• Title/Summary/Keyword: ATES

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CYP1A1 (Ile462Val), CYP1B1 (Ala119Ser and Val432Leu), GSTM1 (null), and GSTT1 (null) Polymorphisms and Bladder Cancer Risk in a Turkish Population

  • Berber, Ufuk;Yilmaz, Ismail;Yilmaz, Omer;Haholu, Aptullah;Kucukodaci, Zafer;Ates, Ferhat;Demirel, Dilaver
    • Asian Pacific Journal of Cancer Prevention
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    • v.14 no.6
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    • pp.3925-3929
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    • 2013
  • We aimed to investigate bladder cancer risk with reference to polymorphic variants of cytochrome p450 (CYP) 1A1, CYP1B1, glutathione S-transferase (GST) M1, and GSTT1 genes in a case control study. Polymorphisms were examined in 114 bladder cancer patients and 114 age and sex-matched cancer-free subjects. Genotypes were determined using allele specific PCR for CYP1A1 and CYP1B1 genes, and by multiplex PCR and melting curve analysis for GSTM1 and GSTT1 genes. Our results revealed a statistically significant increased bladder cancer risk for GSTT1 null genotype carriers with an odds ratio of 3.06 (95% confidence interval=1.39-6.74, p=0.006). Differences of CYP1A1, CYP1B1 and GSTM1 genotype frequencies were not statistically significant between patients and controls. However, the specific combination of GSTM1 null, GSTT1 null, and CYP1B1 codon 119 risk allele carriers and specific combination of GSTM1 present, GSTT1 null, and CYP1B1 432 risk allele carriers exhibited increased cancer risk in the combined analysis. We did not observe any association between different genotype groups and prognostic tumor characteristics of bladder cancer. Our results indicate that inherited absence of GSTT1 gene may be associated with bladder cancer susceptibility, and specific combinations of GSTM1, GSTT1 and CYP1B1 gene polymorphisms may modify bladder cancer risk in the Turkish population, without any association being observed for CYP1A1 gene polymorphism and bladder cancer risk.

Effects of Culture fitrates of Fusarium oxysporum f. vasinfetium upon the germination of seeds of host plants (Sesame and Cotton) and noon-host(Wheat and rice) (참깨$\cdot$시들음병균(Fusarium oxysporun f. vasinfectum)의 배양여액이 기주식물 (참깨, 복화)과 비기주식물(밀, 벼)의 종자 발아에 미치는 영향)

  • CHOI Chang Yoel
    • Korean journal of applied entomology
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    • v.1
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    • pp.42-46
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    • 1962
  • 1) The purpcse of the present study is to investigate the effects of culture filtrates of Fuarsium oxysporum f. vasinfectum which is known to produce wilt toxin (fusaric acid) on the germination of host plants (sesame, cotton) and non-host plants (wheat, rice). 2) The experiment on the germination of sesame, cotton, wheat and rice seeds in the seed beds separately added with culture filtr ates of 10 differential strains of Fusarium oxysporom f. vasinfectum demonstrated that culture filtrates of most strains of the fungus inhibit or retard the germination of seeds of 4 plants used in this study while those of a few strains do not give notable influence on the germination of seeds of those plants. a) Culture filtrates of strain 201 of the fungus strongly inhibited the germination of seeds of those plants in nearly same degree, but culture filtrates of the other strains, 281, 321, etc., showed remarkable differences in the toxicity inhibiting or retarding the germination of the seeds of those plants. b) In general, sesame seeds are greatly susceptible, wheat and cotton seeds are moderately susceptible and rice seeds are resistant to the toxicity of culture filtrates of the fungus. 3) In the soil containing a number of differential strains of Fusarium oxysporum f. vasinfectum, the germination of seeds and also the growth of seedlings of non-host plants are possibly checked by the toxic substance, fusaric acid produced by the fungus.

