• Title/Summary/Keyword: 3D (3Dimensional)

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A Molecular Modeling Study of AAD16034

  • Cho, Hoon;Choi, Cheol-Hee;Yoo, Kyung-Ho;Cho, Seung-Joo
    • Molecular & Cellular Toxicology
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    • v.4 no.4
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    • pp.307-310
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    • 2008
  • AAD16034 is an alginate lyase from Pseudoalteromonas sp. IAM14594. A very close homologue with known 3D structure exists (marine bacterium Pseudoalteromonas sp. strain no. 272). A three-dimensional structure of AAD16034 was generated based on this template (PDB code: 1J1T) by comparative modeling. The modeled enzyme exhibited a jelly-roll like structure very similar to its template structure. Both enzymes possess the characteristic alginate sequence YFKhG+Y-Q. Since AAD16034 displays enzymatic activity for poly-M alginate, docking of a tri-mannuronate into the modeled structure was performed. Two separate and adjacent binding sites were found. The ligand was accommodated inside each binding site. By considering both binding sites, a plausible binding pose for the poly-M alginate polymer could be deduced. From the modeled docking pose (i.e., the most important factor that attracts alginate polymer into this lyase) the most likely interaction was electrostatic. In accordance with a previous report, the hydroxyl group of Y345 was positioned close to the ${\alpha}$-hydrogen of ${\beta}$-mannuronate, which was suitable to initiate a ${\beta}$-elimination reaction. K347 was also very near to the carboxylatemoiety of the ligand, which might stabilize the dianion intermediate during the ${\beta}$-elimination reaction. This implies that the characteristic alginate sequence is absolutely crucial for the catalysis. These results may be exploited in the design of novel enzymes with desired properties.

Quantitative Measurement of Soot concentration by Two-Wavelength Correction of Laser-Induced Incandescence Signals (2파장 보정 Laser-Induced Incandescence 법을 이용한 매연 농도 측정)

  • 정종수
    • Transactions of the Korean Society of Automotive Engineers
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    • v.5 no.3
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    • pp.54-65
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    • 1997
  • To quantify the LII signals from soot particle of flames in diesel engine cylinder, a new method has been proposed for correcting LII signal attenuated by soot particles between the measuring point and the detector. It has been verified by an experiment on a laminar jet ethylene-air diffusion flame. Being proportional to the attenuation, the ratio of LII signal at two different detection wavelengths can be used to correct the measured LIIsignal and obtain the unattenuated LII signal, from which the soot volume fraction in the flame can be estimated. Both the 1064-nm and frequency-doubled 532-nm beams from the Nd : YAG laser are used. Single-shot, one-dimensional(1-D) line images are recorded on the intensified CCD camera, with the rectangular-profile laser beam using 1-mm-diameter pinhole. Two broadband optical interference filters having the center wavelengths of 647 nm and 400 nm respectively and a bandwidth of 10 nm are used. This two-wavelength correction has been applied to the ethylene-air coannular laminar diffusion flame, previously studied on soot formation by the laser extinction method in this laboratory. The results by the LII measurement technique and the conventional laser extinction method at the height of 40 nm above the jet exit agreed well with each other except around outside of the peaks of soot concentration, where the soot concentration was relatively high and resulting attenuation of the LII signal was large. The radial profile shape of soot concentration was not changed a lot, but the absolute value of the soot volume fraction around outside edge changed from 4ppm to 6.5 ppm at r=2.8mm after correction. This means that the attenuation of LII signal was approximately 40% at this point, which is higher than the average attenuation rate of this flame, 10~15%.

