• Proceedings of the Korean Environmental Sciences Society Conference
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• 2006.11a
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• pp.285-289
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• 2006

In screening of algicidal bacteria, we isolated a marine bacterium which had potent algicidal effects on harmful algal bloom (HAB) species. This organism was identified as a strain very close to Bacillus subtilisby 16S rRNA gene sequencing. This bacterium, Bacillus sp. SY-1, produces very active algicidal compounds against the harmful dinoflagellate Cochlodinium polykrikoides. We isolated three algicidal compounds (MS 1056, 1070, 1084) and identified them by amino acid analyses, fast atom bombardment mass spectrometry (FAB-MS), infrared spectroscopy (IR), $^1H$, $^{13}C$, and extensive two-dimensional nuclear magnetic resonance (2D NMR) techniques including $^1H-^{15}N$ HMBC analysis. One of them, MS 1056, contains a b-amino acid residue with an alkyl side chain of $C_{15}$. MS 1056, 1070, and 1084 showed algicidal activities against C. polykrikoides with an $LC_{50}$ (6 hrs) of 2.3, 0.8, $0.6\;{\mu}g/ml$, respectively. These compounds also showed significant algicidal activities against other harmful dinoflagellates and raphidophytes. In contrast, MS 1084 showed no significant growth inhibition against various organisms coexisting with HAB species in natural environments, including bacteria, eukaryotic microalgae, and cyanobacteria, although it inhibited growth of some fungi and yeasts. These observations imply that algicidal bacterium Bacillus sp. SY-1 and its algicidal compounds could play an important role in regulating the onset and development of HABs in the natural environments.

• The Journal of Advanced Prosthodontics
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• v.12 no.5
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• pp.299-306
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• 2020

PURPOSE. The aim of this study was to evaluate the accuracy of six recently introduced intraoral scanners (IOSs) for single crown preparations isolated from the complete arch, and to determine the effect of scanning sequence on accuracy. MATERIALS AND METHODS. A complete arch with right and left canine preparations for single crowns was used as a study model. The reference dataset was obtained by scanning the complete arch using a highly accurate industrial scanner (ATOS Core 80, GOM GmbH). Six different IOSs (Trios, iTero, Planmeca Emerald, Cerec Omnicam, Primescan, and Virtuo Vivo) were used to scan the model ten times each. The scans performed with each IOS were divided into two groups, based on whether the scanning sequence started from the right or left quadrant (n=5). The accuracy of digital impression was evaluated using three-dimensional analyzing software (Geomagic Studio 12, 3D Systems). The Kruskal Wallis and Mann- Whitney U statistical tests for trueness analysis and the One-way ANOVA test for precision analysis were performed (α=.05). RESULTS. The trueness and precision values were the lowest with the Primescan (25 and 10 ㎛), followed by Trios (40.5 and 11 ㎛), Omnicam (41.5 ㎛ and 18 ㎛), Virtuo Vivo (52 and 37 ㎛), iTero (70 and 12 ㎛) and Emerald (73.5 and 60 ㎛). Regarding trueness, iTero showed more deviation when scanning started from the right (P=.009). CONCLUSION. The accuracy of digital impressions varied depending on the IOS and scanning sequence used. Primescan had the highest accuracy, while Emerald showed the most deviation in accuracy for single crown preparations.

• Ocean Systems Engineering
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• v.6 no.4
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• pp.377-400
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• 2016

Dropped objects are among the top ten causes of fatalities and serious injuries in the oil and gas industry (DORIS, 2016). Objects may accidentally fall down from platforms or vessels during lifting or any other offshore operation. Proper planning of lifting operations requires the knowledge of the risk-free zone on the sea bed to protect underwater structures and equipment. To this end a three-dimensional (3D) theory of dynamic motion of dropped cylindrical object is expanded to also consider ocean currents. The expanded theory is integrated into the authors' Dropped Objects Simulator (DROBS). DROBS is utilized to simulate the trajectories of dropped cylinders falling through uniform currents originating from different directions (incoming angle at $0^{\circ}$, $90^{\circ}$, $180^{\circ}$, and $270^{\circ}$). It is found that trajectories and landing points of dropped cylinders are greatly influenced by the direction of current. The initial conditions after the cylinders have fallen into the water are treated as random variables. It is assumed that the corresponding parameters orientation angle, translational velocity, and rotational velocity follow normal distributions. The paper presents results of DROBS simulations for the case of a dropped cylinder with initial drop angle at $60^{\circ}$ through air-water columns without current. Then the Monte Carlo simulations are used for predicting the landing point distributions of dropped cylinders with varying drop angles under current. The resulting landing point distribution plots may be used to identify risk free zones for offshore lifting operations.

