• Fisheries and Aquatic Sciences
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• 제16권2호
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• pp.109-116
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• 2013

Eighteen specimens of juvenile Mugilidae were collected in October 2012 from the southern coastal waters of Jeju Island, and identified based on analysis of their mitochondrial DNA16S rRNA sequences. Seventeen specimens of Oedalechilus labiosus and a single specimen of Ellochelon vaigiensis were found, constituting a new record for these species among Korean ichthyofauna. O. labiosus is identified by the angle at the posterior end of its mouth, which contains a round notch, a darkish dorsal margin of the pectoral fin, the presence of 33-36 lateral line scales, and 23-24 vertebrae. E. vaigiensis is identified by dark dorsal and pectoral fins, the presence of 26 lateral line scales, and 25 vertebrae. The proposed Korean name for Oedalechilus is 'Sol-ip-sung-eo-sok' and that for Ellochelon is 'Nup-jeok-ggo-ri-sung-eo-sok'. The proposed Korean names for the species are 'Sol-ip-sung-eo' and 'Nup-jeok-ggo-ri-sung-eo' for O. labiosus and E. vaigiensis, respectively. We present a key for identification of the Mugilidae family of species from Korea, and include these two newly recorded species.

• The Plant Pathology Journal
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• 제20권4호
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• pp.283-288
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• 2004

Four Erwinia carotovora strains isolated from potatoes showing blackleg symptoms and rotted Chinese cabbage were analysed by biochemical tests and sequence analysis of 16S rDNA and 16S-23S rRNA intergenic spacer (IGS) regions, and the data were compared to related E. carotovora strains. Based on the results of the biochemical tests and sequence analysis, 2 of the 4 strains were identified as E. carotovora subsp. carotovora (Ecc), whereas the rest strains were distinct from Ecc. The last two strains, HCC3 and JEJU, were biochemically similar to E, carotovora subsp. atroseptica (Eca). However, the results of sequence analysis and Eca-specific PCR assays showed that the strains were distinct from Eca. On the basis of 16S rDNA sequence analysis, HCC3 and JEJU strains were placed in E. carotovora subsp. odorifera and E. carotovora subsp. wasabiae, respectively. The results of sequence analysis and specific PCR assay for Eca indicated that Asian Eca strains were distinct from European Eca strains, although they were phenotycally homogeneous.

• Journal of Microbiology and Biotechnology
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• 제16권12호
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• pp.1862-1867
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• 2006

A moderately halophilic, Gram-positive, spore-forming bacterium was isolated from the roots of Blutaparon portulacoides, a plant found in sandy soil parallel to the beach line in Restinga de Jurubatiba, Rio de Janeiro, Brazil. The strain, designated $M9^T$, was motile and strictly aerobic with rod-shaped cells. It grew in the absence of NaCl and up to 20% NaCl, and was able to hydrolyze casein and starch. Strain $M9^T$ had a cell-wall peptidoglycan based on L-Orn-D-Asp, the predominant menaquinone present was menaquinone-7 (MK-7), diaminopimelic acid was not found, and anteiso-$C_{15:0}$ and iso-$C_{15:0}$ were the major fatty acids. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain $M9^T$ belonged to the genus Halobacillus and exhibited 16S rRNA gene similarity levels of 97.8-99.4% with the type strains of the other nine Halobacillus species. The DNA-DNA relatedness of strain $M9^T$ with H. trueperi, the closest relative as regards 16S rRNA gene similarity, and H. locisalis was 21% and 18%, respectively. Therefore, on the basis of phenotypic, genotypic, and phylogenetic data, strain $M9^T$ (=ATCC BAA-$1217^T$, =CIP $108771^T$, =KCTC $3980^T$) should be placed in the genus Halobacillus as a member of a novel species, for which the name Halobacillus blutaparonensis sp. nov. is proposed.

