 화학주성을 나타내는 분비물의 주성은 pH7이고 pH3과 11에서는 buffer와 같았다. 시험용 모세관에 유인물질이나 buffer 중 어느 종류가 채워져도 유인물질이 있는 시험관에 연결되면 세균은 주성이 나타난다는 것이 증명되었다.

• 한국산림과학회지
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• 제106권1호
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• pp.1-9
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• 2017

산림 벌채 후 형성되는 가장자리 효과의 발생 여부과 회복 과정을 이해하는 것은 생태계 천이와 경관 및 서식지의 공간 영향을 분석하고 이해하는 필수 요소임에도 불구하고, 우리나라에서 관련 주제의 실증 연구는 찾아보기 어렵다. 본 연구는 강원 남부 지역의 소나무림 벌채 후 1, 3, 10, 16년이 경과한 장소에 형성된 벌채지 및 임내 가장자리에서 비생물 및 생물 요인의 변화 양상을 선 (20개) 및 방형구 (340개) 조사법을 병용하여 조사하였다. 벌채 후 초기(3년 이내)는 가장 자리에서 인접 숲 내부 방향으로, 15m 깊이까지 식생 피도, 풍부도, 수관 열림도, 그리고 대기 온도 및 습도가 급격하게 변화하였다. 가장자리 형성 이후, 비생물 요인 및 식물 풍부도의 안정화는 각각 10년 및 16년이 소요되었다. 교목종이 초본식물에 비하여 가장자리 환경에서 더 높은 증가 양상을 나타내었고, 교목종의 높은 증가는 하층식생의 동태에 영향을 주었다. 본 연구 결과를 통해 벌채에 의한 직 간접적인 서식지 변화는 최소 인접 산림의 15 m에서 20 m까지, 그리고 16년 수준까지 지속적으로 영향을 미치는 것으로 나타났다. 본 연구 결과는 경관 및 서식지 패치 평가에 필수적인 가장자리 효과의 깊이에 대한 첫 국내 첫 실증 연구자료로 친환경벌채 기준제시 등 활용성이 높다.