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Peel strength of denture liner to PMMA and polyamide: laser versus air-abrasion

  • Korkmaz, Fatih Mehmet;Bagis, Bora;Ozcan, Mutlu;Durkan, Rukiye;Turgut, Sedanur;Ates, Sabit Melih
    • The Journal of Advanced Prosthodontics
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    • v.5 no.3
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    • pp.287-295
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    • 2013
  • PURPOSE. This study investigated the effect of laser parameters and air-abrasion on the peel strength of silicon-based soft denture liner to different denture resins. MATERIALS AND METHODS. Specimens (N=180) were prepared out of three different denture base resins (Rodex, cross-linked denture base acrylic resin; Paladent, heat-cured acrylic resin; Deflex, Polyamide resin) ($75mm{\times}25mm{\times}3mm$). A silicon-based soft denture liner (Molloplast B) was applied to the denture resins after the following conditioning methods: a) Air-abrasion ($50{\mu}m$), b) Er,Cr:YSGG laser (Waterlase MD Turbo, Biolase Technology) at 2 W-20 Hz, c) Er,Cr:YSGG laser at 2 W-30 Hz, d) Er,Cr:YSGG laser at 3 W-20 Hz, e) Er,Cr:YSGG laser at 3 W-30 Hz. Non-conditioned group acted as the control group. Peel test was performed in a universal testing machine. Failure modes were evaluated visually. Data were analyzed using two-way ANOVA and Tukey's test (${\alpha}$=.05). RESULTS. Denture liner tested showed increased peel strength after laser treatment with different parameters ($3.9{\pm}0.4-5.58{\pm}0.6$ MPa) compared to the control ($3.64{\pm}0.5-4.58{\pm}0.5$ MPa) and air-abraded groups ($3.1{\pm}0.6-4.46{\pm}0.3$ MPa), but the results were not statistically significant except for Paladent, with the pretreatment of Er,Cr:YSGG laser at 3 W-20 Hz. Polyamide resin after air-abrasion showed significantly lower peel strength than those of other groups ($3.1{\pm}0.6$ MPa). CONCLUSION. Heat-cured acrylic resin, PMMA, may benefit from Er,Cr:YSGG laser treatment at 3 W-20 Hz irradiation. Air-abrasion of polyamide resins should be avoided not to impair their peel bond strengths to silicon-based soft denture liners.

The Role and Regulation of MCL-1 Proteins in Apoptosis Pathway

  • Bae, Jeehyeon
    • Proceedings of the Korean Society of Applied Pharmacology
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    • 2002.07a
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    • pp.113-113
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    • 2002
  • Phylogenetically conserved Bcl-2 family proteins play a pivotal role in the regulation of apoptosis from virus to human. Members of the Bcl-2 family consist of antiapoptotic proteins such as Bcl-2, Bcl-xL, and Bcl-w, and proapoptotic proteins such as BAD, Bax, BOD, and Bok. It has been proposed that anti- and proapoptotic Bcl-2 proteins regulate cell death by binding to each other and forming heterodimers. A delicate balance between anti- and proapoptotic Bcl-2 family members exists in each cell and the relative concentration of these two groups of proteins determines whether the cell survives or undergoes apoptosis. Mcl-1 (Myeloid cell :leukemia-1) is a member of the Bcl-2 family proteins and was originally cloned as a differentiation-induced early gene that was activated in the human myeloblastic leukemia cell line, ML-1 . Mcl-1 is expressed in a wide variety of tissues and cells including neoplastic ones. We recently identified a short splicing variant of Mcl-1 short (Mcl-IS) and designated the known Mcl-1 as Mcl-1 long (Mcl-lL). Mcl-lL protein exhibits antiapoptotic activity and possesses the BH (Bcl-2 homology) 1, BH2, BH3, and transmembrane (TM) domains found in related Bcl-2 proteins. In contrast, Mcl-1 S is a BH3 domain-only proapoptotic protein that heterodimerizes with Mcl-lL. Although both Mc1-lL and Mcl-lS proteins contain BH domains fecund in other Bcl-2 family proteins, they are distinguished by their unusually long N-terminal sequences containing PEST (proline, glutamic acid, serine, and threonine) motifs, four pairs of arginine residues, and alanine- and glycine-rich regions. In addition, the expression pattern of Mcl-1 protein is different from that of Bcl-2 suggesting a unique role (or Mcl-1 in apoptosis regulation. Tankyrasel (TRF1-interacting, ankyrin-related ADP-related polymerasel) was originally isolated based on its binding to TRF 1 (telomeric repeat binding factor-1) and contains the sterile alpha motif (SAM) module, 24 ankyrin (ANK) repeats, and the catalytic domain of poly(adenosine diphosphate-ribose) polymerase (PARP). Previous studies showed that tankyrasel promotes telomere elongation in human cells presumably by inhibiting TRFI though its poly(ADP-ribosyl)action by tankyrasel . In addition, tankyrasel poly(ADP-ribosyl)ates Insulin-responsive amino peptidase (IRAP), a resident protein of GLUT4 vesicles, and insulin stimulates the PARP activity of tankyrase1 through its phosphorylation by mitogen-activated protein kinase (MAPK). ADP-ribosylation is a posttranslational modification that usually results in a loss of protein activity presumably by enhancing protein turnover. However, little information is available regarding the physiological function(s) of tankyrase1 other than as a PARP enzyme. In the present study, we found tankyrasel as a specific-binding protein of Mcl-1 Overexpression of tankyrasel led to the inhibition of both the apoptotic activity of Mel-lS and the survival action of Mcl-lL in mammalian cells. Unlike other known tankyrasel-interacting proteins, tankyrasel did not poly(ADP-ribosyl)ate either of the Mcl-1 proteins despite its ability to decrease Mcl-1 proteins expression following coexpression. Therefore, this study provides a novel mechanism to regulate Mcl-1-modulated apoptosis in which tankyrasel downregulates the expression of Mcl-1 proteins without the involvement of its ADP-ribosylation activity.

