• 제목/요약/키워드: 16S-rRNA

검색결과 1,903건 처리시간 0.027초

국내 양식 무지개송어(Oncorhynchus mykiss)에서 분리된 Photobacterium sp. YW2207의 특성 (Characterization of Photobacterium sp. YW2207 isolated from rainbow trout (Oncorhynchus mykiss) raised in a fresh water farm in South Korea)

  • 김현우;이은섭;이승준;김한을;한소라;오태진;김명석;김수진;권세련
    • 한국어병학회지
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    • 제36권2호
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    • pp.251-261
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    • 2023
  • Photobacterium sp. YW2207 was isolated from rainbow trout raised in a fish farm located in Yeongwol-gun, Gangwon Province, South Korea. Based on 16S rRNA sequence analysis and phylogenetic analysis, it was confirmed that Photobacterium sp. YW2207 showed 100% similarity with Photobacterium piscicola and Photobacterium phosphoreum, and 94.6% similarity with P. damselae subsp. damselae. Biochemical analysis revealed that Photobacterium sp. YW2207 is a Gram-negative, motile bacterium with a cell size of 1.5~3×3~5 ㎛. The bacteria were cultured on nutrient agar, brain heart infusion agar, Muller-Hinton agar, tryptic soy agar, and thiosulfate citrate bile sucrose agar with NaCl concentrations ranging from 0 to 2.5%. The API50CHE and API20E tests indicated lower utilization capabilities compared to the P. damselae strains provided in the API database. Furthermore, unlike most Photobacterium species, Photobacterium sp. YW2207 presented negative for catalase test. Results from the flow cytometric measurement indicated that Photobacterium sp. YW2207 exhibited a more diverse distribution of cell sizes and had larger cell sizes compared with P. damselae subsp. damselae. Minimum inhibitory concentration tests showed that Photobacterium sp. YW2207 had low susceptibility to β-Lactam and aminoglycoside antibiotics, while having high susceptibility to tetracycline, doxycycline, and quinolone antibiotics. Pathogenicity on rainbow trout revealed that an immersion of 1×105 CFU/ml did not cause mortality or clinical symptoms.

국내 봉화 송이 자생지 내 균환 유래 토양세균의 송이균사체 생장촉진 효과 (Growth promoting effect on Tricholoma matsutake mycelium by bacteria from fairy Ring in Bonghwa-gun, Korea)

  • 최두호;이은지;이강효;안기홍
    • 한국버섯학회지
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    • 제22권1호
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    • pp.27-30
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    • 2024
  • 본 연구실에서는 송이의 인공재배 조건 확립을 목표로 세균을 활용한 생장촉진 유도실험을 진행하였으며, 봉화에서 확보한 7 점의 세균에 의한 송이 균사체의 생장촉진 결과를 확인하였다. 생장촉진 효과가 가장 높았던 3 점의 세균 B22_7_B06, B22_7_B07, B22_7_B08은 Paenibacillus 속으로 확인되었다. 그러나 이러한 배양된 송이 균사체의 생장면적 측정 이외에 다양한 방식을 통한 균사체 생장결과 확인 기준이 필요한 실정이며, 이에 향후 확보된 세균들이 모두 그람 양성균인 것에 착안하여 각 세균들로부터 대사산물을 추출한 후 (Eltokhy et al., 2021), 추출한 대사산물을 활용하여 송이 균사체의 세포외 효소활성 변화 정도를 측정하여 보다 체계적인 송이 균사체 생장촉진 데이터를 확보하고자 한다. 더불어 미생물에 의한 송이 균사체 생장촉진 사례 데이터를 지속적으로 축적하여 송이 종류에 따른 미생물의 생장촉진 효과의 다양성을 확보하고 확보된 촉진균으로 부터 추출한 물질이 함유된 영양 배지를 활용하여 송이 인공재배를 위한 생태모방에 기여하고자 한다.

