• Journal of Life Science
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• v.21 no.9
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• pp.1329-1335
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• 2011

Korean native goats, which are characterized by black coat color, have existed on the Korean peninsula for a long time. Until now, there has been no comprehensive investigation concerning their genetic diversity, phylogenetic analysis or origin. In this study, we investigated the genetic diversity and verified phylogenetic status of the Korean native goat using the 453-bp fragment of the hypervariable fragment I (HVI) of mitochondrial DNA (mtDNA) D-loop region from 60 individuals among 5 populations. The Korean native goat showed less haplotype diversity when compared with goats from other countries. In addition, 6 haplotypes that had not been previously reported were verified in this study. In phylogenetic analyses with other country's goats, 10 haplotypes from Korean native goats were classified into mtDNA lineage A. Moreover, in a phylogenetic tree for goats which contained mtDNA lineage A, 8 of 10 haplotypes could be included in a subgroup with goats from Vietnam and an area of China. However, none of the remaining haplotypes belonged to a major group of Korean native goats and were located on different independent positions. These results suggest that almost Korean native goats aligned more closely to China and Vietnam breeds in mtDNA lineage A and there was no gene flow from other mtDNA lineages. Our results will contribute to conservation strategies and genetic breeding of Korean native goats.

• Proceedings of the Korea Contents Association Conference
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• 2012.05a
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• pp.169.2-169.2
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• 2012

암 관련 유전자를 후성유전학적으로 제어하는 방법에는 miRNA, DNA 메틸화, 그리고 히스톤 단백질의 변형에 의해서 가능하다. 그러나 후성유전학적 방법을 통해서 암 관련 유전자를 제어하기 위해서는 첫째, 한 유전자에 여러 miRNA들에 의해서 조절되기 때문에 선택의 문제가 있으며, 둘째, 암 관련 유전자를 제어하는 DNA 메틸화 패턴이 다양하며, 셋째, 히스톤 단백질의 변형 자체가 다양하며 각 유전자에 대한 히스톤 변형의 특이성이 있다. 따라서 후성유전학 기반 하에서 암 관련 유전자를 제어하기 위해서는 시스템 수준에서의 접근이 바람직하다. 본 연구에서는 암 관련 유전자의 네트워크를 구축하고, 이 네트워크를 기반으로 암 유전자를 제어하는 miRNA에 최우선 순위를 부여하는 방법, 암 유전자의 DNA 메틸화 모티프 패턴을 분석하는 방법, 히스톤 변형과 암 관련유전자의 상관관계를 분석하는 방법을 제시하고자 한다.

• Korean Journal of Breeding Science
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• v.40 no.3
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• pp.263-268
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• 2008

Estimates of genetic gain (in volume growth) and diversity (expressed as status number, $N_s$) were determined in a clonal seed orchard of Pinus koraiensis. The genetic thinning was based on clonal breeding values (represented by general combining ability) obtained from progeny tests, clonal fertility estimated by strobilus production, and clonal size variation determined by the ramet numbers per clone. Parental GCA values for volume growth were calculated, based on height and diameter at breast height measured from field trials. Clonal fertility was estimated from the assessments of strobilus production over twelve years from 1991 to 2003, and used for the calculation of status number. There are 179 clones and 5,268 ramets in 12ha area of P. koraiensis clonal seed orchard. Genetic gain and diversity estimates were determined under assumptions of 30% pollen contamination and inferior genetic value of contaminating pollen. Genetic gain increased as thinning rates were set from 10% to 60%. However, for the higher thinning intensities, the increase of genetic gain was not remarkable. Genetic thinning by means of truncation selection resulted in a greater genetic gain but a large decrease in status number. Status number was represented around 40 clones for 10% through 60% thinning intensities, but for the higher thinning intensities, it was a bit fluctuated. Based on the present results, it could be concluded that thinning rate should not be stronger than 60% to optimize genetic gain while conserving genetic diversity. Consequently 50% or 60% thinning rate might be appropriate for genetic thinning in the clonal seed orchard of P. koraiensis. The effect of pollen contamination on the genetic gain and the consequence of genetic thinning for seed production in the clonal seed orchard, and seed orchard management scheme were also discussed.

• Journal of the Korean Institute of Intelligent Systems
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• v.11 no.3
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• pp.191-199
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• 2001

This paper presents a new genetic algorithm for job-shop scheduling problems. When we design a genetic algorithm for difficult ordering problems such as job-shop scheduling problems, it is important to design encoding/crossover that is excellent in characteristic preservation and to maintain a diversity of population. We used Job-based order crossover(JOX). Since the schedules generated by JOX are not always active-schedule, we proposed a method to transform them into active schedulesby using the GT method with c)laracteristic preservation. We introduce strategies for maintaining a diversity of the population by eliminating same individuals in the population. Furthermore, we are not used mutation. Experiments have been done on two examples: Fisher s and Thompson s $lO\timeslO and 20\times5$ benchmark problem.

