• The Journal of the Korea Contents Association
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• v.16 no.10
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• pp.608-616
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• 2016

The Smith-Watrman (SW) algorithm is a local alignment algorithm which is one of important operations in DNA sequence analysis. The SW algorithm finds the optimal local alignment with respect to the scoring system being used, but it has a problem to demand long execution time. To solve the problem of SW, some methods to perform SW in distributed and parallel manner have been proposed. The ADAM which is a distributed and parallel processing framework for DNA sequence has parallel SW. However, the parallel SW of the ADAM does not consider that the SW is a dynamic programming method, so the parallel SW of the ADAM has the limit of its performance. In this paper, we propose a method to enhance the parallel SW of ADAM. The proposed parallel SW (PSW) is performed in two phases. In the first phase, the PSW splits a DNA sequence into the number of partitions and assigns them to multiple nodes. Then, the original Smith-Waterman algorithm is performed in parallel at each node. In the second phase, the PSW estimates the portion of data sequence that should be recalculated, and the recalculation is performed on the portions in parallel at each node. In the experiment, we compare the proposed PSW to the parallel SW of the ADAM to show the superiority of the PSW.

• The Journal of the Korea institute of electronic communication sciences
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• v.10 no.2
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• pp.239-246
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• 2015

Video based object detection is basic technology of implementing smart CCTV system. Various features and algorithms are developed to detect object, however computations of them increase with the performance. In this paper, performances of object detection algorithms with GPU and CPU are compared. Adaboost and SVM algorithm which are widely used to detect pedestrian detection are implemented with CPU and GPU, and speeds of detection processing are compared for the same video. As results of frame rate comparison of Adaboost and SVM algorithm, it is shown that the frame rate with GPU is faster than CPU.

• Annual Conference of KIPS
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• 2014.11a
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• pp.115-117
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• 2014

최근 OpenCL, CUDA와 같은 이종 병렬 컴퓨팅 프레임워크가 등장함에 따라, 많은 연산량을 요구하는 알고리즘에 대한 이종 병렬 처리 연구가 늘고 있다. 본 논문에서는 연산량이 많은 지문개선(fingerprint enhancement) 알고리즘을 OpenCL을 이용해 병렬화하고 최적화하여 연산 시간을 단축하고자 한다. 이를 위하여 2차원 FFT 및 필터링 알고리즘을 병렬화하고, Loop Unrolling 및 메모리 접근 최적화 등의 기법을 적용하였다. 실험을 통하여 CPU의 순차적 처리기법과 비교하여 개선된 가속화 기법을 이용한 지문개선 알고리즘이 최대 25배의 성능이 향상하였음을 확인하였다.

• KIPS Transactions on Computer and Communication Systems
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• v.10 no.9
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• pp.243-250
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• 2021

Recently, with the development of cloud computing, interest in database outsourcing is increasing. However, when the database is outsourced, there is a problem in that the information of the data owner is exposed to internal and external attackers. Therefore, in this paper, we propose a parallel range query processing algorithm that supports privacy protection. The proposed algorithm uses the Paillier encryption system to support data protection, query protection, and access pattern protection. To reduce the operation cost of a checking protocol (SRO) for overlapping regions in the existing algorithm, the efficiency of the SRO protocol is improved through a garbled circuit. The proposed parallel range query processing algorithm is largely composed of two steps. It consists of a parallel kd-tree search step that searches the kd-tree in parallel and safely extracts the data of the leaf node including the query, and a parallel data search step through multiple threads for retrieving the data included in the query area. On the other hand, the proposed algorithm provides high query processing performance through parallelization of secure protocols and index search. We show that the performance of the proposed parallel range query processing algorithm increases in proportion to the number of threads and the proposed algorithm shows performance improvement by about 5 times compared with the existing algorithm.

• Proceedings of the Korean Information Science Society Conference
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• 2012.06a
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• pp.403-405
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• 2012

접미사 트리는 문자열 압축, 텍스트 처리, 생물정보학 등 다양한 응용 분야에서 사용되는 인덱스 자료구조이다. 최근 64bit 하드웨어와 멀티코어 CPU가 보급됨에 따라 메모리상에서 병렬로 접미사 트리를 생성하는 알고리즘이 활발히 연구되고 있다. 본 논문에서는 McCreight의 선형시간 알고리즘과 Chen의 병렬 알고리즘을 기반으로 메모리상에서 접미사 트리를 병렬로 생성하는 구현 방법을 보였으며, TBB, Cilk Plus와 같은 병렬 프로그래밍 라이브러리를 이용하여 병렬 알고리즘을 구현하였다. 알고리즘 실험 결과 병렬로 수행한 알고리즘이 직렬로 수행한 결과보다 최대 4배 가량 성능 향상을 얻을 수 있었으며, 병렬 라이브러리를 사용함으로써 가지는 오버헤드는 극히 적은 것으로 나타났다.