국내 양양 송이 자생지 내 균환 유래 토양미생물과 송이균사체 생장촉진 효과 (Growth-promoting effect of microorganisms from a fairy ring in Yangyang, Korea on Tricholoma matsutake mycelium)

  • 최두호;이은지;이강효;안기홍
    • 한국버섯학회지
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    • 제22권1호
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    • pp.22-26
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    • 2024
  • 본 실험은 송이버섯의 인공재배에 있어 기주식물에 대한 의존성을 줄이기 위한 일환으로 송이 균환의 토양 미생물을 활용하여 진행되었다. 이를 위해 송이 자실체가 발달하는 9월을 대상으로 송이 자생지 내 균환으로부터 토양 내 균주들을 분리하였으며, 1점의 세균과 2점의 진균을 대상으로 대조구 대비 생장한 송이 균사체의 크기 퍼센트를 이용한 생장 촉진 결과를 확인하였다. 또한 확보된 균주들에 대한 동정을 위해 NCBI blast 과정과 phylogenetic tree 제작 과정을 거쳤다. 다만 본 실험에서 확보한 미생물과 동일한 동정명의 균을 이용한 동일 조건의 실험 결과와 비교하였을 때, 본 실험에서 확보한 미생물에 의한 송이 균사에 대한 생장촉진 정도가 다소 낮게 나타남을 확인하였다. 그러나 실제 자연계에서 송이와 같은 외근균성 버섯과 작용하는 미생물의 사례가 매우 다양하기 때문에 송이에 대해 균사 생장을 촉진시키는 미생물 데이터베이스 축적에 있어 그 의의가 있다고 볼 수 있다. 또한 축적된 미생물 데이터베이스를 토대로 송이 균사의 생장촉진 나아가 송이 자실체의 발달촉진에 공통적으로 작용하는 미생물 유래 분비물질 고찰에 있어서도 본 실험의 결과가 기여하는 바가 크다고 볼 수 있다. 이에 더해 미생물 군집 내 촉진균 우점도 및 송이 발생지와 미발생지 사이에 있는 미생물 우점도 차이에 대한 추가적인 분석을 통해 향후 송이 발생에 활용할 수 있는 생태모방에 활용할 가능성 또한 존재한다. 추후 지속적인 연구를 통해 균환 유래 토양 미생물에 의한 송이 작용에 대한 실험이 계속 진행되어야 할 필요가 있다.

실내 클라이밍 짐 홀드의 관리방법에 따른 미생물 오염에 관한 연구 (A Study on Microbial Contamination according to Effective Management Strategies of Indoor Climbing Gym Holds)

  • 김지인;신혜진;정유정;서해송;오기택;박용후;김성균
    • 한국환경보건학회지
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    • 제50권2호
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    • pp.102-112
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    • 2024
  • Background: Despite the rise in the number of domestic indoor climbing gyms, there is a lack of specific hygiene standards and research on the holds installed in them. Holds can act as vectors for microbial transmission through the hands, posing a risk of infectious diseases, especially with damaged skin. Objectives: The aim of this study is to investigate the contamination level and species of microorganisms on holds according to the management methods practiced in indoor climbing gyms and identify effective strategies for reducing microbial contamination. Methods: We investigated factors that may influence microbial contamination of holds, including hold management methods, user information, and hygiene management at three climbing gyms in Seoul. A total of 72 holds were sampled, 18 for each management method of brushing, high-pressure washing, and ethanol disinfection. Samples were cultured on LB and blood agar at 37℃ for 48 hours to calculate CFUs. PCR assay targeting 16S rRNA was carried out to identify microorganisms. Dunn-Bonferroni was employed to see the microbial reduction effect of the management method and the difference in microbial contamination by management method and climbing gym. Results: As a result of microbial identification, microorganisms such as Bacillus, Staphylococcus, and Micrococcus, which were derived from various environments such as skin and soil, were discovered on the surface of the climbing hold. Among the discovered microorganisms, some species had potential pathogenic properties that could cause food poisoning, gastrointestinal disease, bacteremia, and sepsis. All hold management methods were effective in reducing microorganisms (p<0.05), with ethanol disinfection being the most effective (p<0.001). Conclusions: Our results indicate that there are potential pathogens on holds that demand thorough management for microbial prevention. Proposed methods include regular brushing and ethanol disinfection in addition to high-pressure washing with long cycles, which are the existing forms of hold management. Further studies on shoe management are advised to curb soil-derived microorganisms.