• Korean Journal of Poultry Science
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• v.46 no.2
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• pp.65-75
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• 2019

A number of Korean native chicken(KNC) populations were registered in FAO (Food and Agriculture Organization) DAD-IS (Domestic Animal Diversity Information Systems, http://www.fao.org/dad-is). But there is a lack of scientific basis to prove that they are unique population of Korea. For this reason, this study was conducted to prove KNC's uniqueness using 25 Microsatellite markers. A total of 548 chickens from 11 KNC populations (KNG, KNB, KNR, KNW, KNY, KNO, HIC, HYD, HBC, JJC, LTC) and 7 introduced populations (ARA: Araucana, RRC and RRD: Rhode Island Red C and D, LGF and LGK: White Leghorn F and K, COS and COH: Cornish brown and Cornish black) were used. Allele size per locus was decided using GeneMapper Software (v 5.0). A total of 195 alleles were observed and the range was 3 to 14 per locus. The MNA, $H_{\exp}$, $H_{obs}$, PIC value within population were the highest in KNY (4.60, 0.627, 0.648, 0.563 respectively) and the lowest in HYD (1.84, 0.297, 0.286, 0.236 respectively). The results of genetic uniformity analysis suggested 15 cluster (${\Delta}K=66.22$). Excluding JJC, the others were grouped in certain cluster with high genetic uniformity. JJC was not grouped in certain cluster but grouped in cluster 2 (44.3%), cluster 3 (17.7%) and cluster8 (19.1%). As a results of this study, we can secure a scientific basis about KNC's uniqueness and these results can be use to basic data for the genetic evaluation and management of KNC breeds.

• Journal of The Korean Association For Science Education
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• v.31 no.5
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• pp.680-693
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• 2011

In conceptual ecology, a concept does not exist independently but occupies an ecological niche in ecological environment. Among many biological concepts, genetic concepts are connected to several units including the genetics unit, and within the genetics unit the concepts of sub-areas are highly dependent on one another. For this reason, we analyzed conceptual diversity and conceptual proximity of genetic concepts through the ecological niche approach. For this purpose, we surveyed 995 9th graders. The areas covered in the survey were four genetic concepts: gene, chromosome, mitosis, and meiosis. The questionnaire presented biological concepts or terms related to each area, and the respondent marked the relevance between the presented biological concepts or terms and each area on a scale of 1~30 points. With 9th grade students, we analyzed the change of genetic concepts through class by the ecological niche approach. Through class, the total number of concepts increased in all of the areas, and the increase was smallest in the area of meiosis followed by mitosis, chromosome and gene. Relative density decreased with increases in the number of concepts. The conceptual diversity index also increased through class in all of the areas, and the increase was smallest in the area of meiosis followed by mitosis, chromosome and gene. In addition, difference in the relative density of concepts was reduced after class, and difference in the score of relevance was also reduced and consequently similarity among concepts increased. From these results were drawn conclusions as follows: First, through class, the conceptual diversity of genetic concepts increased. Second, through class, the conceptual proximity of genetic concepts increased.

• Proceedings of the Plant Resources Society of Korea Conference
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• 2020.08a
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• pp.42-42
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• 2020

오이(Cucumis sativa L.)는 1년생 초본의 덩굴성 박과 작물로 미숙한 과실을 다양한 식품 용도로 이용하고 있다. 오이는 시설재배기술 확립으로 연중 생산과 공급이 가능하나 내병성 품종개발이 필요한 실정이다. 또한 오이의 다양한 생리활성 물질에 대한 관심이 높아지고 있어 이를 위한 다양한 오이 자원이 필요한 실정이다. 본 연구에서는 국내외에서 수집한 오이 180자원의 형태적 특성을 분석하여 육종 소재로 활용하는데 있어 기초 정보를 제공하고자 하였다. 본 연구에서 사용된 오이 자원의 원산지는 조지아 98자원, 한국 37자원, 중국 28자원, 우즈베키스탄 17자원이었다. 오이 180자원은 모두 덩굴손을 가졌으며 자웅동주로 조사되었다. 착과습성은 주지형 83자원, 주지 및 측지형 97자원으로 조사되었고 절화당 자화수는 175자원이 2개로 조사되었으며 5자원은 1개로 조사되었다. 과형은 장원형 87자원, 단원형 92자원으로 대부분을 차지하였으며 과선단좁은형이 1자원 조사되었다. 과기부형태는 평평한 형태 83자원, 휘어진 형태 94자원으로 대부분이었으며 오목한 형태 1자원, 뽀족한 형태 2자원이 조사되었다. 과선단의 형태는 평평한 형태 148자원, 휘어지 형태 32자원으로 조사되었다. 오이 유전자원의 개화기는 60~80일로 평균 66.1일 이었으며 과실 성숙기는 33~68일로 평균 49.6일이었다. 국가별로 개화기는 62.4일(중국)~68.5일(한국), 과실성숙기는 48.3일(중국,조지아)~54.1일(우즈베키스탄)로 조사되었다. 본 실험에서 조사된 오이 유전자원의 형태적 특성은 오이 선발에 있어 기초 정보로 활용 가능할 것이며 추가적으로 농업형질, 내병성, 기능성 분석등의 오이 육종 프로그램을 위한 다양한 자원 평가 및 선발이 필요할 것이다.

