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A Case Study of Drug Repositioning Simulation based on Distributed Supercomputing Technology (분산 슈퍼컴퓨팅 기술에 기반한 신약재창출 시뮬레이션 사례 연구)

  • Kim, Jik-Soo;Rho, Seungwoo;Lee, Minho;Kim, Seoyoung;Kim, Sangwan;Hwang, Soonwook
    • Journal of KIISE
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    • v.42 no.1
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    • pp.15-22
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    • 2015
  • In this paper, we present a case study for a drug repositioning simulation based on distributed supercomputing technology that requires highly efficient processing of large-scale computations. Drug repositioning is the application of known drugs and compounds to new indications (i.e., new diseases), and this process requires efficient processing of a large number of docking tasks with relatively short per-task execution times. This mechanism shows the main characteristics of a Many-Task Computing (MTC) application, and as a representative case of MTC applications, we have applied a drug repositioning simulation in our HTCaaS system which can leverage distributed supercomputing infrastructure, and show that efficient task dispatching, dynamic resource allocation and load balancing, reliability, and seamless integration of multiple computing resources are crucial to support these challenging scientific applications.

Multi-Channel MAC Protocol Based on V2I/V2V Collaboration in VANET (VANET에서 V2I/V2V 협력 기반 멀티채널 MAC 프로토콜)

  • Heo, Sung-Man;Yoo, Sang-Jo
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.40 no.1
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    • pp.96-107
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    • 2015
  • VANET technologies provide real-time traffic information for mitigating traffic jam and preventing traffic accidents, as well as in-vehicle infotainment service through Telematics/Intelligent Transportation System (ITS). Due to the rapid increasement of various requirements, the vehicle communication with a limited resource and the fixed frame architecture of the conventional techniques is limited to provide an efficient communication service. Therefore, a new flexible operation depending on the surrounding situation information is required that needs an adaptive design of the network architecture and protocol for efficiently predicting, distributing and sharing the context-aware information. In this paper, Vehicle-to-Infrastructure (V2I) based on communication between vehicle and a Road Side Units (RSU) and Vehicle-to-Vehicle (V2V) based on communication between vehicles are effectively combined in a new MAC architecture and V2I and V2V vehicles collaborate in management. As a result, many vehicles and RSU can use more efficiently the resource and send data rapidly. The simulation results show that the proposed method can achieve high resource utilization in accordance. Also we can find out the optimal transmission relay time and 2nd relay vehicle selection probability value to spread out V2V/V2I collaborative schedule message rapidly.

Adaptive Background Subtraction Based on Genetic Evolution of the Global Threshold Vector (전역 임계치 벡터의 유전적 진화에 기반한 적응형 배경차분화)

  • Lim, Yang-Mi
    • Journal of Korea Multimedia Society
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    • v.12 no.10
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    • pp.1418-1426
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    • 2009
  • There has been a lot of interest in an effective method for background subtraction in an effort to separate foreground objects from a predefined background image. Promising results on background subtraction using statistical methods have recently been reported are robust enough to operate in dynamic environments, but generally require very large computational resources and still have difficulty in obtaining clear segmentation of objects. We use a simple running-average method to model a gradually changing background, instead of using a complicated statistical technique. We employ a single global threshold vector, optimized by a genetic algorithm, instead of pixel-by-pixel thresholds. A new fitness function is defined and trained to evaluate segmentation result. The system has been implemented on a PC with a webcam, and experimental results on real images show that the new method outperforms an existing method based on a mixture of Gaussian.

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Real-Time Transmission Scheme for Ad Hoc Self-Organizing (ASO) TDMA in Multi-Hop Maritime Communication Network (Ad Hoc Self-Organizing (ASO) TDMA 방식 다중-홉 해양통신망에서의 실시간 전송 기법)

  • Cho, Kumin;Yun, Changho;Lim, Yong-Kon;Kang, Chung G.
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.39B no.5
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    • pp.260-270
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    • 2014
  • In this paper, we first analyze the delay performance of Dynamic Space-time Subframe (DSTS)-based frame structure which has been proposed to support the real-time service as well as non real-time service, using Ad hoc Self-Organizing Time Division Multiple Access (ASO-TDMA) MAC protocol, especially when transmitting a MAC SDU with two or more MAC PDUs, in a multi-hop ad-hoc maritime communication network. We propose two key transmission schemes: contiguous DSTS reservation which guarantees the end-to-end delay for the multiple PDUs, and adaptive transmission probability control schemes to maximize the system throughput. Our simulation results show that the proposed schemes outperform the system throughput of the existing transmission schemes, while supporting the real-time requirement.

Traffic-Adaptive Dynamic Integrated Scheduling Using Rendezvous Window md Sniff Mode (랑데부 윈도우와 스니프 모드를 이용한 트래픽 적응 동적 통합 스케줄링)

  • 박새롬;이태진
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.28 no.8A
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    • pp.613-619
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    • 2003
  • Bluetooth is a communication technology enabling short-range devices to be wirelessly connected. A master and one or more slave devices are connected to form a piconet, and piconets are joined to form a scatternet. The units participating in two or more piconets in a scatternet, is called bridge or gateway nodes. In order to operate the scatternet efficiently, both piconet scheduling for the master and slaves of a piconet, and scatternet scheduling for the bridge nodes are playing important roles. In this paper, we propose a traffic-adaptive dynamic scatternet scheduling algorithm based on rendezvous points and rendezvous windows. The performance of the proposed algorithm is compared and analyzed with that of a static scheduling algorithm via simulations. Simulation results show that our algorithm can distribute wireless resources efficiently to bridge nodes depending on the traffic characteristics.