Amelioration of colitis progression by ginseng-derived exosome-like nanoparticles through suppression of inflammatory cytokines

  • Jisu Kim;Shuya Zhang ;Ying Zhu;Ruirui Wang;Jianxin Wang
    • Journal of Ginseng Research
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    • 제47권5호
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    • pp.627-637
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    • 2023
  • Background: Damage to the healthy intestinal epithelial layer and regulation of the intestinal immune system, closely interrelated, are considered pivotal parts of the curative treatment for inflammatory bowel disease (IBD). Plant-based diets and phytochemicals can support the immune microenvironment in the intestinal epithelial barrier for a balanced immune system by improving the intestinal microecological balance and may have therapeutic potential in colitis. However, there have been only a few reports on the therapeutic potential of plant-derived exosome-like nanoparticles (PENs) and the underlying mechanism in colitis. This study aimed to assess the therapeutic effect of PENs from Panax ginseng, ginseng-derived exosome-like nanoparticles (GENs), in a mouse model of IBD, with a focus on the intestinal immune microenvironment. Method: To evaluate the anti-inflammatory effect of GENs on acute colitis, we treated GENs in Caco2 and lipopolysaccharide (LPS) -induced RAW 264.7 macrophages and analyzed the gene expression of proinflammatory cytokines and anti-inflammatory cytokines such as TNF-α, IL-6, and IL-10 by real-time PCR (RT-PCR). Furthermore, we further examined bacterial DNA from feces and determined the alteration of gut microbiota composition in DSS-induced colitis mice after administration of GENs through 16S rRNA gene sequencing analysis. Result: GENs with low toxicity showed a long-lasting intestinal retention effect for 48 h, which could lead to effective suppression of pro-inflammatory cytokines such as TNF-α and IL-6 production through inhibition of NF-κB in DSS-induced colitis. As a result, it showed longer colon length and suppressed thickening of the colon wall in the mice treated with GENs. Due to the amelioration of the progression of DSS-induced colitis with GENs treatment, the prolonged survival rate was observed for 17 days compared to 9 days in the PBS-treated group. In the gut microbiota analysis, the ratio of Firmicutes/Bacteroidota was decreased, which means GENs have therapeutic effectiveness against IBD. Ingesting GENs would be expected to slow colitis progression, strengthen the gut microbiota, and maintain gut homeostasis by preventing bacterial dysbiosis. Conclusion: GENs have a therapeutic effect on colitis through modulation of the intestinal microbiota and immune microenvironment. GENs not only ameliorate the inflammation in the damaged intestine by downregulating pro-inflammatory cytokines but also help balance the microbiota on the intestinal barrier and thereby improve the digestive system.

Positive effects of grazing on blood components and intestinal microbiota in growing horses

  • Ji Hyun Yoo;Jong An Lee;Jae Young Choi;Sang Min Shin;Moon Cheol Shin;Hyeon Ah Kim;Yong Jun Kang;Hee Chung Ji;In Cheol Cho;Byoung Chul Yang
    • 농업과학연구
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    • 제49권4호
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    • pp.963-971
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    • 2022
  • Production of high-quality horses is important to make the horse industry grow. Grazing during the growing period can be an important factor affecting the production of high-quality horses. The objective of this study was to determine the effects of grazing on growing horses by analyzing their blood components and intestinal microbiota. Twelve growing horses for evaluating blood components and ten growing horses for evaluating intestinal microbiota were raised for about seven months and separated by two treatments: grazing vs. stable. Complete blood count, blood chemistry, and creatine kinase levels were analyzed as blood components and a 16s rRNA gene sequence analysis was performed to analyze intestinal microbiota. Calcium ions tended to be lower in the group with grazing treatment. Alkaline phosphatase and creatine kinase tended to be higher in the group with grazing treatment. These results indicate that grazing can provide horses with more exercise than staying in stables. At the phylum level, Firmicutes/Bacteroidetes ratios in grazing and stable groups were 4.2 and 6.5, respectively. Because various studies have reported that a. high Firmicutes/Bacteroidetes ratio indicates obesity, the method of raising horses might affect their physical ability. At the species level, rates of Clostridium butyricum in grazing and stable groups were 3.2% and 13.1%, respectively. Some strains of C. butyricum can cause several diseases such as botulism. These results indicate that grazing can positively affect growing horses in terms of blood components and intestinal microbiota. Moreover, grazing can be helpful to make growing horses healthy through proper exercise.