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Study on the Optimum Design of High Pressure Common-rail DME Injector Nozzle with Consideration of Cavitation (공동현상을 고려한 커먼레일용 고압 DME 인젝터 노즐의 최적 설계 연구)

  • Jeong, Soo-Jin;Park, Jung-Kwon;Lee, Sang-In
    • Transactions of the Korean Society of Automotive Engineers
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    • v.21 no.1
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    • pp.99-106
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    • 2013
  • DME (Di-Methyl Ether) is synthetic product that is produced through dehydration of methanol or a direct synthesis from syngas. And it is able to save fossil fuel and reduce pollutants of emission such as PM and $CO_2$. In spite of its advantages it is difficult to design DME fuelled engine system because DME fuel may cause to severely generate cavitation and corrosion in fuel delivery system due to physical properties of DME. Therefore, in this study three-dimensional internal flow characteristics with consideration of cavitation were predicted in the DME injector using diesel and DME fuel. Moving grid technique was employed to describe needle motion and 1-D hydraulic simulation of injector was also simulated to obtain transient needle motion profiles. The results of simulation show that cavitations was generated at the inlet of nozzle near high velocity region both diesel and DME. And mass flow rate of DME is reduced by 4.73% compared to that of diesel at maximum valve lift because cavitation region of DME is much more larger. To increase flow rate of DME injector, internal flow simulation has been conducted to investigate the nozzle hole inner R-cut effect. The flow rates of diesel and DME increase as R-cut increases, and flow coefficient of DME fuel injector was increased by 6.3% on average compared with diesel fuelled injector. Finally, optimum shape of DME injector nozzle is suggested through the comparison of flow coefficient with variation of nozzle hole inner R-cut.

Application of CE-QUAL-W2 [v3.2] to Andong Reservoir: Part I: Simulations of Hydro-thermal Dynamics, Dissolved Oxygen and Density Current

  • Bhattarai, Prasid Ram;Kim, Yoon-Hee;Heo, Woo-Myoung
    • Korean Journal of Ecology and Environment
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    • v.41 no.2
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    • pp.247-263
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    • 2008
  • A two-dimensional (2D) reservoir hydrodynamics and water quality model, CE-QUAL-W2, is employed to simulate the hydrothermal behavior and density current regime in Andong Reservoir. Observed data used for model forcing and calibration includes: surface water level, water temperature, dissolved oxygen and suspended solids concentration. The model was calibrated to the year of 2003 and verified with continuous run from 2000 till 2004. Without major adjustments, the model accurately simulated surface water levels including the events of large storm. Deep-water reservoirs, like Andong Reservoir, located in the Asian Monsoon region begin to stratify in summer and overturn in fall. This mixing pattern as well as the descending thermocline, onset and duration of stratification and timing of turnover phenomenon were well reproduced by the Andong Model. The temperature field and distinct thermocline are simulated to within $2^{\circ}C$ of observed data. The model performed well in simulating not only the dissolved oxygen profiles but also the metalimnetic dissolved minima phenomenon, a common1y occurring phenomenon in deep reservoirs of temperate regions. The Root Mean Square Error (RMSE) values of model calibration for surface water elevation, temperature and dissolved oxygen were 0.0095 m, $1.82^{\circ}C$, and $1.13\;mg\;L^{-1}$, respectively. The turbid storm runoff, during the summer monsoon, formed an intermediate layer of about 15 m thickness, moved along the metalimnion until being finally discharged from the dam. This mode of transport of density current, a common characteristic of various other large reservoirs in the Asian summer monsoon region, was well tracked by the model.

Development of Finite Element Model of Hybrid III 5th Percentile Female Dummy (Hybrid III 5% 성인 여성 더미의 유한요소 모델 개발)