• The KIPS Transactions:PartA
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• v.8A no.1
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• pp.36-41
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• 2001

In this paper, we first design an parallel quadratic sieve algorithm for factoring method. We then present parallel factoring algorithm for factoring a large odd integer by repeatedly using the parallel quadratic sieve algorithm based on the divide-and-conquer strategy on SIMD machines with DMM. We show that this algorithm is optimal in view of the product of time and processor numbers.

• Journal of Korea Multimedia Society
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• v.1 no.2
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• pp.154-161
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• 1998

This paper proposes a parallel processor system which processes cultural assets image recognition and retrieval algorithm in real time. A serial algorithm which is developed for the parallel processor system is parallellized. The parallel processor system consists of a control unit, 100 PE(Processing Elements), and 10 Park's multi-access memory systems which has 11 memory modules per each one. The parallel processor system is simulated by CADENCE Verilog-XL which is a package for the hardware simulation. With the same simulated results as that of the serial algorithm, the speed ratio of the parallel algorithm to the serial one is 81. The parallel processor system we proposed is quite effective for cultural assets image processing.

• Proceedings of the Korean Institute of Intelligent Systems Conference
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• 2000.11a
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• pp.480-483
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• 2000

공학의 많은 응용분야에서 큰 회소 행렬(Large Sparse Matrices)에 대한 가장 작거나 또는 가장 큰 고유치(Eigenvalues)들을 요구하게 되는데, 이때 많이 이용되는 것은 Krylov Subspace로의 Projection방법이다. 대칭 행렬에 대해서는 Lanczos방법을, 비대칭 행렬에 대해서는 Biorhtogonal Lanczos방법을 이용할 수 있다. 이러한 기존의 알고리즘들은 새롭게 제안되는 병렬처리 시스템에서 효과적이지 못하다. 많은 프로세서를 가지는 병렬처리 컴퓨터 중에서도 분산 기억장치 시스템(Distributed Memory System)에서는 프로세서들 사이의 Data Communication에 필요한 시간을 줄이도록 해야한다. 본 논문에서는 기존의 Lanczos 알고리즘을 수정함으로써, 알고리즘의 동기점(Synchronization Point)을 줄이고 병렬화를 위한 입상(Granularity)을 증가시켜서 MPP인 Cray T3E에서 Data Communication에 필요한 시간을 줄인다. 많은 프로세서를 사용하는 경우 수정된 알고리즘이 기존의 알고리즘에 비해 더 나은 speedup을 보여준다.

• Journal of KIISE:Computer Systems and Theory
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• v.30 no.3_4
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• pp.117-129
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• 2003

In this paper, we propose advanced parallel join algorithm to efficiently process join operation on hypercube systems. This algorithm uses a broadcasting method in processing relation R which is compatible with hypercube structure. Hence, we can present optimized parallel join algorithm for that hypercube structure. The proposed algorithm has a complete solution of two essential problems - load balancing problem and data skew problem - in parallelization of join operation. In order to solve these problems, we made good use of the characteristics of clustering effect in the algorithm. As a result of this, performance is improved on the whole system than existing algorithms. Moreover. new algorithm has an advantage that can implement non-equijoin operation easily which is difficult to be implemented in hash based algorithm. Finally, according to the cost model analysis. this algorithm showed better performance than existing parallel join algorithms.

• Proceedings of the Korean Society of Computer Information Conference
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• 2017.01a
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• pp.39-40
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• 2017

소나 영상 시뮬레이션은 실시간 처리를 위해 병렬처리를 사용하여 연산성능을 증대시키고 있다. 하지만 모듈 간 병렬처리, 영상처리 알고리즘, 방대한 데이터 처리와 같은 시뮬레이션에 적용되는 작업은 성능향상을 위한 최적의 연산장치와 병렬처리 기법이 달라 실시간 처리를 위한 최적화가 어렵다. 본 논문에서는 효율적인 소나 영상 시뮬레이션의 개발을 위해 연산장치 및 병렬처리 기법에 따른 기술을 분류하고 실제 적용된 사례들을 소개한다.