• Advances in Computational Design
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• v.5 no.2
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• pp.127-146
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• 2020

Building Information Modeling (BIM) is increasingly used throughout the facility's life cycle for various applications, such as design, construction, facility management, and maintenance. For existing buildings, the geometry of as-built BIM is often constructed using dense, three dimensional (3D) point clouds data obtained with laser scanners. Traditionally, as-built BIM systems do not contain the material and textural information of the buildings' elements. This paper presents a semi-automatic method for generation of material and texture rich as-built BIM. The method captures and integrates material and textural information of building elements into as-built BIM using thermal infrared sensing (TIS). The proposed method uses TIS to capture thermal images of the interior walls of an existing building. These images are then processed to extract the interior walls using a segmentation algorithm. The digital numbers in the resulted images are then transformed into radiance values that represent the emitted thermal infrared radiation. Machine learning techniques are then applied to build a correlation between the radiance values and the material type in each image. The radiance values were used to extract textural information from the images. The extracted textural and material information are then robustly integrated into the as-built BIM providing the data needed for the assessment of building conditions in general including energy efficiency, among others.

• Advances in concrete construction
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• v.9 no.5
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• pp.511-527
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• 2020

The main aim of the current research is to investigate the flexural behavior of the reinforced concrete (RC) slabs strengthened with strain hardening cementitious composites (SHCC) experimentally and numerically. Seven RC slabs were prepared and tested under four-points loading test. One un-strengthened slab considered as control specimen while six RC slabs were strengthened with reinforced SHCC layers. The SHCC layers had different reinforcement ratios and different thicknesses. The results showed that the proposed strengthening techniques significantly increased the ultimate failure load and the ductility index up to 25% and 22%, respectively, compared to the control RC slab. Moreover, a three dimensional (3D) finite element model was proposed to analyze the strengthened RC slabs. It was found that the results of the proposed numerical model well agreed with the experimental responses. The validated numerical model used to study many parameters of the SHCC layer such as the reinforcement ratios and the different thicknesses. In addition, steel connectors were suggested to adjoin the concrete/SHCC interface to enhance the flexural performance of the strengthened RC slabs. It was noticed that using the SHCC layer with thickness over 40 mm changed the failure mode from the concrete cover separation to the SHCC layer debonding. Also, the steel connectors prevented the debonding failure pattern and enhanced both the ultimate failure load and the ductility index. Furthermore, a theoretical equation was proposed to predict the ultimate load of the tested RC slabs. The theoretical and experimental ultimate loads are seen to be in fairly good agreement.

• BMB Reports
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• v.36 no.6
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• pp.552-557
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• 2003

Oligomers with $\alpha$-aminooxy acids are reported to form very stable turn and helix structures, and they are supposed to be useful peptidomimetics for drug design. A recent report suggested that homochiral oxa-peptides form a strong eight-member-ring structure by a hydrogen bond between adjacent aminooxy-acid residues in a $CDCl_3$ solution. In order to design an $\alpha$-MSH analog with a stable turn conformation, we synthesized four tetramers and one pentamer, based on $\alpha$-MSH sequence, and determined the solution structures of the molecules by two-dimensional NMR spectroscopy and simulated annealing calculations. The solution conformations of the three peptidomimetic molecules (TLV, TDV, and TLL) in DMSO-$d_6$ contain a stable 7-membered-ring structure that is similar to a $\gamma$-turn in normal peptides. Newly-designed tetramer TDF and pentamer PDF have a ball-type rigid structure that is induced by strong hydrogen bonds between adjacent amide protons and carbonyl oxygens. In conclusion, the aminooxy acids, easily prepared from natural or unnatural amino acids, can be employed to prepare peptidomimetic analogues with well-defined turn structures for pharmaceutical interest.

