• Korean journal of applied entomology
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• v.61 no.3
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• pp.449-460
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• 2022

The morphology and whole genome sequence of Spodoptera exigua nucleopolyhedrovirus K1 (SeNPV-K1) isolated in Korea were analyzed for the use as an eco-friendly control source against S. exigua. The polyhedra of SeNPV-K1 was amorphous with a size of 0.6-1.8 ㎛, and there was no external difference with the previously reported SeNPV. As a result of analyzing the nucleotide sequence of the whole genome, it was composed of 135,756 bp, which is 145 bp more than that of the previously reported SeNPV. The G+CG+C content was 44% and there were 6 homologous repeated sequences, so there was no significant difference from the previous report. As a result of ORF analysis, SeNPV-K1 had 137, two fewer than those previously reported, and 4 ORFs present only in SeNPV-K1 were confirmed. These 4 ORFs are non-essential genes and were not considered to have a significant influence on the characteristics of the SeNPV. The genome vista analysis showed that the overall sequence similarity between SeNPV-K1 and the previously reported SeNPV was very high. The whole genome of SeNPV-K1 analyzed for the first time in Korea was found to be similar to the previously reported SeNPV, but it was confirmed that it was a novel resource in Korea with different isolate.

• The Journal of Korean Institute of Electromagnetic Engineering and Science
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• v.19 no.10
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• pp.1115-1121
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• 2008

In this paper, dielectric slab loaded cylindrical cavity resonator measurement technique is presented to determine the dielectric constant of a dielectric material. The dielectric constant is measured by the resonant frequency deviation of empty and dielectric slab loaded cavity. Characteristic equations are derived by th exact field analysis. The measurement configurations are formed using HP8719A vector network analyzer and an experimental cylindrical metallic cavity with circular cross-section. The validity of the theory is confirmed by experiments and CST MWS 4.0(3D simulator). The results were in the whole satisfactory. The measured dielectric constant of teflon and bakelite are 2.03 and 4.44, respectively.

• Proceedings of the Korea Information Processing Society Conference
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• 2013.11a
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• pp.1340-1342
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• 2013

최근 대량으로 발생되고 있는 유전체 정보 해석 과정 중의 하나로 유전체 내에서 유전자 기능 분석을 수행하기 위하여 본 논문에서는 C-Hunter 알고리즘을 이용하여 계통 발생 다양성을 대표하는 8종의 생물데이터를 이용하여 유전자 클러스터들을 다양한 OS에서 GUI환경으로 기능 해석을 수행 할 수 있도록 구현하였다. 본 연구를 통하여 NGS 수행 시 대량 생산되는 유전체의 유전자 기능 분석을 보다 빠르고 정확하게 다양한 환경에서 수행할 수 있을 것으로 기대한다.

• Journal of Plant Biotechnology
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• v.42 no.4
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• pp.326-335
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• 2015

Citrus is an economically important fruit tree with the largest amount of fruit production in the world. It provides important nutrition such as vitamin C and other health-promoting compounds including its unique flavonoids for human health. However, it is classified into the most difficult crops to develop new cultivars through conventional breeding approaches due to its long juvenility and some unique reproductive biological features such as gamete sterility, nucellar embryony, and high level of heterozygosity. Due to global warming and changes in consumer trends, establishing a systematic and efficient breeding programs is highly required for sustainable production of high quality fruits and diversification of cultivars. Recently, reference genome sequences of sweet orange and clementine mandarin have been released. Based on the reference whole-genome sequences, comparative genomics, reference-guided resequencing, and genotyping-by-sequencing for various citrus cultivars and crosses could be performed for the advance of functional genomics and development of traits-related molecular markers. In addition, a full understanding of gene function and gene co-expression networks can be provided through combined analysis of various transcriptome data. Analytic information on whole-genome and transcriptome will provide massive data on polymorphic molecular markers such as SNP, INDEL, and SSR, suggesting that it is possible to construct integrated maps and high-density genetic maps as well as physical maps. In the near future, integrated maps will be useful for map-based precise cloning of genes that are specific to citrus with major agronomic traits to facilitate rapid and efficient marker-assisted selection.