  • Yi, Sang-Il;Mohan, Pradeep K.;Kan, Cing-Dao Steve;Park, Gyung-Jin
    • Transactions of the Korean Society of Automotive Engineers
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    • v.18 no.4
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    • pp.18-30
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    • 2010
  • As the automobile industry is developing, the number of deaths and injuries has increased. To reduce the damages from automobile accidents, the government of each country proposes experimental conditions for reproducing the accident and establishes the vehicle safety regulations. Automotive manufacturers are trying to make safer vehicles by satisfying the requirements. The Hybrid III crash test dummy is a standard Anthropomorphic Test Device (ATD) used for measuring the occupant's injuries in a frontal impact test. Since a real crash test using a vehicle is fairly expensive, a computer simulation using the Finite Element Method (F.E.M.) is widely used. Therefore, a detailed and robust F.E. dummy model is needed to acquire more accurate occupant injury data and behavior during the crash test. To achieve this goal, a detailed F.E. model of the Hybrid III 5th percentile female dummy is constructed by using the reverse engineering technique in this research. A modeling process is proposed to construct the F.E. model. The proposed modeling process starts from disassembling the physical dummy. Computer Aided Design (CAD) geometry data is constructed by three-dimensional (3-D) scanning of the disassembled physical dummy model. Based on the geometry data, finite elements of each part are generated. After mesh generation, each part is assembled with other parts using the joints and rigid connection elements. The developed F.E. model of dummy is simulated based on the FMVSS 572 validation regulations. The results of simulation are compared with the results of physical tests.

Analysis on correlation between bone strength by FEA, micro-CT parameters and bone mineral density (유한요소법에 의한 골강도와 micro-CT 지표 및 골밀도간의 상관관계)

  • Yoon, Young-Nam;Lee, Wan;Lee, Byung-Do
    • Imaging Science in Dentistry
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    • v.37 no.1
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    • pp.53-59
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    • 2007
  • Purpose : Bone mineral density (BMD) and bone microarchitecture are important determinants for bone strength. Recently micro-CT have provided possibilities for measuring a variety of structural indices to characterize bone microarchitecture. The objective of this study was to compare the BMD and micro-CT parameters with Young's modulus calculated by finite element analysis (FEA) for the evaluation of bone strength. Materials and Methods Bone specimens were obtained from the 18 female rabbits aged 16 weeks. Of those, 36 samples (right and left femur) were selected for 3D micro-CT analysis $(ANT^{TM},\;SKYSCAN,\;Belgium)$ and BMD by PIXlmus 2 (GE Lunar Co. USA). Five microstructural parameters of micro-CT, such as trabecular thickness (Tb.Th), bone specific surface (BS/BV), percent bone volume (BV/TV), structure model index (SMI) and degree of anisotropy (DOA) were studied. Young's modulus was obtained by software program (ANSYS 9.0, ANSYS Inc, Canonsburg, PA) based on micro-CT three dimensional images. Results : Young's modulus assessed by FEA correlated significantly with Tb.Th, BV/TV, BS/BV and SMI respectively. Young's modulus showed higher correlation with these rnicrostructural parameters of micro-CT than BMD. Microstructural parameters except DOA showed significant correlations within the examined group. Conclusion The microarchitectural parameters o( micro-CT and BMD represented some informations in the evaluation of bone strength assessed by FEA.

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A Study on Mesoscale Atmospheric Dispersion of Radioactive Particles Released from Nuclear Power Plants (원전부지 주변 국지순환에 따른 방사성 물질의 대기확산 특성 연구)

  • Lee, Gab-Bock;Lee, Myung-Chan;Song, Young-I1
    • Journal of Radiation Protection and Research
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    • v.22 no.4
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    • pp.273-288
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    • 1997
  • A three dimensional sea-land breeze model and Lagrangian particle dispersion model have been employed for the study on the mesoscale atmospheric dispersion of radioactive materials released from Wolsung NPPs. In this study, atmospheric dispersion simulations are carried out under two synoptic weather conditions : the geostrophic flow is a weak northerly wind(CASE 1) and a strong northerly wind(CASE 2) on a clear day in spring. The results show that atmospheric dispersion is affected by sea-land breeze and the recirculation of particles by the change of wind direction between sea breeze and land breeze plays an important role in atmospheric concentration distribution of radoactive materials.