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A Methodology for Translation of Operating System Calls in Legacy Real-time Software to Ada (Legacy 실시간 소프트웨어의 운영체제 호출을 Ada로 번역하기 위한 방법론)

  • Lee, Moon-Kun
    • The Transactions of the Korea Information Processing Society
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    • v.4 no.11
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    • pp.2874-2890
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    • 1997
  • This paper describes a methodology for translation of concurrent software expressed in operating system (OS) calls to Ada. Concurrency is expressed in some legacy software by OS calls that perform concurrent process/task control. Examples considered in this paper are calls in programs in C to Unix and calls in programs in CMS-2 to the Executive Service Routines of ATES or SDEX-20 other software re/reverse engineering research has focused on translating the OS calls in a legacy software to calls to another OS. In this approach, the understanding of software has required knowledge of the underlying OS, which is usually very complicated and informally documented. The research in this paper has focused on translating the OS calls in a legacy software into the equivalent protocols using the Ada facilities. In translation to Ada, these calls are represented by Ada equivalent code that follow the scheme of a message-based kernel oriented architecture. To facilitate translation, it utilizes templates placed in library for data structures, tasks, procedures, and messages. This methodology is a new approach to modeling OS in Ada in software re/reverse engineering. There is no need of knowledge of the underlying OS for software understanding in this approach, since the dependency on the OS in the legacy software is removed. It is portable and interoperable on Ada run-time environments. This approach can handle the OS calls in different legacy software systems.

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Glial Cell Line-Derived Neurotrophic Factor, S-100 Protein and Synaptophysin Expression in Biliary Atresia Gallbladder Tissue

  • Gurunluoglu, Semra;Ceran, Canan;Gurunluoglu, Kubilay;Kocbiyik, Alper;Gul, Mehmet;Yildiz, Turan;Bag, Harika Gozukara;Gul, Semir;Tasci, Aytac;Bayrakci, Ercan;Akpinar, Necmettin;Cin, Ecem Serbest;Ates, Hasan;Demircan, Mehmet
    • Pediatric Gastroenterology, Hepatology & Nutrition
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    • v.24 no.2
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    • pp.173-186
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    • 2021
  • Purpose: Biliary atresia (BA) is a disease that manifests as jaundice after birth and leads to progressive destruction of the ductal system in the liver. The aim of this study was to investigate histopathological changes and immunohistochemically examine the expression of glial cell line-derived neurotrophic factor (GDNF), synaptophysin, and S-100 protein in the gallbladder of BA patients. Methods: The study included a BA group of 29 patients and a control group of 41 children with cholecystectomy. Gallbladder tissue removed during surgery was obtained and examined immunohistochemically and histopathologically. Tissue samples of both groups were immunohistochemically assessed in terms of GDNF, S-100 protein, and synaptophysin expression. Expression was classified as present or absent. Inflammatory activity assessment with hematoxylin and eosin staining and fibrosis assessment with Masson's trichrome staining were performed for tissue sample sections of both groups. Results: Ganglion cells were not present in gallbladder tissue samples of the BA group. Immunohistochemically, GDNF, synaptophysin, and S-100 expression was not detected in the BA group. Histopathological examination revealed more frequent fibrosis and slightly higher inflammatory activity in the BA than in the control group. Conclusion: We speculate that GDNF expression will no longer continue in this region, when the damage caused by inflammation of the extrahepatic bile ducts reaches a critical threshold. The study's findings may represent a missing link in the chain of events forming the etiology of BA and may be helpful in its diagnosis.