• Journal of Species Research
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• 제7권2호
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• pp.135-150
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• 2018

Eleven bacterial strains 17SD2_15, 17Sr1_23, 17SD2_13, 17Sr1_31, 17gy_18, 16B15D, 16B02D, 16B04G, 16B01D, 17U4-2 and 17J28-10 assigned to the phylum Proteobacteria were isolated from soil samples collected from Seoul Women's University, in South Korea. The Belnapia species, strain 17SD2_15 was cocci-shaped and pink-colored. The Methylobacterium species, strain 17Sr1_23, 17SD2_13, 17Sr1_31, and 16B15D were short rod-shaped and pink-colored. The Microvirga species, strain 17gy_18, and 16B02D were short rod-shaped and pink-colored. The Oxalicibacterium species, strain 16B04G was short rod-shaped and pink-colored. The Sphingomonas species, strain 16B01D was short rod-shaped and yellow-colored. The Variovorax species, strain 17U4-2 was cocci-shaped and yellow-colored. The Paracoccus species, 17J28-10 was cocci-shaped and orange-colored. Phylogenetic analysis based on 16S rRNA gene sequence showed that strains 17SD2_15, 17Sr1_23, 17SD2_13, 17Sr1_31, 17gy_18, 16B15D, 16B02D, 16B04G, 16B01D, 17U4-2 and 17J28-10 were most closely related to Belnapia soli (with 99.9% similarity), Methylobacterium gregans (99.1%), Methylobacterium isbiliense (99.6%), Methylobacterium oxalidis (99.9%), Microvirga aerilata (98.7%), Methylobacterium aerolatum (99.0%), Microvirga vignae (100.0%), Noviherbaspirillum canariense (100.0%), Sphingomonas desiccabilis (100.0%), Variovorax humicola (99.6%), and Paracoccus acridae (99.1%), respectively. This is the first report of these eleven species in Korea.

• 미생물학회지
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• 제33권4호
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• pp.257-261
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• 1997

겨울철 소양호에서 세균 군집 구조를 파악하고자 총세균수와 EUB338, ALF1b, BET4a, GAM42a와 CF probe 등 fluorescent rRNA targeted oligonucleotide probe 와 반응하는 세균 개체수를 수심별로 측정하였다. 총세균수는 $0.7{\times}10^6{\sim}1.1{\times}10^6cell{\cdot}ml^{-1}$이였으며, 5 m와 10 m 수층에서 높게 나타났다. 총세균수에 대한 Eubacteria의 비율은 34~90%이였으며, 5 m와 10 m에서 낮게 나타났다. Proteobacteria ${\alpha}$-group은 Eubacteria의 10.8-28.7%, ${\beta}$-group은 4.5-53.5%, ${\gamma}$-group은 4.9-35.5%, 그리고 Cytophaga-Flavobacterium group은 6.1-21.1%이였다. 0-5 m 수심에서는 ${\beta}$-group이 28.6-53.5%로 우점하고 있었으며, 10 m에서는 ${\gamma}$-group이 35.5%로 우점하였다. 30, 50 m 수심에서는 ${\alpha}$-group과 Cytophaga-Flavobacterium group이 우점하였다. 세균 군집 구조로 보면 0-2 m, 5-10 m 그리고 30-50 m의 3개층은 각각 독특한 특징을 나타내었다. 이 방법으로 호수 생태계에 대한 새로운 정보를 얻을 수 있었다.

• 미생물학회지
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• 제47권3호
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• pp.218-224
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• 2011

케피어그레인을 이용하여 제조한 요쿠르트로부터 젖산균 OA18을 분리하여 그 특성을 조사하였다. 분리된 균주는 그람양성, 구균이었으며, 혐기적 조건에서 이산화탄소를 생성하였다. 균주는 MRS 배지에서 $30-37^{\circ}C$ 온도 범위와 pH 7.0-9.0범위에서 잘 자랐으며, 성장을 위한 최적 온도와 pH는 각각 $37^{\circ}C$와 pH 7.0이었다. 분리된 젖산균은 리보오스, D-글루코오스, cellobiose, D-trehalose 등을 분해하여 산을 생성하였고, L-xylose, D-melibiose, inositol은 분해하지 못하였다. 16S rRNA gene 염기서열 분석을 통해 OA18 균주는 유전자은행(NCBI)에 등재되어 있는 Enterococcus faecalis (AB012212)의 염기서열과 99.8% 동질성이 있음을 확인하였다. 이와 같은 생화학적 특성과 염기서열 분석 결과를 토대로 분리된 균주를 Enterococcus faecalis OA18로 명명하였다. E. faecalis OA18균주는 오르니틴 생성능력과 Streptomyces coelicolor subsp. Flavus, S. coeruleorubidus, S. coeruleoaurantiacus, S. coelicolor, S. coeruleoprunus 대한 항균 활성을 보유하고 있었으며, 0-7% NaCl을 함유하는 MRS 배지에서 증식이 가능한 것으로 조사되었다.