전통 발효 식품에서 분리한 유산균을 이용한 yogurt 발효특성 (Fermentative characteristics of yogurt using lactic acid bacteria isolated from Korean traditional fermented food)

  • 박나영;이신호
    • 한국식품저장유통학회지
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    • 제24권5호
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    • pp.707-713
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    • 2017
  • 전통식품에서 요구르트 제조 가능한 유산균을 선발하기 위하여 김치, 식혜 막걸리에서 분리한 유산균 50균주 중 커드 형성 능력이 있는 16균주를 선발, L. monocytogenes, S. aureus, B. cereus, E. coli, S. entritidis, V. vulnificus에 대한 항균활성과 인공 위액과 담즙액에 대한 내성이 우수한 4 균주를 선발하였다. 4균주의 환원탈지유에서 배양특성비교. 항균활성과 인공 위액과 담즙에서의 내성 등을 고려하여 KM24(구균)와 KM32(간균)을 최종 선발하여 동정한 결과 각각 Pediococcus pentosaceus, Lactobacillus plantarum로 동정되었다. 요구르트 제조 중 유산균수는 KM24와 KM32균주 혼합 접종구가 가장 높았으며, 배양 48시간째 9.66 log CFU/mL을 나타내었다. pH는 배양 48시간째 각각 4.25(혼합 접종구), 3.77(대조구)을 나타내었다. 산도의 변화는 pH 변화와 유사하여, 배양 72 시간 후 KM32 단독 접종구를 제외하고 0.88-1.24%의 범위를 나타내었다. 혼합 접종구와 대조구의 총 폴리페놀함량은 각각 38.45와 $38.86{\mu}g/mL$이었다. DPPH 라디칼 소거능은 KM24 접종구가 가장 높은 52.54%로, 혼합 접종구(48.57%)와 대조구(48.22%)에 비해 항산화활성이 우수하였다. 혼합 접종구의 경우 $4^{\circ}C$에서 10일간 저장 중 가장 높은 유산균수를 유지하였으며, 저장 10일째 9.28 log CFU/mL이었다. pH는 KM32 접종구를 제외하고 저장기간 동안 저장 초기와 유사하였으며, 산도는 저장 5일까지는 다소 증가하다가 그 이후 감소하였다. 혼합 접종구는 대조구에 비해 유산균수는 높았으나 pH는 높고, 산도는 낮은 경향을 나타내었다. 이상의 결과를 미루어 보아 분리균주인 KM24와 KM32은 요구르트 제조 시 복합 starter로 사용이 가능할 것으로 판단되었다.

양식 바지락, Ruditapes philippinarum에 대한 Vibrio tapetis의 병원성과 PCR법에 의한 진단 (Pathogenicity and PCR detection of Vibrio tapetis in Manila clams, Ruditapes philippinarum)