• Proceedings of the Korean Society of Crop Science Conference
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• 2017.10a
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• pp.234-234
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• 2017

• Proceedings of the Korean Society for Bioinformatics Conference
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• 2003.10a
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• pp.200-209
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• 2003

주어진 염기서열에서 유전자 영역을 예측하는 유전자 구조 예측은 유전체 프로젝트의 중요한 과정 중 하나이며 유전체 프로젝트 전체에 큰 영향을 준다. 진핵생물의 유전체가 원핵생물의 유전체에 비해 더 복잡한 구조를 가지기 때문에 진핵생물의 유전자 구조 예측 모델 역시원핵생물에 비해 다양한 모델이 제안되었다. 본 연구팀은 duration hidden markov model을 기본형태로 하여 EGSP(Eukaryotic Gene Structure Prediction)프로그램을 개발하였다. 현재 개발된 진핵생물의 유전자 구조 예측 알고리즘 중에서 GenScan이 가장 정교한 젓으로 보고 되고 있는데, EGSP의 결과분석을 위해 Genscan과 함께 GeneID, Morgan의 예측결과를 여러 가지 기준에서 비교하였다. EGSP는 정교한 예측모델을 가지고 있음에도 각 구성모듈에 대한 파라메터의 정교함에서 부족한 면이 나타나므로, 모델의 개선과 각 모듈의 조율을 통해 더욱 개선된 결과를 가지게 될 것이다.

• Proceedings of the Korean Institute of Electrical and Electronic Material Engineers Conference
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• 2004.07b
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• pp.578-581
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• 2004

유전체가 삽입된 공동 공진기는 유전체에 대부분의 전자계가 집속되어 있기 때문에, 도체 손실이 매우 적고 높은 Q값과 온도 안정성이 뛰어나다. 동일한 주파수에서 동작하는 다른 필터에 비해 상대적으로 작기 때문에 소형화에도 적합하다. 본 논문에서는 유전체가 삽입된 공동 공진기의 전자기 분포와 특성을 수치해석과 HFSS(High Frequency Structure Simulator)를 이용하여 분석하였고 이 결과를 토대로 HFSS를 이용한 순차적 방법을 도입하여 4-pole 이중모드 대역통과 필터를 설계, 제작하였다.

• Proceedings of the KAIS Fall Conference
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• 2008.11a
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• pp.264-266
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• 2008

본 논문은 유한한 유전체 격자구조의 정확한 주파수 선택 특성을 해석하고자 새로운 방법을 제시하였다. 기존의 오차, 근사화를 갖고 있는 해석방법과는 달리 유한한 구조에서 근사화가 전혀 없는 방법을 제시하였다. 유한한 격자구조의 유전체는 내부에 존재하는 필드 분포가 한정되어 있으며 구조 파라메터등에 따라 유한한 모드만이 생길 수 있어 입사되는 필드에 따른 생성 모드가 한정되어 있다. 본 논문은 이러한 방법을 이용하여 유전체 격자구조의 주파수 선택특성에 활용에 이용될 수 있을 것으로 사료된다.

• Journal of Genetic Medicine
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• v.7 no.2
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• pp.119-124
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• 2010

More than 7,000 rare Mendelian diseases have been reported, but less than half of all rare monogenic disorders has been discovered. In addition, the majority of mutations that are known to cause Mendelian disorders are located in protein-coding regions. Therefore, exome sequencing is an efficient strategy to selectively sequence the coding regions of the human genome to identify novel genes associated with rare genetic disorders. The "exome" represents all of the exons in the human genome, constituting about 1.5% of the human genome. Exome sequencing is carried out by targeted capture and intense parallel sequencing. After the first report of successful exome sequencing for the identification of causal genes and mutations in Freeman Sheldon syndrome, exome sequencing has become a standard approach to identify genes in rare Mendelian disorders. Exome sequencing is also used to search the causal genes and variants in complex diseases. The successful use of exome sequencing in Mendelian disorders and complex diseases will facilitate the development of personalized genomic medicine.

• KOGO NEWS
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• v.9 no.2
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• pp.5-9
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• 2009