• Proceedings of the Korean Society for Emotion and Sensibility Conference
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• 2009.05a
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• pp.23-26
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• 2009

한국인 최초 전체 유전체 서열(KOREF; Koreanindividualgenomesequence) 은 한국인을 위한 참조 서열로써 사용될 수 있다. 2009년 1월에 남성 한국인 유전체를 솔렉사(Solexa)를 통해 전장서열을 결정하였다. 이는 NCBI의 인간게놈프로젝트에서 생산한 게놈의 99.83%를 커버하며, 또한 NCBI게름서열의 약 20배를 커버할 정도의 유전체 서열을 결정하여 매우 높은 정확도를 가진 한국인 고유유전체이다. 한국인 유전체 서열의 분석결과 현재까지 밝혀지지 않았던 한국인 특이적인 3백만 개의 SNP를 밝혀냈다. 먼저 보고된 중국인 게놈은 한국인 게놈과 매우 가까운 민족 그룹임에도 불구하고 38%(3,186,352 SNP중에 1,217,362 SNP) 의 특이적인 차이를 나타내었으며, 또한 미토콘드리아 서열 비교를 통해서도 특이적인 다양성을 보여주는 SNP데이터를 확인 할 수 있었다. 차세대 게놈서열결정의 기술은 적은 노력과 비용으로 인간 유전체 데이터를 얻을 수 있게 되었으며, 이러한 개인유전체 데이터는 개인유전체 의학으로 가는 초석이 될 것이다.

• The Korean Journal of Mycology
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• v.27 no.2 s.89
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• pp.119-123
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• 1999

Genetic diversity of Korean isolates of Pseudomonas tolaasii and WLRO (White line reacting organism) was assessed using BOX-, REP-, and ERIC-PCR analysis. P. tolaasii showed nearly identical band patterns among isolates, whereas considerable DNA polymorphism was found among isolates of WLRO. On the basis of dendogram, WLRO is characterized as a complex group with high degree of genetic differentiation. Genetic relatedness based on repetitive DNA regions was low between P. tolaasii and WLRO isolates.

• Journal of Environmental Policy
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• v.6 no.1
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• pp.41-60
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• 2007

Attempts were made to define the elements of debates, impact of decisions of the Access to Genetic Resources and Benefit-sharing(ABS) of the Conference of the Parties(COP) to the Convention on Biological Diversity(CBD) In Korea. Providing policy suggestions to cope with ABS, a cross-cutting issue of the meetings of the COP, was also undertaken. Meetings concerning ABS deal with several key matters such as an international regime, which is a legally binding implementation tool of the Bonn Guidelines, an international certificate of genetic resources' origin/source/legal provenance, and disclosure of origin of genetic resources, compliance measures with prior informed consent of the Contracting Parties providing such resources and with mutually agreed terms on which access was granted. Developing countries, rich in biodiversity and genetic resources, use the CBD as a major tool to maximize their national profits. They demand for national sovereign rights for the genetic resources and indigenous communities providing associated traditional knowledge. At the meetings of the COP, in addition, they requested that developed countries should transfer technologies and provide a financial mechanism for resource conservation to them. On the contrary, the developed countries argue that facilitating access to genetic resources is essential for scientific research and development, and that both Intellectual Property Rights and biotechnology using genetic resources should be protected to maximize their national benefits. Decisions of the COP concerning the Bonn Guidelines and compliance measures with ABS will affect on various socioeconomic fields of Korea, a country which is short of genetic resources. Especially, the importation of genetic resources and land development which might damage genetic resources will be limited seriously. Consequently, overall expenses will increase for the securing genetic resources from the foreign countries and developing biotechnology for conservation and sustainable uses of genetic resources. To minimize the adverse impacts, we endeavor to establish our clear standpoint and to lead the international trends, which are favorable for us. In order to achieve these objectives, government needs i) to proceed researches to lead the international ABS debates actively and to prepare the expected decisions of the future meetings of the COP, ii) to establish a national implementation plan to cope with the ABS and its related decisions, iii) to examine and improve the efficiencies of the national implementation plan with a proper monitoring system, and iv) cope with the other international meetings including the meetings of Trade Related Intellectual Properly Rights and International Treaty on Plant Genetic Resources for Food and Agriculture actively.