  • 박성우;이경희
    • 한국어병학회지
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    • 제18권1호
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    • pp.39-48
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    • 2005
  • 'Brown ring disease (BRD)'의 원인균인 Vibrio tapetis (NCIMB 13622)의 바지락(Ruditapes philippinarum)에서의 병원성을 조사하고, 바지락 조직 내의 균의 존재를 PCR법으로 진단하였다. 실온에 12시간 노출시킨 바지락 개체당 1.0$\time$$10^7 cells과 1.0$\time$$10^4 cells의 V. tapetis를 멸균주사기를 사용하여 인위감염 시켰을 때의 누적폐사율은 각각 67.5%와 7.5%로 나타났다. 폐사개체에서 BRD의 특징적인 증상인 패각내면의 chonchiolin 침착에 의해 형성되는 갈색반점은 관찰되지 않았으나, PCR법에 의해 균의 존재를 확인할 수 있었다.10종의 Vibrio균을 대상으로 PCR법의 검출 특이성을 조사한 결과 V. tapetis에 대해서만 414 bp의 특이밴드가 검출되었다. 또 V. tapetis를 개체당 1.0$\time$$10^4 cells과 1.0$\time$$10^8 cells 접종시킨 다음 사육하면서 경시적으로 균의 동태를 조사한 결과 개체당 1.0$\time$$10^4 cells을 접종하였을 때는 1일 후에는 아가미에서만 특이밴드가 검출되었고, 3일 후에는 모든 조직에서 검출되지 않았다. 한편 개체당 1.0$\time$$10^8 cells을 접종하였을 때 1일 후에는 아가미와 소화관, 3일 후에는 모든 조직에서 검출되었으며, 5일과 7일 후에는 외투막과 발, 9일 후에는 아가미와 발에서 검출되어, 검출장기로는 아가미가 가장 효과적인 것으로 판명되었다. PCR법으로 태안과 고창 지역의 바지락, 동죽, 굴 및 피뿔고둥의 조직내 V. tapetis의 존재를 검사한 결과 바지락과 피뿔고둥에서는 전혀 검출되지 않은 반면 굴과 동죽에서 각각 23.1%, 와 9.4% 검출되어 바지락 이외의 다른 패류의 진단에도 유용한 방법으로 판단되었다.

Melanogenesis regulatory constituents from Premna serratifolia wood collected in Myanmar

  • WOO, SO-YEUN
    • 한국자원식물학회:학술대회논문집
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    • 한국자원식물학회 2019년도 춘계학술대회
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    • pp.21-22
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    • 2019
  • Melanin is a mixture of pigmented biopolymers synthesized by epidermal melanocytes that determine the skin, eye, and hair colors. Melanocytes produce two different kinds of melanin, eumelanin (dark brown/black insoluble pigments found in dark skin and dark hair and pheomelanin (lighter red/yellow). The biological role of melanin is to prevent skin damage by ultraviolet (UV) radiation. However, the overproduction or deficiency of melanin synthesis could lead to serious dermatological problems, which include melasma, melanoderma, lentigo, and vitiligo. Therefore, regulating melanin production is important to prevent the pigmentation disorders. Myanmar has a rich in natural resources. However, the chemical constituents of these natural resources in Myanmar have not been fully investigated. In the effort to search for compounds with anti-melanin deposition activity from Myanmar natural resources, five plants were collected in Myanmar. Extracts of these collected five plants were tested for anti-melanin deposition activity against a mouse melanoma cell line (B16-F10) induced with ${\alpha}$-melanocyte-stimulating hormone (${\alpha}$-MSH) and 3-isobutyl-1-methylxanthine (IBMX), and their anti-melanin deposition activities were compared with the positive control, arbutin. Among the tested extracts, the CHCl3 extracts of the Premna serratifolia (syn: P. integrifolia) wood showed anti-melanin deposition activities with IC50 values of $81.3{\mu}g/mL$. Hence, this study aims to identify secondary metabolites with anti-melanin deposition activity from P. serratifolia wood of Myanmar. P. serratifolia belongs to the Verbenaceae family and is widely distributed in near western sea coast from South Asia to South East Asia, which include India, Malaysia, Vietnam, Cambodia, and Sri Lanka. People in Tanintharyi region located in the southern part of Myanmar utilize the P. serratifolia, Sperethusa crenulata, Naringi crenulata, and Limonia acidissima as Thanaka, traditional cosmetics in Myanmar. Thanaka is applied in the form of paste onto skins to make it smooth and clear, as well as to prevent wrinkles, skin aging, excessive facial oil, pimples, blackheads, and whiteheads. However, the chemical constituents responsible for their cosmetic properties are yet to be identified. Moreover, the chemical constituents of P. serratifolia was almost uncharacterized. Investigation of the P. serratifolia chemical constituents is thus an attractive endeavor to discover new anti-melanin deposition active compounds. The investigation of the chemical constituents of the active CHCl3 extract of P. serratifolia led to isolation of four new lignoids, premnan A (1), premnan B (2), taungtangyiol C (3), and 7,9-dihydroxydolichanthin B (4), together with premnan C (5) (assumed to be an artifact), one natural newlignoid,(3R,4S)-4-(1,3-benzodioxol-5-ylcarbonyl)-3-[(R)-1-(1,3-benzo dioxol-5-yl)-1-hydroxy methyl]tetrahydro-2-furanone (6), and five known compounds (7-11)1,2). The structures of all isolated compounds were determined on the basis of their spectroscopic data and by comparison with the reported literatures. The absolute configurations of 1-3 and 5 were also determined by optical rotation and circular dichroism (CD) data analyses1). The anti-melanin deposition activities of all the isolated compounds were evaluated against B16-F10 cell line. 7,9-Dihydroxydolichanthin B (4) and ($2{\alpha},3{\alpha}$)-olean-12-en-28-oic acid (11) showed strong anti-melanin deposition activities with IC50 values of 18.4 and $11.2{\mu}M$, respectively, without cytotoxicity2). On the other hand, compounds 1-3, 5, and 7 showed melanogenesis enhancing activities1). To better understand their anti-melanin deposition mechanism, the effects of 4 and 11 on tyrosinase activities were investigated. The assay indicated that compounds 4 and 11 did not inhibit tyrosinase. Furthermore, we also examined the mRNA expression of microphthalmia-associated transcription factor (MITF), tyrosinase (TYR), tyrosinase-related protein-1 (TRP-1), and tyrosinase-related protein-2 (TRP-2). Compounds 4 and 11 down-regulated the expression of Tyr and Mitf mRNAs, respectively. Although the P. serratifolia wood has been used as traditional cosmetics in Myanmar for centuries, there are no scientific evidences to support its effectiveness as cosmetics. Investigation of the anti-melanin deposition activity of the chemical constituents of P. serratifolia thus provided insight into the effectiveness of the P. serratifolia wood as a cosmetic agent.