New Scheduling Algorithm for Fairness Criteria of ATM ABR (ATM ABR의 공평성들을 위한 새로운 스케쥴링 알고리즘)

  • Chung, Kyung-Taek;Park, Jun-Seong;Park, Hyun;Chon, Byoung-Sil
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.39 no.4
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    • pp.188-200
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    • 2002
  • The WRR scheduling algorithm is widely used in ATM networks due to its simplicity and the low cost of hardware implementation. It guarantees minimum cell rate according to the weight of each queue. The fairness is a important factor for ABR service. That is, scheduling algorithm allocates network resources fairly to each VC. However, WRR algorithm shows worse performance on bursty traffic. Because it schedules input traffics according to predetermined weight, it can not satisfies fairness criteria, MCR plus equal share and Maximum of MCR or Max-Min share, defined by ATM Forum TM 4.1 specification. The Nabeshima et al algorithm is not adapt to network status rapidly because it is not compensate the weights of unused bandwidth to VCs and assign the unused bandwidth to VCs by RR method. In this paper, we propose a scheduling algorithm for satisfying the two fairness criteria, MCR plus equal share and Maximum of MCR or Max-Min share, among the six criteria defined by ATM Forum TM 4.1 specification. The WRR, Nabeshima et al, and the proposed scheduling algorithms are compared with respect to fairness and convergence time throughout experimental simulation. According to the simulation results, the proposed algorithm shows higher fairness and more rapid convergence than other algorithms.

An Adaptive Load Control Scheme in Hierarchical Mobile IPv6 Networks (계층적 모바일 IP 망에서의 적응형 부하 제어 기법)

  • Pack Sang heon;Kwon Tae kyoung;Choi Yang hee
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.29 no.10A
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    • pp.1131-1138
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    • 2004
  • In Hierarchical Mobile Ipv6 (HMIPv6) networks, the mobility anchor point (MAP) handles binding update (BU) procedures locally to reduce signaling overhead for mobility. However, as the number of mobile nodes (MNs) handled by the MAP increases, the MAP suffers from the overhead not only to handle signaling traffic but also to Process data tunneling traffic. Therefore, it is important to control the number of MNs serviced by the MAP, in order to mitigate the burden of the MAP. We propose an adaptive load control scheme, which consists of two sub-algorithms: threshold-based admission control algorithm and session-to-mobility ratio (SMR) based replacement algorithm. When the number of MNs at a MAP reaches to the full capacity, the MAP replaces an existing MN at the MAP, whose SMR is high, with an MN that just requests binding update. The replaced MN is redirected to its home agent. We analyze the proposed load control scheme using the .Markov chain model in terms of the new MN and the ongoing MN blocking probabilities. Numerical results indicate that the above probabilities are lowered significantly compared to the threshold-based admission control alone.

An Efficient Flooding Algorithm for Position-based Wireless Ad hoc Networks (위치 기반 무선 애드 혹 네트워크에서의 효율적인 플러딩 기법)

  • JaeGal, Chan;Lee, Chae-Woo
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.45 no.10
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    • pp.17-28
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    • 2008
  • Rapid transmission of packets is important in mobile ad hoc networks. Therefore, a flooding algorithm which can guarantee a short delay is useful in various ways of packet transmission. Flooding algorithm is one of the packet transmission methods that broadcasts a packet to all nodes within a transmission range. It does not rebroadcast the same packet which is already received from other nodes. Basically, flooding algorithm's advantages are that it simply writes an address and a sequence number in a packet, and it can be adapted for topological changes easily. However, the basic flooding algorithm has a shortcoming that causes excessive traffic because all nodes transmit a packet at least once. To solve this problem, research about flooding algorithms that constrains duplicated transmission of packets based on probabilistic and geographical information is going on. However, the existing algorithm cannot guarantee short delay and low traffic. To reduce a delay, in this paper we propose a flooding scheme where a node which receives a broadcasted packet chooses and allocates a priority to one of its neighbor nodes and then the node transmits the packet promptly to the node to whom the priority was given. Moreover, we propose a totally fresh a roach to constrain duplicated transmission by searching a node that already received the same packet by using node's geographical position information. Lastly, we compare the performance of the proposed algorithm with the existing algorithm through simulation. The results show that the proposed algorithm can distribute packets through a lower number of total packet transmissions and faster delivery time than the existing algorithm.

Zone-based Power Control Mechanism of CDMA Forward Link for High-speed Wireless Data Services (고속 무선 데이터 서비스를 위한 CDMA 순방향 링크에서의 Zone-based 전력제어 방식)

  • 윤승윤;임재성
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.27 no.7B
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    • pp.673-685
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    • 2002
  • In this paper, we analyze the pros and cons of the fast power control to the forward link in the environments where mixed traffics of voice and data produce the transmitted/received power difference. We propose the Zone-based power control scheme that can improve the performance of the fast power control scheme in the viewpoint of the resource allocation. The proposed scheme is a mechanism that controls both the power and rate of non-realtime data traffics according to location distribution of the mobile stations. The scheme is based on the conventional fast power control scheme in the CDMA systems, and it adaptively controls the transmission rate of each data traffic. Zone-based rate control of data call brings about somewhat power margin to the call. As a result, the proposed scheme saves the power consumption of portables and reduces the amount of interference. With the proposed scheme, not only be extended the service coverage of high-rate traffic to the entire cell service coverage, but also the QoS of low-rate traffic can keep going through the service time, especially, in the situation that the amount of incoming interference is much larger. The experimental results show that the proposed scheme yields a improved performance compared with the conventional scheme in terms of the power consumption and traffic throughput of portables, especially, with the increasing number of high-rate data traffics.