• Title/Summary/Keyword: 분자동역학 모사

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Study of Oxygen Barrier Properties of Silk Fibroin Composite Membrane Using Molecular Dynamics Simulation (분자동역학 전산모사를 활용한 실크 피브로인 복합막의 산소 차단성 연구)

  • Young Jin Seo;Na Yeong Kwon;Chi Hoon Park
    • Membrane Journal
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    • v.33 no.6
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    • pp.447-453
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    • 2023
  • The performance of computer systems and the development of various computer simulation programs have made it possible to analyze chemical systems composed of more complex elements, and accordingly, research using molecular dynamics simulation is being actively conducted. Research on calculating the gas permeation characteristics of polymer membranes by molecular dynamics, which was previously conducted mainly through experiments, is receiving attention for gas barrier membranes used in food packaging and pharmaceuticals. Recently, there has been a report that a gas barrier effect appears when a coating film is made using silk fibroin, and in this study, a study was conducted using molecular dynamics simulation to confirm whether an oxygen barrier effect appears when a composite film is made using silk fibroin. We built a single model, calculated the gas permeation characteristics, and compared it with the experimental value to confirm that the model reflects the actual experimental results. Actual composite membrane models were then built and the gas movement path within the polymer was analyzed. As a result, oxygen molecules were found that they could not pass through and was blocked in the fibroin region. Therefore, the composite membrane with silk fibroin has excellent oxygen barrier property and is expected to be useful in food packaging, etc.

Deformation of Polymer Resist in NIL Process by Molecular Dynamic Simulation (분자동역학기법을 이용한 나노 임프린트 리소그래피 공정에서의 고분자 변형모사)

  • Woo, Young-Seok;Lee, Woo-Il
    • Proceedings of the KSME Conference
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    • 2007.05a
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    • pp.337-342
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    • 2007
  • In this study, molecular dynamics simulation of nano imprint lithography in which patterned stamp is pressed onto amorphous polyethylene(PE) surface are performed to study the behaviour of polymer. Force fields including bond, angle, torsion, and Lennard Jones potential are used to describe the inter-molecular and intra-molecular force of PE molecules and stamp, substrate. Periodic boundary condition is used in horizontal direction and canonical NVT ensemble is used to control the system temperature. As the simulation results, the behaviour of polymer is investigated during the imprinting process. The mechanism of polymer deformation is studied by means of inspecting the surface shape, volume, density, atom distribution. Deformation of the polymer resist was found for various of the stamp geometry and the alignment state of the polymer molecules.

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Molecular Dynamics Study of [C10mim][Br] Aggregation (분자동역학을 이용한 [C10mim][Br] 의 응집에 관한 연구)

  • Yoon, Hong-Min;Lee, Joon-Sang
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.36 no.8
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    • pp.873-876
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    • 2012
  • Ionic liquids (ILs) existing in the liquid ion form under standard conditions show a unique properties. 1-10-Alkyl-3-methyl-imidazolium bromide ([C10mim][Br]) is one of the ILs that shows amphiphilic characteristics under specific conditions. This property enables it to function as a surfactant, and therefore, it finds applications in a wide range of areas. In this study, we tried to predict the behavior, especially the aggregation aspect, of [C10mim][Br] in an aqueous solution using molecular dynamics (MD) simulations. The canonical (NVT) ensemble was used to relax the system and trace the trajectory of atoms. Several case studies were simulated and the interaction among [C10mim]+, [Br]-, and water was analyzed using the radial distribution function of each atom. The density distribution function was also used for the structural analysis of the entire system. We used the Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) code for the present MD simulations.

Molecular Dynamics Simulations on the Mechanical Behavior of Carbon Nanotube (탄소나노튜브의 역학적 거동에 관한 분자동역학 전산모사)

  • Park, Jong-Youn;Lee, Young-Min;Jun, Suk-Ky;Kim, Sung-Youb;Im, Se-Young
    • Proceedings of the KSME Conference
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    • 2003.04a
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    • pp.1083-1088
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    • 2003
  • Molecular dynamics simulations on the deformation behavior of single-walled carbon nanotube are performed. Formation energies of CNT's by interatomic potentials are computed and compared with ab initio results. Bending and axial compression are applied under lattice statics and NVT ensemble conditions. Specifically, we focus on the mechanism of kink formation in bending. The simulation results are comprehensively explained in the framework of atomistic energetics. The effects of temperature and chirality on the deformation of carbon nanotube are also studied.

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Molecular Level Understanding of Chemical Erosion on Graphite Surface using Molecular Dynamics Simulations (분자동역학을 이용한 그래파이트 표면에서의 화학적 삭마현상에 관한 분자 수준의 이해)

  • Murugesan, Ramki;Park, Gyoung Lark;Levitas, Valery I.;Yang, Heesung;Park, Jae Hyun;Ha, Dongsung
    • Journal of the Korean Society of Propulsion Engineers
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    • v.19 no.6
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    • pp.54-63
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    • 2015
  • We present a microscopic understanding of the chemical erosion due to combustion product on the nozzle throat using molecular dynamics simulations. The present erosion process consists of molecule-addition step and equilibrium step. First, either $CO_2$ or $H_2O$ are introduced into the system with high velocity to provoke the collision with graphite surface. Then, the equilibrium simulation is followed. The collision-included dissociation and its influence on the erosion is emphasized and the present molecular observations are compared with the macroscopic chemical reaction model.

A Study on a large-scale materials simulation using a PC networked cluster (PC Network Cluster를 사용한 대규모 재료 시뮬레이션에 관한 연구)

  • Choi, Deok-Kee;Ryu, Han-Kyu
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.30 no.5
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    • pp.15-23
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    • 2002
  • For molecular dynamics requires high-performance computers or supercomputers to handle huge amount of computation, it is not until recent days that the application of molecular dynamics to materials fracture simulations draw some attention from many researchers. With the recent advent of high-performance computers, computation intensive methods become more tractable than ever. However, carrying out materials simulation on high-performance computers costs too much in general. In this study, a PC cluster consisting of multiple commodity PCs is established and computer simulations of materials with cracks are carried out on it via molecular dynamics technique. The effect of the number of nodes, speedup factors, and communication time between nodes are measured to verify the performance of the PC cluster. Upon using the PC cluster, materials fracture simulations with more than 50,000 molecules are carried out successfully.

Effect of Force-field Types on the Proton Diffusivity Calculation in Molecular Dynamics (MD) Simulation (분자동역학 전산모사에서 force-field의 종류가 수소이온 확산도 계산에 미치는 영향)

  • Lee, Ji Hyun;Park, Chi Hoon
    • Membrane Journal
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    • v.27 no.4
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    • pp.358-366
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    • 2017
  • The most important factor in the performances of polymer electrolyte membranes for fuel cells is how fast hydrogen ions can be transported along the water channel formed inside the electrolyte membrane. Since the morphology of the water channel and the diffusivity of the protons are very important factors for the proton transport behavior, various molecular dynamics simulation studies are being carried out to clarify this. The force-field is an important variable parameterizing the movement and interaction of each atom in molecular dynamics simulation. In this study, proton diffusivities of the 3D models of polymer electrolyte membranes were calculated in order to analyze the effects of various types of force-fields on the molecular simulation. It has been found that the charge value determining the non-bonding interaction plays a very important role in the formation of the water channel morphology, and the COMPASS force-field can calculate the accurate proton diffusion behavior. Accordingly, for molecular dynamics simulation of polymer electrolyte membranes, the proper selection of the force-field is very important due to its great effect on the proton diffusion as well as the final molecular structure.