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Bacillus coagulans NRR1207이 생산하는 α-galactosidase에 의한 대두박 비소화성분의 가수분해 (Hydrolysis of Non-digestible Components of Soybean Meal by α-Galactosidase from Bacillus coagulans NRR1207)

  • 라석한;렌친핸드;박민길;김완섭;백승희;남명수
    • 생명과학회지
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    • 제28권11호
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    • pp.1347-1353
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    • 2018
  • 본 연구는 한국전통약용식물(구기자, 오미자 잎)의 발효물로부터 분리한 Bacillus coagulanse NRR1207의 발효 특성을 파악하고 Bacillus coagulans NRR1207의 ${\alpha}$-galactosidase의 활성과 이를 통한 대두박의 비소화성분의 분해를 확인하였다. Bacillus coagulans NRR1207이 생산하는 효소 중 ${\alpha}$-galactosidase, ${\beta}$-galactosidase, ${\alpha}$-glucosidase가 가장 높은 40 nmol 이상의 활성을 나타내었다. Bacillus coagulans NRR1207의 발효 특성은 10% skim milk에서 배양했을 때, pH는 급속히 감소했고 적정 산도는 1.9%까지 증가했고 생균수도 발효 24시간에 8.8 log CFU/ml로 증가했다. 유당은 배양 72시간째 완전히 고갈되었고 유산 생산 능력도 탁월했다. Bacillus coagulans NRR1207을 대두박에 접종 후 배양시간에 따른 생균수의 변화는 배양 시작 시 7.6 log CFU/ml, 배양 16시간에 최고에 도달하여 9.0 log CFU/ml이었고 배양 72시간에 8.3 log CFU/ml로 Bacillus coagulans NRR1207이 왕성하게 잘 성장하였다. 대두박의 비소화성분 분해는 Bacillus coagulans NRR1207 접종 후 발효 24, 48, 72시간이 경과하면서 이 균이 생산한 ${\alpha}$-galactosidase에 의해 비소화성분인 stachyose와 raffinose가 대부분 분해되고 galactose가 생성되었다. 따라서 Bacillus coagulans NRR1207은 대두박의 비소화성분을 분해하는 생균제(Probiotics)로써 이용하여 식품 및 가축 사료 이용성 증대에 활용이 가능할 것으로 사료된다.