• Bulletin of the Korean Chemical Society
• /
• 제26권1호
• /
• pp.32-33
• /
• 2005

• Bulletin of the Korean Chemical Society
• /
• 제19권10호
• /
• pp.1073-1079
• /
• 1998

The potential energy surface (PES) of the non-identical SN2 reactions, F- + CH3Cl → FCH3 + Cl and (H2O)F + CH3Cl → FCH3 + Cl-(H2O), were investigated with ab initio MO calculations. The ab initio minimum energy reaction path (MERP) of the F- + CH3Cl → FCH3 + Cl- was obtained and it was expressed with an intermediate variable t. The ab initio PES was obtained near around t. Analytical potential energy function (PEF) was determined as a function of the t in order to reproduce the ab initio PES. Based on Morse-type potential energy function, a Varying Repulsive Cores Model (VRCM) was proposed for the description of the bond forming and the bond breaking which occur simultaneously during the SN2 reaction. The MERP calculated with the PEF is well agreed with the ab initio MERP and PEF could reproduce the ab initio PES well. The potential parameters for the interactions between the gas phase molecules in the reactions and water were also obtained. ST2 type model was used for the water.

• Bulletin of the Korean Chemical Society
• /
• 제10권4호
• /
• pp.377-381
• /
• 1989

The spectroscopic properties of $FO^+$ and FO were investigated by ab initio calculation. Several different levels of theory, $MP3/6-31G^*,\;MP4/6-311G^*\;and\;CISD/6-31G^*$, were tried and compared with experimental results of FO. In the overall performance the CISD showed the best agreement. Based on these results the spectroscopic constants of $FO^+$ are predicted.

• 대한화학회지
• /
• 제27권5호
• /
• pp.320-329
• /
• 1983

$\alpha$-아미노알킬라디칼들에 대한 안정화에너지를 검토하기 위하여 반경험적 분자궤도함수계산법인 MINDO/3-RHF 방법을 이용하여 고찰하고 비경험적 방법인 ab initio 및 실험적인 연구결과들과 비교하였다. 결과로써 라디칼들의 안정화에너지는 ab initio결과와 일치하게 나타났으며 실험결과와는 상반되게 나타났다. 그리고 라디칼들의 구조도 구조연구를 위해 더 적합하다고 알려진 ab initio 결과와 다르게 나타났다. 그러나 여러가지 증거에 의해 안정화에너지에 관한한 실험과 이론관의 상반된 결과를 일으키는 2가지 요인즉 (1) 실험결과 처리에서의 오차 (2)이온에서의 correlation을 고려하지 않았다는 점 가운데 후자가 더 크게 작용한다는 것을 알 수 있었으며 정성적으로 correlation을 고려했을 때는 실험과 일치하는 경향을 얻었다. 결국 correlation을 고려한 방법을 썼을 경우 실험과 일치하는 경향성을 보일 것으로 예측되었다.

• Bulletin of the Korean Chemical Society
• /
• 제22권6호
• /
• pp.633-634
• /
• 2001

• 대한화학회지
• /
• 제50권3호
• /
• pp.203-207
• /
• 2006

K+(C2H5OH)n, (n=1~5) 착물에 대한 구조와 결합에너지에 대하여 MP2/full gen 6d와 MP2/6-311G**의 방법으로 계산하였다. n이 증가함에 따라 착물의 형태는 선형, 삼각형, 정사면체, 삼각이중피라밋 형태를 갖는 것으로 나타났고 K+-O의 길이는 용매 분자수가 증가함에 따라 증가하고 ∠K+OC도 증가하며 ∠K+OH는 n이 증가함에 따라 감소함을 보였다. 결합에너지는 n이 증가함에 따라 증가하나 순차적으로 증가하는 폭은 n이 커질수록 감소함을 볼 수 있었고 이는 용매분자간의 상호작용이 많은 영향을 주고 있는 것으로 나타났다.

• 한국생물정보학회:학술대회논문집
• /
• 한국생물정보시스템생물학회 2000년도 International Symposium on Bioinformatics
• /
• pp.32-34
• /
• 2000

Computational chemistry is a discipline using computational methods for the calculation of molecular structure, properties, and reaction or for the simulation of molecular behavior. Relating and turning the complexity of data from genomics, high-throughput screening, combinatorial chemical synthesis, gene-expression investigations, pharmacogenomics, and proteomics into useful information and knowledge is the primary goal of bioinformatics. In particular, the structure-based molecular design is one of essential fields in bioinformatics and it can be called as structural bioinformatics. Therefore, the conformational analysis for proteins and peptides using the techniques of computational chemistry is expected to play a role in structural bioinformatics. There are two major computational methods for conformational analysis of proteins and peptides; one is the molecular orbital (MO) method and the other is the force field (or empirical potential function) method. The MO method can be classified into ab initio and semiempirical methods, which have been applied to relatively small and large molecules, respectively. However, the improvement in computer hardwares and softwares enables us to use the ab initio MO method for relatively larger biomolecules with up to v100 atoms or ∼800 basis functions. In order to show how computational chemistry can be used in structural bioinformatics, 1 will present on (1) cis-trans isomerization of proline dipeptide and its derivatives, (2) positional preference of proline in ${\alpha}$-helices, and (3) conformations and activities of Arg-Gly-Asp-containing tetrapeptides.

• EDISON SW 활용 경진대회 논문집
• /
• 제2회(2013년)
• /
• pp.214-216
• /
• 2013

The atomic and electronic properties of molybdenum disurfide ($MoS_2$) nanostructures are investigated through density functional theory (DFT) calculations. We find that the band gap is indirect (about 1.79 eV) and direct (about 1.84 eV) in GGA for 2-dimensional $MoS_2$ in our calculations. On the other hand, 1-dimensional armchair nanoribbons have semiconductor properties (band gap is about 0.11~0.28 eV), while 1-dimensional zigzag nanoribbons are metallic.

• 대한화학회지
• /
• 제30권2호
• /
• pp.166-171
• /
• 1986

반경험적 분자궤도함수법인 MINDO/3방법을 사용하여 수소원자 전달반응인$ RNH_2+CH_3{\to} RNH+CH_4$(여기서 R=H, $CH_3$)에 관해 연구하였다. 그결과 $CH_3$와 $NH_3$간에 안정한 착물의 존재가 예상되었다. 또한 이들 반응들에 대한 활성화엔트로피를 포함해서 활성화파라메타를 결정하였으며 그 결과 절대엔트로피와 활성화 엔트로피의 경우에 비교가 가능한 곳에는 ab initio 및 실험결과와 잘 일치하였다.

• Bulletin of the Korean Chemical Society
• /
• 제25권11호
• /
• pp.1657-1660
• /
• 2004

Several critical geometries associated with the rearrangement of $CH_3SNO_2\;to\;CH_3SONO$ are calculated with the density functional theory (DFT) method and compared with those of the ab initio molecular orbital methods. There are two probable pathways for this rearrangement, one involving the transition state of an oxygen migration and the other through the homolytic decomposition to radicals. The reaction barrier via the transition state is about 60 kcal/mol and the decomposition energy into radicals about 35 kcal/mol, suggesting that the reaction pathway via the homolytic cleavage to radical species is energetically favorable. Since even the homolytic cleavage requires large energies, the rearrangement reaction is unlikely without the aid of catalysts.