• Proceedings of the Korean Society for Bioinformatics Conference
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• 2002.06a
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• pp.35-47
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• 2002

2D-PAGE/MALDI-TOF는 프로-테옴 연구의 중요한 실험 기법중의 하나이다. 이는 단백질의 발현 분석을 위한 방법으로, 2D-PAGE 결과로 얻어진 영상 데이터의 분석에 대한 정확도가 단백질 발현에 대한 분석 결과의 질을 결정하는 중요한 요인으로 작용한다. 2D Electrophoresis에 의한 Gel Protein Database는 현재 많은 연구자들에 의해 생산되고 있으며, 대단히 많은 데이터들이 인터넷을 통하여 접근이 가능하다. 이러한 대량 정보의 Database 활용이 가능한 상황은 2D-PAGE에 의해 생산된 Gel Image의 상호 비교에 대한 요구를 도출하였다. 본 발표에서는 영상처리 및 형태인식 기술과 2D-PAGE 연구의 결합을 주제로 하여, 2D-PAGE Gel 영상 처리 및 비교에 관련되는 전처리 (preprocessing), spot detection, feature extraction, spot matching 및 image comparison 기술을 소개한다.

• KSBB Journal
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• v.18 no.1
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• pp.35-38
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• 2003

Analysis of proteome in amniotic fluid was performed by 2-D PAGE (polyacrylamide gel electrophoresis). Proteins in amniotic fluid were separated by centrifugation and solubilized in buffer solution for IEF, using an IPG strip of pH 4-7L. Both a homogeneous slab gel of 12.5% and a gradient gel of 8-18%, were used. After 2-D PAGE, spots were stained with silver nitrate and picked up for in-gel digestion. Digested peptides were analyzed by MALDI-TOF and proteins were further identifical. More protein spots were detected in the gradient gels and a protein not previously reported was identified.

• Journal of IKEEE
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• v.19 no.3
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• pp.424-430
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• 2015

This paper proposes an optical cryptography application to 2-D page-oriented data based on CFB(Cipher Feedback) mode algorithm. The proposed method uses a free-space optical interconnected dual-encoding technique which performs XOR logic operations in order to implement 2-D page-oriented data encryption. The proposed method provides more enhanced cryptosystem with greater security strength than the conventional CFB block mode with 1-D encryption key due to the huge encryption key with 2-D arrayed page type. To verify the proposed method, encryption and decryption of 2-D page data and error analysis are carried out by computer simulations. The results show that the proposed CFB optical encryption system makes it possible to implement stronger cryptosystem with massive data processing and long encryption key compared to 1-D block method.

• Korean Journal of Microbiology
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• v.35 no.4
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• pp.270-276
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• 1999

Production of stress shock proteins in Burkholderia cepacia YK-2 in response to the phenoxyherbicide 2,4-dichlorophenoxyacetic acid(2,4-D) as an environmental contaminant was investrigated. The stress schock proteins were synthesized at different 2,4-D concentrations in exponentially growing cultures of B. capacia YK-2. This response involved the production of 43kDa and 41kDa GroEL proteins. The proteins were characterized by SDS-PAGE and Western blot using the anti-DnaK nad anti-GroEL monoclonal antibodies. Total stress shock proteins were analyzed by 2-D PAGE. Survival of B. cepacia YK-2 with time in the presence of different concentrations of 2,4-D was monitored, and viable counts paralleled the production of the stress shock proteins in this bacterium.

• BMB Reports
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• v.28 no.4
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• pp.359-362
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• 1995

The highly polymorphic variable number of tandem repeat (VNTR) loci in the human genome are informative markers for the genetic characterization of individuals in the paternity test and forensic science as well as for the study of human disease. In this study, VNTR loci D1S80 and D2S123 have been amplified by PCR and the amplified length polymorphic alleles were detected with a discontinuous vertical PAGE system and silver staining. For explicit DNA typing, PCR optimization, in which amplification efficiencies are similar over a wide range of allele sizes, non-specific amplifications are minimal, and new longer alleles have high amplification efficiency, has been performed by changing the PCR reaction buffer composition and thermal cycling conditions. It turned out that adding an appropriate amount of Tween 20 and NP40 to the PCR reaction buffer and raising the annealing temperature to $68^{\circ}C$ in thermal cycling made it possible for optimal VNTR loci amplification. A modified PAGE system for VNTR separation was established. Under these conditions, new longer alleles in the 01580 locus were discovered and 025123 pattern changes in colorectal tumors were observed. These technical tips are valuable for detecting various amplified fragment length polymorphisms.

