• Genomics & Informatics
• /
• v.6 no.1
• /
• pp.50-53
• /
• 2008

We have released five Java Application Programming Interface (API) packages for viewing three-dimensional structures of proteins from the Protein Data Bank. To this end, the user interface of an earlier version has been refactored in an object-oriented fashion, in which refactoring is the process of changing a software system to improve its internal structure, without altering the external behavior. Various GUI design and features have been provided conveniently thanks to the Model-View-Control (MVC) model, which is an architectural pattern used in software engineering. Availability: The source code and API specification can be downloaded from https://sourceforge.net/projects/j3dpsv/.

• Ocean Systems Engineering
• /
• v.10 no.3
• /
• pp.289-316
• /
• 2020

In the present paper, the effect of the location of stern planes on the flow entering the submarine propeller is studied numerically. These planes are mounted on three longitudinal positions on the submarine stern. The results are presented considering the flow field characteristics such as non-dimensional pressure coefficient, effective drag and lift forces on the stern plane, and the wake flow formed at the rear of the submarine where the propeller is located. In the present study, the submarine is studied at fully immersed condition without considering the free surface effects. The numerical results are verified with the experimental data. It is concluded that as the number of planes installed at the end of the stern section along the submarine model increases, the average velocity, width of the wake flow and its turbulence intensity formed at the end of the submarine enhance. This leads to a reduction in the non-uniformity of the inlet flow to the propulsion system.

• 한국전산유체공학회:학술대회논문집
• /
• 2011.05a
• /
• pp.218-224
• /
• 2011

A supersonic inlet at angle of attack has anti-symmetric pressure distribution, and it can make flow instability and structural problem. In this study, numerical analysis of three-dimensional inviscid flow was conducted under various throttle ratio and angle of attack conditions. Throttle ratio was defined as the ratio of the exit area to the smallest cross section area at inlet, and the ratio is controlled from 0 to 2.42. At various angle of attack, the characteristics of steady and unsteady flow around supersonic inlet is observed under different throttling ratios. From these results, pressure recovery curves and pressure history curves were plotted by post processing. Using pressure history data, FFT analysis is also carried out. Through these processes, it shows the tendency of pressure distribution anti-symmetricity and changing dominant frequency as increasing angle of attack.

• Transactions of the Korean Society of Mechanical Engineers B
• /
• v.24 no.6
• /
• pp.802-813
• /
• 2000

This paper represents numerical computations of the interaction between the longitudinal vortex and a flat plate 3-D turbulent boundary layer. In the present study, the main interest is in the behavior of longitudinal vortices introduced in turbulent boundary layers. The flow field behind vortex generator is modeled by the information that is available from studies on the delta winglet. Also, the Reynolds-averaged Navier-Stoke equations for three-dimensional turbulent flows, together with a two-layer turbulence model to resolve the near-wall flow, is solved by the method of pseudo compressibility. The present results show that the boundary layer is thinned in the regions where the secondary flow is directed toward the wall and thickened where it is directed away from the wall, and have a good agreement with the experimental data.

• Proceedings of the KSME Conference
• /
• 2008.11a
• /
• pp.1669-1673
• /
• 2008

In this study, we simulated the atrial arrhythmia numerically. By using electro-physiological model of atrial cell from Nygren et al. and applying reaction-diffusion partial differential equation, we simulated electrical conduction in atrium. A 3-D mesh system representing the human atrium was reconstructed from the surface geometry of atrium. We used a stimulus in the form of an archetype around pulmonary vessels in the left atrium to cause the atrial arrhythmia. The septal atrial tarchycardia was developed after the stimulus.

• Proceedings of the KSME Conference
• /
• 2008.11a
• /
• pp.390-395
• /
• 2008

This study is performed to understand three dimensional characteristics of weld residual stress for the surface weld on the stainless steel plate. AISI 304 plate with one path weld on the surface was used as a test specimen. Finite element analysis was done to analyze thermal transient and residual stress due to weld. The result of finite element analysis was validated by previous paper and measurement data. Among various techniques for residual stress measurement, instrumented ball indentation method was applied. The calculated residual stresses by finite element analysis showed good agreement with the measured results.

• Journal of Korea Multimedia Society
• /
• v.9 no.1
• /
• pp.109-118
• /
• 2006

In this paper, we suggest the environment based disparity method that calculate the depth value of the objects from environment maps. This method using the disparity of the environment map can calculate the depth value from two environment map that acquire at different viewpoint. This method can decide the visibility of the object whether it is occluded others or not. Also, we can analogize the depth value of the object that does not relate the reference plane(in case of being in the air) and make three dimensional environment model using the proposed method

• Transactions of the Korean Society of Mechanical Engineers A
• /
• v.20 no.1
• /
• pp.206-213
• /
• 1996

Third order correlation funciton is to be advantageous to detect unique features embedded in various random signals that are undetectable with second order correlation or power spectrum. In this paper, we will introduce optical modulator which consists of a laser light source, 2-dimensional ultrasonic diffractor cell with signal controlling circuitry, and a CCD camera connected to personal computer for image processing. With this modulator, the third order correlaiton pattern of signal can be immediately obtained at the camera due to parallel nature of optical computing.

• Proceedings of the KIEE Conference
• /
• 1999.11b
• /
• pp.450-454
• /
• 1999

In order to evaluate the integrity of nuclear power plants, J-integral calculation is crucial. For this purpose, finite element method is popularly used to obtain J-integral. However, high cost time consuming preprocess should be performed to design the finite element model of a cracked structure. Also, the J-integral should be verified by alternative method since it may differ depending on the calculation method. The objective of this paper is to develop a three-dimensional elastic-plastic J-integral analysis system which is named as EPAS. The EPAS program consists of an automatic mesh generator for a through-wall crack and a surface crack, a solver based on ABAQUS program, and a J-integral calculation program which provides DI(Domain Integral) and EDI(Equivalent Domain Integral) based J-integral calculation. Using the EPAS program, an optimized finite element model for a cracked structure can be generated and corresponding J-integral can be obtained subsequently.

• Fisheries and Aquatic Sciences
• /
• v.10 no.3
• /
• pp.159-169
• /
• 2007

The complex 2-dimensional movements of fish during an annual migration circuit were generated and simulated by a chaotic model of fish movement, which was expanded from a small-scale movement model. Fish migration was modeled as a neural network including stimuli, central decision-making, and output responses as variables. The input stimuli included physical stimuli (temperature, salinity, turbidity, flow), biotic factors (prey, predators, life cycle) and landmarks or navigational aids (sun, moon, weather), values of which were all normalized as ratios. By varying the amplitude and period coefficients of the klinokinesis index using chaotic equations, model results (i.e., spatial orientation patterns of migration through time) were represented as fish feeding, spawning, overwintering, and sheltering. Simulations using this model generated 2-dimesional annual movements of sea bream migration in the southern and western seas of the Korean Peninsula. This model of object-oriented and large-scale fish migration produced complicated and sensitive migratory movements by varying both the klinokinesis coefficients (e.g., the amplitude and period of the physiological month) and the angular variables within chaotic equations.