• The KSFM Journal of Fluid Machinery
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• v.11 no.1
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• pp.9-17
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• 2008

A numerical study for three-dimensional laminar flow in the entrance region of helical tubes connected with straight ones is carried out to investigate the effects of Reynolds number, pitch and curvature ratio on the oscillation periods of the flow. The fully elliptic governing equations were solved by means of a finite volume method. The fully developed laminar flow boundary condition was applied at the straight tube inlet. This results cover a curvature ratio range of 1/10${\sim}$1/320, a pitch range of 0.0${\sim}$3.2, and a Reynolds number range of 62.5${\sim}$2000. A comparison is made with previous experimental correlations and numerical data. The developments of velocity, local and average friction factors are discussed. The average friction factors are oscillatory in the entrance region of helical pipes. It has been found that the angle required for the flow to be similarly developed is most affected by the curvature ratio. The pitch and Reynolds number do not have any significant effect on the angle. The characteristic angle ${\phi}_c(={\phi}/sqrt{\delta})$, or the characteristic length to diameter ratio $s_c(=l\sqrt{\delta} cos(atan{\lambda})/d)$, can be useful to represent the development of flow in helical tubes. As the pitch increases and as the curvature ratio and Reynolds number decrease, the amplitude and the number of flow oscillations along the main streamwise direction decrease.

• Korean Journal of Applied Biomechanics
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• v.19 no.4
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• pp.663-669
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• 2009

The purpose of this study was to investigate the functional role of foot effectiveness when humans execute running turn maneuvers. Foot rotation angle at the starting turn and body angle at the vertical axis were analyzed through three-dimensional image analysis and ground reaction force analysis. Then, we created a simple equation: foot effectiveness = total foot rotation angle/total body rotation angle at the vertical axis. This equation made it possible to explain the dynamics of angular running turns. We analyzed data from running turns(0, 30, and 60) at average initial running velocities of 4.5, as well as rotations around the vertical axis during the running turns. As a result, the stance time, foot placement, and left and right force increased.

• Smart Structures and Systems
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• v.26 no.4
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• pp.435-449
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• 2020

To effectively extract the vast wind resource, offshore wind turbines are designed with large rotor and slender tower, which makes them vulnerable to external vibration sources such as wind and wave loads. Substantial research efforts have been devoted to mitigate the unwanted vibrations of offshore wind turbines to ensure their serviceability and safety in the normal working condition. However, most previous studies investigated the vibration control of wind turbines in one direction only, i.e., either the out-of-plane or in-plane direction. In reality, wind turbines inevitably vibrate in both directions when they are subjected to the external excitations. The studies on both the in-plane and out-of-plane vibration control of wind turbines are, however, scarce. In the present study, the NREL 5 MW wind turbine is taken as an example, a detailed three-dimensional (3D) Finite Element (FE) model of the wind turbine is developed in ABAQUS. To simultaneously control the in-plane and out-of-plane vibrations induced by the combined wind and wave loads, another carefully designed (i.e., tuned) spring and dashpot are added to the perpendicular direction of each Tuned Mass Damper (TMD) system that is used to control the vibrations of the tower and blades in one particular direction. With this simple modification, a bi-directional TMD system is formed and the vibrations in both the out-of-plane and in-plane directions are simultaneously suppressed. To examine the control effectiveness, the responses of the wind turbine without control, with separate TMD system and the proposed bi-directional TMD system are calculated and compared. Numerical results show that the bi-directional TMD system can simultaneously control the out-of-plane and in-plane vibrations of the wind turbine without changing too much of the conventional design of the control system. The bi-directional control system therefore could be a cost-effective solution to mitigate the bi-directional vibrations of offshore wind turbines.

• Molecular & Cellular Toxicology
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• v.4 no.4
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• pp.307-310
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• 2008

AAD16034 is an alginate lyase from Pseudoalteromonas sp. IAM14594. A very close homologue with known 3D structure exists (marine bacterium Pseudoalteromonas sp. strain no. 272). A three-dimensional structure of AAD16034 was generated based on this template (PDB code: 1J1T) by comparative modeling. The modeled enzyme exhibited a jelly-roll like structure very similar to its template structure. Both enzymes possess the characteristic alginate sequence YFKhG+Y-Q. Since AAD16034 displays enzymatic activity for poly-M alginate, docking of a tri-mannuronate into the modeled structure was performed. Two separate and adjacent binding sites were found. The ligand was accommodated inside each binding site. By considering both binding sites, a plausible binding pose for the poly-M alginate polymer could be deduced. From the modeled docking pose (i.e., the most important factor that attracts alginate polymer into this lyase) the most likely interaction was electrostatic. In accordance with a previous report, the hydroxyl group of Y345 was positioned close to the ${\alpha}$-hydrogen of ${\beta}$-mannuronate, which was suitable to initiate a ${\beta}$-elimination reaction. K347 was also very near to the carboxylatemoiety of the ligand, which might stabilize the dianion intermediate during the ${\beta}$-elimination reaction. This implies that the characteristic alginate sequence is absolutely crucial for the catalysis. These results may be exploited in the design of novel enzymes with desired properties.