• 한국응용과학기술학회지
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• 제39권6호
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• pp.831-838
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• 2022

농업 재배지 토양으로부터 auxin 생성세균 KSD16, KSD33 그리고 KSD36를 분리하였다. 분리균주 KSD16, KSD33 그리고 KSD36 는 16S rRNA 유전자 계통분석을 통해 Arthrobacter 속으로 분류되었다. 이들 균주는 R2A배지에 0.1% L-tryptophan를 첨가한 배지에서 28℃, 48 시간 배양한 결과, auxin의 일종인 indole-3-acetic acid (IAA)를 204.4 mg L^-1 생성하는 것으로 확인되었다. IAA 생성세균의 녹두종자 발아에 미치는 영향을 확인한 결과, Arthrobacter 속 균주 KSD16, KSD33 그리고 KSD36 는 대조군에 비해 뿌리길이와 발근수가 증가하였다. Arthrobacter 속 균주의 녹두 성장촉진 효과를 확인한 결과, 녹두의 발아율이 대조군보다 73.4 % 증가하는 특징을 나타내었다.

• Fisheries and Aquatic Sciences
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• 제3권1호
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• pp.64-70
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• 2000

DNA probes for the l6S rRNA have been designed for the detection of Edwardsiella tarda. In order to accomplish this purpose, the l6S rRNA gene from E. tarda has been cloned and sequenced. Two highly feasible oligonucleotide probe sites have been determined by the database analysis programs presented by PCGENE and BLAST. These two probes have been evaluated by slot blot hybridization analysis. Hetero- and homo-trimeric templates have been synthesized using these two probe sites. The templates have been further multimerized by PCR to generate between 150 and 300 bp long DIG-11-dUTP labeled probes. Unlike 3' end labeled oligonucleotide probes or templates, multimerized probes showed no cross­hybridization in the given experimental condition. Furthermore, a significant increase in sensitivity has been observed with these probes. This method, we presented here, may be useful for the designing of probes for the detection of other fish pathogenic microorganisms also.

• 한국버섯학회지
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• 제8권4호
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• pp.157-160
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• 2010

신령버섯은 항암작용과 더불어 면역강화작용 등 약용으로서 이용되고 있습니다. 최근에는 신령버섯 재배농가에서 새로운 병징 현상이 보고되어 내생세균에 대한 분자생물학적 방법으로 조사하였다. 병징을 나타내는 수집된 기형버섯을 eubacterial 16S rDNA 영역을 이용하여 PCR한 결과 기형버섯만 증폭되었다. 이 영역을 부분적으로 염기서열을 결정한 결과 CFB bacterium과 유사성이 가장 높았고, 이 염기서열을 이용하여 프라이머를 디자인한 후 nested PCR를 부위별로 확인한 결과 기형을 일으킨 갓의 주름살 부위에서 가장 강하게 증폭되었고 포자수확도 되지 않았으며 배양불능세균 group인 CFB bacterium임을 확인하였다.

• 한국식품저장유통학회지
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• 제17권2호
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• pp.301-306
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• 2010

본 연구에서는 계육 창상부위의 원인이 되는 세균을 동정하였다. 계육의 등과 다리 창상 부위로부터 무작위 선별법을 통해 총 10주의 균주를 분리하였다. 순수 분리 배양된 균주의 세포막 지방산 조성 분석 결과, 5 균주가 높은 유효성을 지녔으며, Shigella sonnei, Proteus mirabilis, Escherichia coli로 동정되었다. 또한 16S rRNA sequence를 실시한 결과, 동정된 균주는 Shigella sonnei(99%), Proteus mirabilis(99%) 그리고 Escherichia coli(99%)와 높은 염기서열 상동성을 나타냈다. 따라서 본 연구에서 조사된 계육의 등과 다리 부위 주요 창상 원인균은 Shigella sonnei, Proteus mirabilis, Escherichia coli인 것으로 밝혀졌다.