• KSBB Journal
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• v.16 no.5
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• pp.435-441
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• 2001

In spite of the powerfulness for the simultaneous study of proteome expression and post-translational modification, 2-D PAGE has inevitable limitation on detect low aboundant proteins. Since many of the low abundant proteins are likely to have very important regulatiory functions in cells, separation and analysis of low copy number proteins is an important issue in proteome studies and challenge for 2-D techniques. Among various methods developed to detect low abundant proteins, electrophoretic protein prefractionation, chromatographic protein prefractionation, and subcellular fractionation are explained in this paper. Their practical strengths and weaknesses are also explained with current research trends.

• The Korean Journal of Mycology
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• v.23 no.4 s.75
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• pp.359-368
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• 1995

F. napiforme, F. beomiforme and F. nygamai could not be classified in any of the existing sections of the genus Fusarium. To discuss of the exact taxonomic relationships among these species, the cellular polypeptide patterns were compared by using 2-D PAGE. Polypeptide pattern of F. beomiforme was different from those of other two species and was more similar to F. oxysporum in section Elegans. F. nygamai and F. napiforme might be another same section which would lie between section Liseola and section Elegans. The results were consistent with the comparison of isoenzyme patterns in these species.

• The KIPS Transactions:PartD
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• v.17D no.5
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• pp.359-370
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• 2010

As web 2.0 becomes one of the important architecture styles, more web applications adopt single page structure instead of multiple web pages and navigations between pages. A single page web application client, called a mashup client in this paper, interfaces more than one services and allows users to navigate in the page. A mashup client page includes complicated functions and has to handle various styles of services and user requirements, and therefore is usually developed manually. In this paper, we propose a model driven code generation approach for in-page navigations. We propose a page model and view navigation design approach, applying REST service architecture patterns. Then, we consider type conditions for each view to have service calls or navigation controls. Also, we developed an XForms page code generation system to demonstrate the efficiency of the proposed method. The developed system generates mashup client pages including navigation controls between services and views. This system can generate ready to use codes from service specifications, so this can help to reduce the development overhead. Moreover, our approach is based on formal model and navigation patterns so the generated result code is simple and easy to understand, and includes only the necessary controls. Therefore, the proposed approach can be more effective for the case of a large number of services.

• Journal of Korean Institute of Industrial Engineers
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• v.41 no.2
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• pp.137-143
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• 2015

This thesis focuses on the 3D interface tab page type and mode of screen that affect the usability of the small screen devices such as smartphone. The experiments examined eight 3D UI designs, combinations of two modes (Portrait, Landscape) of screen, and four types (Vertical data mountain, Horizontal data mountain, Vertical carousel, Horizontal carousel). Twenty-six participants participated in the experiment. The completion time, preference and fun score were measured. The results showed that the vertical data mountain type provide the best performance in terms of the all conditions. The results of this study suggest a practical approach for the 3D UI tab page design for the small screen devices.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.43 no.2
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• pp.89-94
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• 1998

Granule bound starch synthase (GBSS), also known as the '"waxy protein'", is responsible for the synthesis of amylose in the amyloplasts of cereal crops. In hexaploid wheat (Triticum aestivum L.), GBSS is involved in amylose synthesis and rolls as an important factor to determine flour quality and end-use quality in food products. Genes on three Wx loci have been found to encode GBSS in common wheats. We developed techniques for the purification and separation of GBSS in wheat. Three major GBSS isoforms, which were encoded by the genes on three loci, Wx-A1, Wx-B1, and Wx-D1 migrating differently by one dimensional SDS-po-lyacrylamide gel electrophoresis (1D SDS-PAGE), were identified. GBSS from 66 Korean hard and soft winter wheats were purified and determined for their Wx loci and four of them were identified possessing a null allele either at the Wx-A1 and Wx-B1 loci. With help of identification of three GBSS isoforms using 1D SDS-PAGE system, we are able to identify and monitor Wx gene expressions in breeding materials for developing waxy or partial waxy wheats without experiencing consecutive selecting generations.cting generations.