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Numerical simulations of the vertical kink oscillations of the solar coronal loop with field aligned flows

  • Pandey, V.S.;Magara, T.;Lee, D.H.;Selwa, M.
    • The Bulletin of The Korean Astronomical Society
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    • v.36 no.2
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    • pp.103.1-103.1
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    • 2011
  • Recent observations by Hinode show weakly-attenuated coronal loop oscillations in the presence of background flow (Ofman & Wang 2008, A&A, 482, L9). We study the vertical kink oscillations in solar coronal loops, considering field aligned flows inside the loops as well as surrounding the loops environment. The two dimensional numerical model of straight slab is used to explore the excitation and attenuation of the impulsively triggered fast magnetosonic standing kink waves. A full set of time dependent ideal magnetohydrodynamics equations is solved numerically taking into account the value of flow of the order of observed flows detected by SOT/Hinode. We find that relaxing the assumption of the limited flows within the loops enhances the damping rate of the fundamental mode of the standing kink waves by 2 - 3 % as compared to flow pattern which is basically localized within the loops. We further notice that extending the flow pattern beyond the loop thickness also enhances the strength of the shock associated with slow magnetoacoustic waves, recognized as an addition feature detected in the numerical simulation. The wider out-flow pattern destroys the oscillation patterns early as compared to narrower flow pattern, in other words we can say that it affects the durability of the oscillation. However, for the typical coronal loops parameters we find that the observed durability periods of the SOT/Hinode observation can be achieved with an out-flow Gaussian patterns for which half-width is not greater than factor 2.0 of the loop-half-width. explain a possible relation between electric current structure and sigmoid observed in a preflare phase.

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A Study on Improvement in Digital Image Restoration by a Recursive Vector Processing (순환벡터처리에 의한 디지털 영상복원에 관한 연구)

  • 이대영;이윤현
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.8 no.3
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    • pp.105-112
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    • 1983
  • This paper discribes technique of the recursive restoration for the images degraded by linear space invariant blur and additive white Gaussian noise. The image is characterized statistically by tis mean and correlation function. An exponential autocorrelation function has been used to model neighborhood model. The vector model was used because of analytical simplicitly and capability to implement brightness correlation function. Base on the vector model, a two-dimensional discrete stochastic a 12 point neighborhood model for represeting images was developme and used the technique of moving window processing to restore blurred and noisy images without dimensionality increesing, It has been shown a 12 point neighborhood model was found to be more adequate than a 8 point pixel model to obtain optimum pixel estimated. If the image is highly correlated, it is necessary to use a large number of points in the neighborhood in order to have improvements in restoring image. It is believed that these result could be applied to a wide range of image processing problem. Because image processing thchniques normally required a 2-D linear filtering.

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The kinematics of breast displacement by the treadmill activity levels (트레드밀 운동 속도에 따른 유방의 운동학적 변화 연구)

  • Jang, Yumi;Chun, Jongsuk
    • The Research Journal of the Costume Culture
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    • v.22 no.2
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    • pp.290-299
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    • 2014
  • This research sought to analyze the characteristics of breast movement at the treadmill activity levels. It also examined the effect of wearing a sports bra in reducing breast displacement. The subjects for the data collection were females in their 20s (n=2) with C-cup size breast. The experimental conditions were three different moving speeds (4 km/h, jogging: 7 km/h, and sprinting: 10 km/h) and two types of sports bras. Three dimensional breast displacement was measured. The displacement of the right nipple point was measured with a 3D motion analyzer. The results show that the breasts were greatly displaced from the walking speed (4 km/h) when subjects did not wear any bra. Whereas their breast displacement distance decreased remarkably when they wore sports bras. The nipple point moved 42~44 mm in the vertical direction at walking speed with naked condition. But it was reduced by 80% after wearing sports bras. When subjects running (7 km/h, 10 km/h) without any bra, the nipple point moved 122~141 mm. However it was reduced by 60~70% when they wore sports bras. The apartment time (time delay) between at the highest point of the upper body and the nipple was 0.25 seconds at the running speeds (7 km/h, 10 km/h) without wearing any bra. After wearing sports bras, the time delay was cut to 0.06~0.12 seconds. These results implies that without wearing any bra the skin surrounding the breasts might be seriously pulled at running activity. The functional sports bra suppress breast movement. It might prevent the sagging of breasts by preventing the damage of the Cooper's ligaments.